http://lod.bco-dmo.org/id/dataset/734608
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-04-27
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Hydrographic data from the CTD mounted on the trace metal rosette (TMR) aboard R/V Falkor cruise (160115) during the ProteOMZ expedition in the Central Pacific in 2016.
2018-05-01
publication
2018-05-01
revision
BCO-DMO Linked Data URI
2018-05-01
creation
http://lod.bco-dmo.org/id/dataset/734608
Mak A. Saito
Woods Hole Oceanographic Institution
principalInvestigator
Alyson E. Santoro
University of California-Santa Barbara
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Saito, M. A., Santoro, A. E. (2018) Hydrographic data from the CTD mounted on the trace metal rosette (TMR) aboard R/V Falkor cruise (160115) during the ProteOMZ expedition in the Central Pacific in 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-05-01 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/734608 [access date]
Hydrographic data files from the SeaBird SBE19 CTD mounted on the trace metal rosette (TMR). Dataset Description: <p>Hydrographic data files from the SeaBird SBE19 CTD mounted on the trace metal rosette (TMR).</p> Methods and Sampling: <p>Data were collected using the Trace Metal Rosette (TMR, Sea-Bird SEACAT 19+), equipped standard conductivity, temperature and pressure sensors, as well as an added optional SBE 43 dissolved oxygen sensor. All four sensors were factory refurbished/calibrated immediately prior to the expedition in November of 2015 by Sea-Bird Electronics (Bellevue WA).</p>
<p>Notes on CTD/O2 data acquisition and processing using Sea-Bird hardware and software. The GO-SHIP Repeat Hydrography Manual: A Collection of Expert Reports and Guidelines. IOCCP Perort No. 14, ICPO Publication Series No. 134, v. 1. 2010.</p>
<p>Location:&nbsp;Tropical/equatorial Pacific along 150º W; Honolulu, Hawai’i to Pape'ete, French Polynesia</p>
Funding provided by Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) Award Number: GBMF3782 Award URL: https://www.moore.org/grant-detail?grantId=GBMF3782
Funding provided by Alfred P. Sloan Foundation (Sloan) Award Number: Unknown ProteOMZ Sloan Foundation
Funding provided by Schmidt Ocean Institute (SOI) Award Number: R/V Falkor 160115 SOI ProteOMZ Expedition
completed
Mak A. Saito
Woods Hole Oceanographic Institution
508-289-2393
266 Woods Hole Rd. MS #51 Watson Lab
Woods Hole
MA
02543
USA
msaito@whoi.edu
pointOfContact
Alyson E. Santoro
University of California-Santa Barbara
805-893-5318
2155 Marine Biotech Lab
Santa Barbara
CA
93106
USA
asantoro@ucsb.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
PrdM
DepSM
Tv290C
C0mS/cm
Sal00
Potemp090C
Density00
Sigma-E00
Sbeox0Mm/Kg
Flag
Trace metal rosette
theme
None, User defined
water pressure
depth
temperature of sample or a generic measurement (not in-situ water temp)
conductivity
salinity
potential temperature
density
sigma-t
dissolved Oxygen
flag
featureType
BCO-DMO Standard Parameters
Trace Metal Bottle
instrument
BCO-DMO Standard Instruments
FK160115
service
Deployment Activity
Central Pacific
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean
https://schmidtocean.org/cruise/investigating-life-without-oxygen-in-the-tropical-pacific/#team
The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean
<p>From Schmidt Ocean Institute's ProteOMZ Project page:</p>
<p>Rising temperatures, ocean acidification, and overfishing have now gained widespread notoriety as human-caused phenomena that are changing our seas. In recent years, scientists have increasingly recognized that there is yet another ingredient in that deleterious mix: a process called deoxygenation that results in less oxygen available in our seas.</p>
<p>Large-scale ocean circulation naturally results in low-oxygen areas of the ocean called oxygen deficient zones (ODZs). The cycling of carbon and nutrients – the foundation of marine life, called biogeochemistry – is fundamentally different in ODZs than in oxygen-rich areas. Because researchers think deoxygenation will greatly expand the total area of ODZs over the next 100 years, studying how these areas function now is important in predicting and understanding the oceans of the future. This first expedition of 2016 led by Dr. Mak Saito from the Woods Hole Oceanographic Institution (WHOI) along with scientists from University of Maryland Center for Environmental Science, University of California Santa Cruz, and University of Washington aimed to do just that, investigate ODZs.</p>
<p>During the 28 day voyage named “ProteOMZ,” researchers aboard R/V <em>Falkor </em>traveled from Honolulu, Hawaii to Tahiti to describe the biogeochemical processes that occur within this particular swath of the ocean’s ODZs. By doing so, they contributed to our greater understanding of ODZs, gathered a database of baseline measurements to which future measurements can be compared, and established a new methodology that could be used in future research on these expanding ODZs.</p>
ProteOMZ (Proteomics in an Oxygen Minimum Zone)
largerWorkCitation
project
eng; USA
oceans
Central Pacific
-179.289931
-158.320979
-26.364655
10.544984
2016-01-16
2016-02-11
Central Pacific Ocean (Hawaii to Tahiti)
0
BCO-DMO catalogue of parameters from Hydrographic data from the CTD mounted on the trace metal rosette (TMR) aboard R/V Falkor cruise (160115) during the ProteOMZ expedition in the Central Pacific in 2016.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/734621.rdf
Name: PrdM
Units: db
Description: <p>Pressure, Strain Gauge</p>
http://lod.bco-dmo.org/id/dataset-parameter/734622.rdf
Name: DepSM
Units: meters
Description: <p>Depth of salt water</p>
http://lod.bco-dmo.org/id/dataset-parameter/734623.rdf
Name: Tv290C
Units: Celsius
Description: <p>Temperature [ITS-90]</p>
http://lod.bco-dmo.org/id/dataset-parameter/734624.rdf
Name: C0mS/cm
Units: mS per cm
Description: <p>Conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/734625.rdf
Name: Sal00
Units: Practical Salinity Units
Description: <p>Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/734626.rdf
Name: Potemp090C
Units: Celsius
Description: <p>Potential Temperature [ITS-90]</p>
http://lod.bco-dmo.org/id/dataset-parameter/734627.rdf
Name: Density00
Units: kilogram per meter cubed
Description: <p>Density</p>
http://lod.bco-dmo.org/id/dataset-parameter/734628.rdf
Name: Sigma-E00
Units: kilogram per meter cubed
Description: <p>Density [sigma-theta]</p>
http://lod.bco-dmo.org/id/dataset-parameter/734629.rdf
Name: Sbeox0Mm/Kg
Units: umol per kilogram
Description: <p>Oxygen, SBE 43</p>
http://lod.bco-dmo.org/id/dataset-parameter/734630.rdf
Name: Flag
Units: unitless
Description: <p>Flag</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1845346
https://datadocs.bco-dmo.org/file/4WnLx1XTBnVo86/FK160115_TMRCTD_asc_bin_hdr.zip
FK160115_TMRCTD_asc_bin_hdr.zip
download
https://osprey.bco-dmo.org/dataset/734608/data/download
download
onLine
dataset
<p>Data were collected using the Trace Metal Rosette (TMR, Sea-Bird SEACAT 19+), equipped standard conductivity, temperature and pressure sensors, as well as an added optional SBE 43 dissolved oxygen sensor. All four sensors were factory refurbished/calibrated immediately prior to the expedition in November of 2015 by Sea-Bird Electronics (Bellevue WA).</p>
<p>Notes on CTD/O2 data acquisition and processing using Sea-Bird hardware and software. The GO-SHIP Repeat Hydrography Manual: A Collection of Expert Reports and Guidelines. IOCCP Perort No. 14, ICPO Publication Series No. 134, v. 1. 2010.</p>
<p>Location:&nbsp;Tropical/equatorial Pacific along 150º W; Honolulu, Hawai’i to Pape'ete, French Polynesia</p>
Specified by the Principal Investigator(s)
<p>Data from the SBE19Plus were processed using Sea-Bird's SBE Data Processing software, v. 7.23.2.</p>
<p>SBE processing modules were applied in the following order: <em>Data Conversion</em>, <em>Filter</em>, <em>Align CTD</em>, <em>Cell Thermal Mass</em>, and <em>Loop Edit</em> were applied to the input variables using the parameters identified in the .cnv file header shown below. Oxygen data were first processed using the raw sensor voltage, then converted to units of umol/kg using the <em>Derive</em> module. Finally, <em>Wild Edit</em> was used to remove extraneous values and data were binned by depth into 1 m bins using <em>Bin Average</em> and converted to ASCII format using <em>ASCII Out</em>.</p>
<p>Sea state during the cruise and issues with the block used to deploy the TMR did not allow full in-water equilibration of the CTD sensors and pumping system prior to each cast. As a result, we recommend using data from the upcasts (designated with the prefix 'u' in the filename).</p>
<p># datcnv_date = May 19 2016 15:57:33, 7.23.2 [datcnv_vars = 5]<br />
# datcnv_in = C:\Users\Santoro\Desktop\Falkor_2016\TMR\160131TMR21CTDdata.hex C:\Users\Santoro\Desktop\Falkor_2016\TMR\SBE19plusV2_6801.xmlcon<br />
# datcnv_skipover = 0<br />
# datcnv_ox_hysteresis_correction = yes<br />
# filter_date = May 19 2016 15:58:16, 7.23.2<br />
# filter_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv<br />
# filter_low_pass_tc_A = 0.500<br />
# filter_low_pass_tc_B = 0.150<br />
# filter_low_pass_A_vars = depSM tv290C c0mS/cm sbeox0V<br />
# filter_low_pass_B_vars = prdM<br />
# alignctd_date = May 19 2016 15:58:49, 7.23.2<br />
# alignctd_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv<br />
# alignctd_adv = c0mS/cm 0.073 # celltm_date = May 19 2016 15:59:14, 7.23.2<br />
# celltm_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv<br />
# celltm_alpha = 0.0300, 0.0000<br />
# celltm_tau = 7.0000, 0.0000<br />
# celltm_temp_sensor_use_for_cond = primary,&nbsp;<br />
# loopedit_date = May 19 2016 16:00:13, 7.23.2<br />
# loopedit_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv<br />
# loopedit_minVelocity = 0.250&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;&nbsp;<br />
# loopedit_surfaceSoak: minDepth = 5.0, maxDepth = 20, useDeckPress = 1&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp;<br />
# loopedit_excl_bad_scans = yes<br />
# Derive_date = May 19 2016 16:03:09, 7.23.2 [derive_vars = 5]<br />
# Derive_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv C:\Users\Santoro\Desktop\Falkor_2016\TMR\SBE19plusV2_6801.xmlcon<br />
# derive_time_window_docdt = seconds: 2<br />
# derive_ox_tau_correction = yes<br />
# wildedit_date = May 19 2016 16:03:51, 7.23.2<br />
# wildedit_in = C:\Users\Santoro\Desktop\Falkor_2016\tmr_process\160131TMR21CTDdata.cnv<br />
# wildedit_pass1_nstd = 2.0<br />
# wildedit_pass2_nstd = 20.0<br />
# wildedit_pass2_mindelta = 0.000e+000<br />
# wildedit_npoint = 100<br />
# wildedit_vars = prdM depSM tv290C c0mS/cm sbeox0V sal00 potemp090C density00 sigma-È00 sbeox0Mm/Kg<br />
# wildedit_excl_bad_scans = yes<br />
# file_type = ascii</p>
<p><strong>BCO-DMO Data Processing Notes:</strong><strong> </strong></p>
<p>- Files were originally grouped in separate&nbsp;zip files, but&nbsp;were compressed into one to serve.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Trace metal rosette
Trace metal rosette
PI Supplied Instrument Name: Trace metal rosette PI Supplied Instrument Description:Used to collect samples Instrument Name: Trace Metal Bottle Instrument Short Name:TM Bottle Instrument Description: Trace metal (TM) clean rosette bottle used for collecting trace metal clean seawater samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/30/
Cruise: FK160115
FK160115
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel
FK160115
Mak A. Saito
Woods Hole Oceanographic Institution
https://service.rvdata.us/data/cruise/FK160115/doc/FK160115_OfficialCruiseReport_Saito_v3.pdf
Report describing FK160115
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel