<div><p>Culturing: Cultures of Trichodesmium erythraeum strain IMS101 were maintained at the University of Southern California, Los Angeles, California, USA, in modified Aquil medium with no fixed nitrogen provided. Cultures were grown at 26ºC in a light:dark cycle of 12:12, and maintained under 120 µmol photons per m^2 s^-1.</p>
<p>Samples GSM2492342 and GSM2492343 were grown as noted above, but under 380 µatm CO2.</p>
<p>Samples GSM2492344 and GSM2492345 were grown as noted above, but under 800 µatm CO2.</p>
<p>Sampling: Cultures were filtered onto 5 µm polycarbonate filters during the middle of the photoperiod, flash frozen, and stored in liquid nitrogen until RNA extraction. </p></div>
NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures
<div><p>These data were derived from laboratory-maintained Trichodesmium erythraeum cultures and contain accessions and links to raw RNA-seq fastq files in NCBI’s Gene Expression Omnibus, accessible through GEO Series accession number <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94951" target="_blank">GSE94951</a>. The sample accession numbers corresponding to the low and high CO2 samples from this work are <a href="https://www.ncbi.nlm.nih.gov/biosample/?term=GSM2492342" target="_blank">GSM2492342</a>, <a href="https://www.ncbi.nlm.nih.gov/biosample/?term=GSM2492343" target="_blank">GSM2492343</a>, <a href="http://www.ncbi.nlm.nih.gov/biosample/?term=GSM2492344" target="_blank">GSM2492344</a>, and <a href="http://www.ncbi.nlm.nih.gov/biosample/?term=GSM2492345" target="_blank">GSM2492345</a>.</p>
<p>These data were reported in the paper (Lee et al., 2017) </p>
<div> </div></div>
Trichodesmium consortia FASTq accessions
<div><p><strong>BCO-DMO Processing Notes:</strong><br />
- created a table with a conventional header with dataset name, PI name, version date<br />
- records were compiled from NCBI website; accessions obtained from (Lee et al., 2017).<br />
- hyperlink were created to the NCBI accessions pages.</p></div>
726901
Trichodesmium consortia FASTq accessions
2018-02-14T13:44:26-05:00
2018-02-14T13:44:26-05:00
2023-07-07T16:10:26-04:00
urn:bcodmo:dataset:726901
NCBI accessions for raw RNA-seq fastq in 380 and 750 uatm CO2 from experiments conducted at the University of Southern California: deep metatranscriptomic sequencing of Trichodesmium enrichment cultures (HiCO2_AdaptCyano project)
false
Hutchins, D. A., Webb, E. A. (2018) NCBI accessions for raw RNA-seq fastq in 380 and 750 uatm CO2 from experiments conducted at the University of Southern California: deep metatranscriptomic sequencing of Trichodesmium enrichment cultures (HiCO2_AdaptCyano project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). Version Date 2018-02-14 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/726901 [access date]
true
false
2018-02-14
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