http://lod.bco-dmo.org/id/dataset/733173
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-04-11
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Counts of colonists collected from colonization plates at the East Pacific Rise (EPR) deep-sea vents (1998-2017)
2020-08-31
publication
2020-08-31
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-12-11
publication
https://doi.org/10.1575/1912/bco-dmo.733173.1
Lauren S. Mullineaux
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Mullineaux, L. (2020) Counts of colonists collected from colonization plates at the East Pacific Rise (EPR) deep-sea vents (1998-2017). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2020-08-31 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.733173.2 [access date]
EPR colonizer counts Dataset Description: <p>Counts of colonist species and morphogroups on post-eruption sandwiches (at P-vent) and pre-eruption blocks (at East Wall) near 9°50'N on the East Pacific Rise (EPR). Recovery date (months since January 2006 eruption), deployment habitat zone (H=Hot, W=Warm, C=Cool), sample ID, and recovery temperature (deg C) are presented for each sample. Species and morphogroups were matched to equal or lowest level taxon in the World Register of Marine Species (WoRMS). Data were provided using Darwin Core terms to enable harvesting by the Ocean Biodiversity Information System (OBIS).</p>
<p>Data are also provided in a wide format [see Data Files section] with&nbsp;columns for each sample which&nbsp;indicate monthsSinceEruption - Zone - samplerID - temperatureRecovered, e.g., 9-H-2-26.7 indicates nine months post-eruption, in zone hot, sampler ID 2, recovered at 26.7 deg C. Values in each of these columns indicate counts of individuals identified to that dataProviderName for that sample. Zeroes denote absence.&nbsp;</p>
<p>Spatiotemporal metadata for the samples are provided in Dataset: Colonization sampler log https://www.bco-dmo.org/dataset/733210. These data are published in&nbsp;Mullineaux et al (2012). doi:10.1371/journal.pone.0050015.</p> Methods and Sampling: <p>Colonists were collected on experimental surfaces (sandwiches) constructed from six 0.7-cm-thick Lexan plastic plates separated by 1 cm spacers, creating a lattice 10 cm on a side (Bayer et al, 2011; note in 1998 colonists were collected on basalt blocks). Sandwiches were deployed and recovered by the submersible Alvin or ROV Jason. Deployment durations were 4, 2, 11, 11, 43, 10, and 29 months respectively for the recoveries at 9, 11, 22, 33, 96, 106, and 135 months after an eruption that took place in January 2006. The thermal environment at the base of each sandwich was measured with the Alvin (or Jason) temperature probe on deployment and recovery for ca 1–2 min until a clear maximum value was obtained.</p>
<p>Species abundance was assessed on three replicate sandwiches for each treatment (e.g., from one habitat within a site at a particular recovery date). On recovery, each sandwich was placed in individual collection compartments for transport back to the ship. On board, sandwiches and their attached colonists were preserved in 80% ethanol, as were any individuals that had become detached in the compartment and were retained on a 63-µm sieve. In the laboratory, each surface was examined under a dissecting microscope and all metazoan colonists (including detached individuals &gt;1 mm) were enumerated and identified to species if possible.&nbsp;Additional identifications based on genetic barcoding are in progress using support from other sources.&nbsp; Those data will be added in future.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1356738 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1356738
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1829773 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1829773
completed
Lauren S. Mullineaux
Woods Hole Oceanographic Institution
508-289-2898
Redfield 1-20 MS #34
Woods Hole
MA
02543
USA
lmullineaux@whoi.edu
pointOfContact
asNeeded
Dataset Version: 2
Unknown
dataProviderName
scientificName
scientificNameID
AphiaID
eventID
decimalLatitude
decimalLongitude
eventDate
monthsSinceEruption
zone
samplerID
temperatureRecovered
individualCount
Lexan plastic plates/sandwiches
Dissecting microscope
temperature recorders (Hobo)
theme
None, User defined
taxon
taxon_code
event code
latitude
longitude
date
time_elapsed
site description
inst_serial_numb
water temperature at measurement depth
count
featureType
BCO-DMO Standard Parameters
colonization substrata
Lexan plastic 6-plate settlement panel
Microscope - Optical
ROV Jason
Temperature Logger
instrument
BCO-DMO Standard Instruments
AT26-10
AT15-12
AT15-14
AT15-26
AT15-38
AT3-19
AT26-23
AT37-12
service
Deployment Activity
East Pacific Rise, Pacific Ocean
East Pacific Rise vent area
Deep-sea hydrothermal vents, Pacific Ocean around Baha California and off Mexico
East Pacific Rise
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Effects of Disturbance and Larval Supply on Communities at Hydrothermal Vents
https://osprey.bco-dmo.org/project/472885
Effects of Disturbance and Larval Supply on Communities at Hydrothermal Vents
<p><em>NSF award abstract:</em><br />
The long-term aim of this project is to understand the effects of disturbance on species occurrence and regional diversity in vent systems. The investigator is working toward that goal by conducting field studies on larval dispersal and colonization processes, and by collaborating with theoretical ecologists. The present project investigates a unique set of field observations gathered from decade-long monitoring of vents before and after a recent catastrophic eruption on the East Pacific Rise (EPR). The specific objectives are to determine whether succession is deterministic (or are there alternative stable states?), and whether disturbance at one vent field can influence community structure on a larger spatial scale. Answering these questions requires characterization of larval exchange between vents and of the effect of pioneer colonists on successional trajectory. The approach is to characterize species composition of larvae and colonists at three vent sites on the EPR: one that was disturbed by the eruption (9 degrees 50 minutes N) and two that remained undisturbed (9 degrees 47 minutes N and 9 degrees 30 minutes N). The investigators are running out of time to process the samples, because they degrade over time and the specimens are at risk of losing morphological detail which is critical for species identification. This award has modest funding to focus specifically on species identification and enumeration, without attempting to interface with models or population genetic analyses. These will come later.</p>
<p>The question of how vent communities persist despite living in patchy, ephemeral habitat has intrigued scientists since the discovery of vents in the late 1970s. A necessary synthesis of the influence of larval connectivity on metacommunity dynamics at the regional scale continues to elude us. This project works toward that synthesis by characterizing critical aspects of larval exchange and community succession at vents on the well-studied EPR. This study has general application to vent systems globally because it challenges the assumption that vent succession is deterministic, and it will contribute to our understanding of spatial scales of larval connectivity. The data on larval exchange and community resilience that will result from this study are precisely the kind needed for metapopulations modeling, for prediction of vent community response to anthropogenic events such as seafloor mining, and to inform management efforts at the Marianas Trench Marine National Monument.</p>
Larval supply at EPR vents
largerWorkCitation
project
Trajectories in functional diversity after disturbance at vents on the East Pacific Rise
https://osprey.bco-dmo.org/project/783674
Trajectories in functional diversity after disturbance at vents on the East Pacific Rise
<p><em>NSF Award Abstract:</em><br />
Hydrothermal vents support oases of life in the deep sea and are inhabited by unusual organisms that use chemical energy instead of photosynthesis as the basis of their food web. However, because the vents occur in geologically active areas of the seafloor, entire communities can be eradicated by catastrophic natural disturbances such as eruptions. The main objectives of this project are to quantify how quickly these communities recover from catastrophic disturbance and to determine what processes influence their resilience. The project focuses on both the structure (species diversity) and function (trait diversity) of the communities. The investigators will examine vents on an active segment of the East Pacific Rise where eruptive disturbance occurs on decadal time scales. These activities will create an unprecedented long-term (>14-year) quantitative time-series of colonist species composition and function. The application of trait-based analysis to the question of biological succession at vents has the potential to change the way we think about resilience in other patchy, transient and regionally-connected ecosystems. By considering how traits change over time, the researchers can untangle which species-level characteristics most influence abundance and distribution. The project objectives have broad significance with the growing potential for human-caused disturbances at deep-sea vents through deep-sea mining. Additional impacts include strengthening participation of under-represented minorities in marine science and contributing to international database development for functional traits of deep-sea vent species.</p>
<p>The unique, chemosynthesis-fueled fauna inhabiting deep-sea hydrothermal vents are subject to tectonic and eruptive disturbance that can eradicate entire communities. The main objectives of this project are to quantify how quickly these communities recover from catastrophic disturbance and to determine what processes influence their resilience. The focus is on vents on an active segment of the East Pacific Rise where eruptive disturbance occurs on decadal time scales. Field data on colonization and larval supply are used to characterize not only species succession but also the trajectory of functional diversity after a recent (2006) eruption. A new, promising approach to the colonization studies comes from incorporating trait-based analysis of functional diversity. Functional trait analysis is increasingly recognized in terrestrial and freshwater systems as a tool to holistically answer ecological questions, but trait analysis has not been often applied to marine systems. By considering how traits of incoming colonists change over time, the investigators can untangle which species-level factors most influence abundance and distribution. This project will create an unprecedented long-term (>14-year) quantitative time-series of colonist species composition and function. It includes multiple vent sites to encompass the full diversity of habitat conditions, and assesses both local processes and regional connectivity through larval supply. Field observations at individual sites contribute to broader questions when placed in the context of metacommunity theory. In this theoretical framework, field data such as this can be used to answer such questions as how the eradication of the vent community at a particular site affects the persistence of the metacommunity overall, and which vent sites contribute most to regional biodiversity.</p>
EPR Functional Diversity
largerWorkCitation
project
eng; USA
biota
oceans
East Pacific Rise, Pacific Ocean; East Pacific Rise vent area; Deep-sea hydrothermal vents, Pacific Ocean around Baha California and off Mexico; East Pacific Rise
-104.2919
-104.2912
9.8387
9.8421
1998-05-15
2017-04-29
From projects that focused on the following 2 locations: 1. Near 9 50’N on East Pacific Rise: 10 N 107 W 2. East Pacific Rise
0
BCO-DMO catalogue of parameters from Counts of colonists collected from colonization plates at the East Pacific Rise (EPR) deep-sea vents (1998-2017)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/821681.rdf
Name: dataProviderName
Units: unitless
Description: <p>Name used by the data provider to identify the taxon or morphogroup; not necessarily a scientific name.</p>
http://lod.bco-dmo.org/id/dataset-parameter/821682.rdf
Name: scientificName
Units: unitless
Description: <p>Name from World Register of Marine Species (WORMS) at the lowest level that matches the data provider name. This corresponds to Darwin Core term <a href="http://rs.tdwg.org/dwc/terms/scientificName.;">http://rs.tdwg.org/dwc/terms/scientificName.;</a> often the same as dataProviderName minus uncertainty additions such as sp./spp./unk A/etc.</p>
http://lod.bco-dmo.org/id/dataset-parameter/821683.rdf
Name: scientificNameID
Units: unitless
Description: <p>Machine-readable Life Science Identifier (LSID) containing the AphiaID from World Register of Marine Species at the lowest level that matches the data provider name. This corresponds to Darwin Core term <a href="http://rs.tdwg.org/dwc/terms/scientificNameID">http://rs.tdwg.org/dwc/terms/scientificNameID</a>.</p>
http://lod.bco-dmo.org/id/dataset-parameter/821684.rdf
Name: AphiaID
Units: unitless
Description: <p>Numerical identifier from World Register of Marine Species at the lowest level that matches the data provider name.</p>
http://lod.bco-dmo.org/id/dataset-parameter/821685.rdf
Name: eventID
Units: unitless
Description: <p>Unique identifier for the sample as an Event. This corresponds to Darwin Core term <a href="http://rs.tdwg.org/dwc/terms/eventID">http://rs.tdwg.org/dwc/terms/eventID</a>.</p>
http://lod.bco-dmo.org/id/dataset-parameter/821686.rdf
Name: decimalLatitude
Units: decimal degrees
Description: <p>sample collection latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/821687.rdf
Name: decimalLongitude
Units: decimal degrees
Description: <p>sample collection longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/821688.rdf
Name: eventDate
Units: unitless
Description: <p>event date formatted as yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/821689.rdf
Name: monthsSinceEruption
Units: months
Description: <p>The number of months since eruption</p>
http://lod.bco-dmo.org/id/dataset-parameter/821690.rdf
Name: zone
Units: unitless
Description: <p>Deployment habitat zone description: H=hot; W=warm; C=cool</p>
http://lod.bco-dmo.org/id/dataset-parameter/821691.rdf
Name: samplerID
Units: unitless
Description: <p>Identification number for each colonization sampler</p>
http://lod.bco-dmo.org/id/dataset-parameter/821692.rdf
Name: temperatureRecovered
Units: degrees Celsius
Description: <p>temperature at recovery</p>
http://lod.bco-dmo.org/id/dataset-parameter/821693.rdf
Name: individualCount
Units: specimens
Description: <p>The number of individuals recovered from settling plate. This corresponds to Darwin Core term <a href="http://rs.tdwg.org/dwc/terms/individualCount">http://rs.tdwg.org/dwc/terms/individualCount</a>.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
14135
https://darchive.mblwhoilibrary.org/bitstream/1912/26171/1/Pvent_P-S_135_supptable1_submit_merged_wide_106.csv
download
488605
https://darchive.mblwhoilibrary.org/bitstream/1912/26171/2/dataset-733173_all-taxa-colonization-counts__v2.tsv
download
7639
https://darchive.mblwhoilibrary.org/bitstream/1912/24984/1/dataset-733173_gastropod-colonization-counts__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.733173.1
download
onLine
dataset
<p>Colonists were collected on experimental surfaces (sandwiches) constructed from six 0.7-cm-thick Lexan plastic plates separated by 1 cm spacers, creating a lattice 10 cm on a side (Bayer et al, 2011; note in 1998 colonists were collected on basalt blocks). Sandwiches were deployed and recovered by the submersible Alvin or ROV Jason. Deployment durations were 4, 2, 11, 11, 43, 10, and 29 months respectively for the recoveries at 9, 11, 22, 33, 96, 106, and 135 months after an eruption that took place in January 2006. The thermal environment at the base of each sandwich was measured with the Alvin (or Jason) temperature probe on deployment and recovery for ca 1–2 min until a clear maximum value was obtained.</p>
<p>Species abundance was assessed on three replicate sandwiches for each treatment (e.g., from one habitat within a site at a particular recovery date). On recovery, each sandwich was placed in individual collection compartments for transport back to the ship. On board, sandwiches and their attached colonists were preserved in 80% ethanol, as were any individuals that had become detached in the compartment and were retained on a 63-µm sieve. In the laboratory, each surface was examined under a dissecting microscope and all metazoan colonists (including detached individuals &gt;1 mm) were enumerated and identified to species if possible.&nbsp;Additional identifications based on genetic barcoding are in progress using support from other sources.&nbsp; Those data will be added in future.</p>
Specified by the Principal Investigator(s)
<p>Data cleaning and merging with taxonomic identifiers were performed with code available on GitHub:<br />
https://github.com/sbeaulieu/EPR-traits/blob/master/Pvent_data_cleaning_BCODMO.R</p>
<p>The *Laminatubus alvini group may include small Protis hydrothermica; thus, the lowest taxonomic match is at family rank.</p>
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- added latitude, longitude, and date, obtained from the sampling log dataset (Colonization sampler log,&nbsp;https://www.bco-dmo.org/dataset/733210)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: PI Supplied Instrument Description: Lexan plastic 6-plate settlement panel Instrument Name: colonization substrata Instrument Short Name: Instrument Description: Natural or artificial materials deployed in a marine or artificial environment for a given period to act as standardised, passive settlement sampling devices (e.g. settlement plates). They are used to determine the extent of colonization and/or the diversity of settled organisms.
Lexan plastic plates/sandwiches
Lexan plastic plates/sandwiches
PI Supplied Instrument Name: Lexan plastic plates/sandwiches Instrument Name: Lexan plastic 6-plate settlement panel Instrument Short Name:Colonization sandwich Instrument Description: An artificial colonization substrate, sometimes referred to as a "colonization sandwich", that is made of 6 Lexan plastic sheets separated from each other by spacers. It is used to determine the extent of colonization and/or the diversity of settled organisms in a marine or artificial environment.
Dissecting microscope
Dissecting microscope
PI Supplied Instrument Name: Dissecting microscope PI Supplied Instrument Description:Used to identify specimens found on the colonization plates. Instrument Name: Microscope - Optical Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope". Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB05/
PI Supplied Instrument Name: Instrument Name: ROV Jason Instrument Short Name:ROV Jason Instrument Description: The Remotely Operated Vehicle (ROV) Jason is operated by the Deep Submergence Laboratory (DSL) at Woods Hole Oceanographic Institution (WHOI). WHOI engineers and scientists designed and built the ROV Jason to give scientists access to the seafloor that didn't require them leaving the deck of the ship. Jason is a two-body ROV system. A 10-kilometer (6-mile) fiber-optic cable delivers electrical power and commands from the ship through Medea and down to Jason, which then returns data and live video imagery. Medea serves as a shock absorber, buffering Jason from the movements of the ship, while providing lighting and a bird’s eye view of the ROV during seafloor operations. During each dive (deployment of the ROV), Jason pilots and scientists work from a control room on the ship to monitor Jason’s instruments and video while maneuvering the vehicle and optionally performing a variety of sampling activities. Jason is equipped with sonar imagers, water samplers, video and still cameras, and lighting gear. Jason’s manipulator arms collect samples of rock, sediment, or marine life and place them in the vehicle’s basket or on "elevator" platforms that float heavier loads to the surface. More information is available from the operator site at URL. https://ndsf.whoi.edu/jason/
temperature recorders (Hobo)
temperature recorders (Hobo)
PI Supplied Instrument Name: temperature recorders (Hobo) PI Supplied Instrument Description:Used to track the in situ temperature during colonization at the vent zones. Instrument Name: Temperature Logger Instrument Short Name: Instrument Description: Records temperature data over a period of time.
Cruise: AT26-10
AT26-10
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-10
Stefan M. Sievert
Woods Hole Oceanographic Institution
http://dmoserv3.bco-dmo.org/data_docs/Microbe_Vent_Communities/AT26-10_Cruise_Report_v2_2015-07-09.pdf
Report describing AT26-10
Cruise: AT15-12
AT15-12
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-12
Andreas Thurnherr
Lamont-Doherty Earth Observatory
http://datadocs.bco-dmo.org/docs/Larval_Supply_EPR_Vents/data_docs/AT15-12_LADDER-1_Cruise_Report_36250.pdf
Report describing AT15-12
Cruise: AT15-14
AT15-14
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-14
James R. Ledwell
Woods Hole Oceanographic Institution
http://datadocs.bco-dmo.org/docs/Larval_Supply_EPR_Vents/data_docs/AT15-14_LADDER-2_Cruise_Report_39303.pdf
Report describing AT15-14
Cruise: AT15-26
AT15-26
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-26
Lauren S. Mullineaux
Woods Hole Oceanographic Institution
http://datadocs.bco-dmo.org/docs/Larval_Supply_EPR_Vents/data_docs/AT15-26_LADDER-3_Cruise_Report_Feb4_36252.pdf
Report describing AT15-26
Cruise: AT15-38
AT15-38
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT15-38
Stefan M. Sievert
Woods Hole Oceanographic Institution
Cruise: AT3-19
AT3-19
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT3-19
Lauren S. Mullineaux
Woods Hole Oceanographic Institution
Cruise: AT26-23
AT26-23
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT26-23
Stefan M. Sievert
Woods Hole Oceanographic Institution
Cruise: AT37-12
AT37-12
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT37-12
Stefan M. Sievert
Woods Hole Oceanographic Institution
http://datadocs.bco-dmo.org/docs/Vent_O2_NO3_Roles/data_docs/AT37-12_Cruise_Report.pdf
Report describing AT37-12
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel