http://lod.bco-dmo.org/id/dataset/722135
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-01-02
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Lab experiment to test effects of short-term exposure to live coral from corals, Porites lobata, Pocillopora sp., Porites rus, on Caerasignum maximum larvae (Vermetids_Corals project)
2017-10-05
publication
2017-10-05
revision
BCO-DMO Linked Data URI
2017-10-05
creation
http://lod.bco-dmo.org/id/dataset/722135
Nicole Phillips
Victoria University of Wellington
principalInvestigator
Craig Osenberg
University of Georgia
principalInvestigator
Jeffrey Shima
Victoria University of Wellington
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Phillips, N., Shima, J., Osenberg, C. (2017) Lab experiment to test effects of short-term exposure to live coral from corals, Porites lobata, Pocillopora sp., Porites rus, on Caerasignum maximum larvae (Vermetids_Corals project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2017-10-05) Version Date 2017-10-05 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/722135 [access date]
Lab experiment to test effects of short-term exposure to live coral from corals, Porites lobata, Pocillopora sp., Porites rus, on Caerasignum maximum larvae. Dataset Description: <p>These datasets all provide data for the settlement of <em>Ceraesignum</em> (previously <em>Dendropoma</em>) <em>maximum</em> to live coral.</p>
<p><strong>Related Datasets:</strong></p>
<ul>
<li>Experiment 1 day:&nbsp;<a href="https://www.bco-dmo.org/dataset/722097%C2%A0" style="color: rgb(0, 102, 153); margin: 0px; padding: 0px; border: 0px; font-style: inherit; font-variant: inherit; font-weight: inherit; font-stretch: inherit; font-size: inherit; line-height: inherit; font-family: inherit; vertical-align: baseline; text-decoration-line: none;">https://www.bco-dmo.org/dataset/722097</a></li>
<li>Experiment 2 hours:&nbsp;<a href="https://www.bco-dmo.org/dataset/722118" style="color: rgb(0, 102, 153); margin: 0px; padding: 0px; border: 0px; font-style: inherit; font-variant: inherit; font-weight: inherit; font-stretch: inherit; font-size: inherit; line-height: inherit; font-family: inherit; vertical-align: baseline; text-decoration-line: none;">https://www.bco-dmo.org/dataset/722118</a>&nbsp;</li>
<li>Experiment 3 minutes:&nbsp;<a href="https://www.bco-dmo.org/dataset/722135" style="color: rgb(0, 102, 153); margin: 0px; padding: 0px; border: 0px; font-style: inherit; font-variant: inherit; font-weight: inherit; font-stretch: inherit; font-size: inherit; line-height: inherit; font-family: inherit; vertical-align: baseline; text-decoration-line: none;">https://www.bco-dmo.org/dataset/722135</a>&nbsp;(The current page.)</li>
<li>Settlement to Quadrats:&nbsp;<a href="https://www.bco-dmo.org/dataset/722208" style="color: rgb(0, 102, 153); margin: 0px; padding: 0px; border: 0px; font-style: inherit; font-variant: inherit; font-weight: inherit; font-stretch: inherit; font-size: inherit; line-height: inherit; font-family: inherit; vertical-align: baseline; text-decoration-line: none;">https://www.bco-dmo.org/dataset/722208</a></li>
<li>Settlement to Rubble:&nbsp;<a href="https://www.bco-dmo.org/dataset/722226%C2%A0" style="color: rgb(0, 102, 153); margin: 0px; padding: 0px; border: 0px; font-style: inherit; font-variant: inherit; font-weight: inherit; font-stretch: inherit; font-size: inherit; line-height: inherit; font-family: inherit; vertical-align: baseline; text-decoration-line: none;">https://www.bco-dmo.org/dataset/722226&nbsp;</a></li>
</ul> Methods and Sampling: <p><em>Ceraesignum maximum</em> larvae were obtained from field- collected adults. Individual adult <em>C. maximum</em> were chiseled from the coral matrix intact in their tubes, transported to the laboratory in coolers of seawater, and their brooding status ascertained by gently poking each snail until it retracted deep into its shell. If late-stage capsules were observed attached to the inside of the shell, a mesh-sided cage (mesh = 150 µm) was secured around the tube with cable-ties, and the adult (with mesh enclosing the openings to their tubes) was then placed in a large tank with flowing seawater. Swimming larvae were released by females after 1–3 days.</p>
<p>Fragments (approximately 2x3 cm) of live coral were collected from the lagoon on the morning of each experiment and left for 2 h in flowing ambient seawater to recover. Fragments were examined under a microscope prior to each experiment to ensure that polyps were extended.</p>
<p>For this experiment:</p>
<p>Fragments of each coral species were placed into tubs with 500 ml filtered seawater (n = 4 replicate tubs for each treatment). 20-25 3-day posthatch larvae from a single female (number 4) were added to each tub. Larvae were pipetted out very slowly and released a few cm above the coral, ensuring the velum was extended and that larvae would exit the pipette swimming in a trajectory that would bring them slowly into contact with the coral polyps. A dissecting microscope was used to observe as many larvae as possible as they came into contact with coral polyps. After approximately 5 min, as many larvae as could be found were collected from each dish with a pipette and scored as live or dead. Live larvae were placed in a petri dish with filtered seawater for 2 h and then examined for recovery. Larvae were observed for several min before a determination was made about their recovery status. Larvae were considered ‘recovered’ if they were swimming, or if the velum was extended or was in the process of being extended, and the velar cilia were visibly beating. Larvae judged to be dead did not recovered after 2 h.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1130359 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1130359
onGoing
Nicole Phillips
Victoria University of Wellington
04 4635233 ext 8049
School of Biological Sciences PO Box 600
Wellington
Wellington
6140
New Zeland
nicole.phillips@vuw.ac.nz
pointOfContact
Craig Osenberg
University of Georgia
706-713 2051
Odum School of Ecology University of Georgia
Athens
GA
30602
USA
osenberg@uga.edu
pointOfContact
Jeffrey Shima
Victoria University of Wellington
+64 4 463 6494
PO Box 600 Victoria University of Wellington
Wellington
6140
New Zealand
Jeffrey.Shima@vuw.ac.nz
pointOfContact
asNeeded
Dataset Version: 2017-10-05
Unknown
Treatment
number_dead
number_live_but_unrecovered
number_recovered
total
percent_live_recovered
pcnt_dead_alive_unrec
dissecting microscope
theme
None, User defined
treatment
count
No BCO-DMO term
featureType
BCO-DMO Standard Parameters
Inverted Microscope
instrument
BCO-DMO Standard Instruments
Osenberg_et_al_Moorea
service
Deployment Activity
Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences
https://www.bco-dmo.org/project/540411
Spatial patterns of coral-vermetid interactions: short-term effects and long-term consequences
<p><em>Description from NSF abstract:</em><br />
Ecological surprises are most likely to be manifest in diverse communities where many interactions remain uninvestigated. Coral reefs harbor much of the world's biodiversity, and recent studies by the investigators suggest that one overlooked, but potentially important, biological interaction involves vermetid gastropods. Vermetid gastropods are nonmobile, tube-building snails that feed via an extensive mucus net. Vermetids reduce coral growth by up to 80%, and coral survival by as much as 60%. Because effects vary among coral taxa, vermetids may substantially alter the structure of coral communities as well as the community of fishes and invertebrates that inhabit the coral reef.</p>
<p>The investigators will conduct a suite of experimental and observational studies that: 1) quantify the effects of four species of vermetids across coral species to assess if species effects and responses are concordant or idiosyncratic; 2) use meta-analysis to compare effects of vermetids relative to other coral stressors and determine the factors that influence variation in coral responses; 3) determine the role of coral commensals that inhabit the branching coral, Pocillopora, and evaluate how the development of the commensal assemblage modifies the deleterious effects of vermetids; 4) determine how vermetid mucus nets affect the local environment of corals and evaluate several hypotheses about proposed mechanisms; and 5) assess the long-term implications of vermetids on coral communities and the fishes and invertebrates that depend on the coral.</p>
<p><strong>Note: </strong>The Principal Investigator, Dr. Craig W. Osenberg, was at the University of Florida at the time the NSF award was granted. Dr. Osenberg moved to the University of Georgia during the summer of 2014 (<a href="http://www.bco-dmo.org/person/540414" target="_blank">current contact information</a>).</p>
Vermetids_Corals
largerWorkCitation
project
eng; USA
oceans
Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)
2017-10-05
Moorea, French Polynesia (-17.48 degrees S, -149.82 degrees W)
0
BCO-DMO catalogue of parameters from Lab experiment to test effects of short-term exposure to live coral from corals, Porites lobata, Pocillopora sp., Porites rus, on Caerasignum maximum larvae (Vermetids_Corals project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/722180.rdf
Name: Treatment
Units: unitless
Description: Coral species that larvae were exposed to (P.lobata = Porites lobata; P.rus = Porites rus; Pocillopora = Pocillopora sp.
http://lod.bco-dmo.org/id/dataset-parameter/722181.rdf
Name: number_dead
Units: unitless
Description: number of dead larvae
http://lod.bco-dmo.org/id/dataset-parameter/722182.rdf
Name: number_live_but_unrecovered
Units: unitless
Description: number of live larvae that did not recover after 2 hours removed from coral
http://lod.bco-dmo.org/id/dataset-parameter/722183.rdf
Name: number_recovered
Units: unitless
Description: number of live larvae that did recover after 2 hours post removal from coral
http://lod.bco-dmo.org/id/dataset-parameter/722184.rdf
Name: total
Units: unitless
Description: total number of live and dead larvae
http://lod.bco-dmo.org/id/dataset-parameter/722185.rdf
Name: percent_live_recovered
Units: percent
Description: percent of live larvae that recovered. percent live, recovered = number of live, recovered larvae/total larvae
http://lod.bco-dmo.org/id/dataset-parameter/722186.rdf
Name: pcnt_dead_alive_unrec
Units: percent
Description: percent of dead and live larvae that did not recover. percent dead + live but unrecovered = number of dead + number of live unrecovered/total larvae
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
470
https://datadocs.bco-dmo.org/file/6YYMlWWUr5YyxZ/Phillipsetal_2014_Expt3mins.csv
Phillipsetal_2014_Expt3mins.csv
Primary data file for dataset ID 722135
download
https://www.bco-dmo.org/dataset/722135/data/download
download
onLine
dataset
<p><em>Ceraesignum maximum</em> larvae were obtained from field- collected adults. Individual adult <em>C. maximum</em> were chiseled from the coral matrix intact in their tubes, transported to the laboratory in coolers of seawater, and their brooding status ascertained by gently poking each snail until it retracted deep into its shell. If late-stage capsules were observed attached to the inside of the shell, a mesh-sided cage (mesh = 150 µm) was secured around the tube with cable-ties, and the adult (with mesh enclosing the openings to their tubes) was then placed in a large tank with flowing seawater. Swimming larvae were released by females after 1–3 days.</p>
<p>Fragments (approximately 2x3 cm) of live coral were collected from the lagoon on the morning of each experiment and left for 2 h in flowing ambient seawater to recover. Fragments were examined under a microscope prior to each experiment to ensure that polyps were extended.</p>
<p>For this experiment:</p>
<p>Fragments of each coral species were placed into tubs with 500 ml filtered seawater (n = 4 replicate tubs for each treatment). 20-25 3-day posthatch larvae from a single female (number 4) were added to each tub. Larvae were pipetted out very slowly and released a few cm above the coral, ensuring the velum was extended and that larvae would exit the pipette swimming in a trajectory that would bring them slowly into contact with the coral polyps. A dissecting microscope was used to observe as many larvae as possible as they came into contact with coral polyps. After approximately 5 min, as many larvae as could be found were collected from each dish with a pipette and scored as live or dead. Live larvae were placed in a petri dish with filtered seawater for 2 h and then examined for recovery. Larvae were observed for several min before a determination was made about their recovery status. Larvae were considered ‘recovered’ if they were swimming, or if the velum was extended or was in the process of being extended, and the velar cilia were visibly beating. Larvae judged to be dead did not recovered after 2 h.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing:</strong></p>
<ul>
<li>added conventional header with dataset name, PI name, version date</li>
<li>modified parameter names to conform with BCO-DMO naming conventions</li>
<li>blank values replaced with no data value 'nd'.</li>
</ul>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
dissecting microscope
dissecting microscope
PI Supplied Instrument Name: dissecting microscope PI Supplied Instrument Description:Tubs were maintained in a flowthrough seawater table and examined after 24 h under a dissecting microscope. Instrument Name: Inverted Microscope Instrument Short Name: Instrument Description: An inverted microscope is a microscope with its light source and condenser on the top, above the stage pointing down, while the objectives and turret are below the stage pointing up. It was invented in 1850 by J. Lawrence Smith, a faculty member of Tulane University (then named the Medical College of Louisiana).
Inverted microscopes are useful for observing living cells or organisms at the bottom of a large container (e.g. a tissue culture flask) under more natural conditions than on a glass slide, as is the case with a conventional microscope. Inverted microscopes are also used in micromanipulation applications where space above the specimen is required for manipulator mechanisms and the microtools they hold, and in metallurgical applications where polished samples can be placed on top of the stage and viewed from underneath using reflecting objectives.
The stage on an inverted microscope is usually fixed, and focus is adjusted by moving the objective lens along a vertical axis to bring it closer to or further from the specimen. The focus mechanism typically has a dual concentric knob for coarse and fine adjustment. Depending on the size of the microscope, four to six objective lenses of different magnifications may be fitted to a rotating turret known as a nosepiece. These microscopes may also be fitted with accessories for fitting still and video cameras, fluorescence illumination, confocal scanning and many other applications. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
Deployment: Osenberg_et_al_Moorea
Osenberg_et_al_Moorea
Osenberg et al Moorea
Osenberg_et_al_Moorea
Craig Osenberg
University of Georgia
Osenberg et al Moorea