http://lod.bco-dmo.org/id/dataset/734706 eng; USA utf8 dataset Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact 2018-04-30 ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) Annual growth chronologies of Siderastrea siderea and Pseudodiploria strigosa on the Florida Keys Reef Tract, 2015-2016 2018-04-30 publication 2018-04-30 revision Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA) 2019-12-09 publication https://doi.org/10.1575/1912/bco-dmo.734706.1 Karl D. Castillo University of North Carolina at Chapel Hill principalInvestigator Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. publisher Cite this dataset as: Castillo, K. (2018) Annual growth chronologies of Siderastrea siderea and Pseudodiploria strigosa on the Florida Keys Reef Tract, 2015-2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-04-30 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.734706.1 [access date] FKRT coral core data Dataset Description: &lt;p&gt;This dataset includes annual measurements of extension, density and calcification for 39 Siderastrea siderea cores and 31 Pseudodiploria strigosa cores from inner and outer reef sites spanning ~200 km of the Florida Keys Reef Tract.&lt;/p&gt; Methods and Sampling: &lt;p&gt;In May 2015 and 2016, skeletal cores were collected from 39 colonies of Siderastrea siderea and 31 colonies of Pseudodiploria strigosa at four pairs of inner-outer reef sites spanning the Florida Keys Reef Tract. All cores were extracted from the vertical growth axis of each coral colony using a CS Unitec model 2 1335 0010 hydraulic drill affixed with hollow extension rods and a 5 cm diameter wet diamond core bit. Collected cores were then stored in capped PVC tubes filled with 100% EtOH and transported to the University of North Carolina at Chapel Hill where they were air dried in preparation for sclerochronology development. To assess coral skeletal growth histories, all cores were scanned using X-ray computed tomography (CT) on a Siemens Biograph CT scanner at the Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. Coral cores were oriented lengthwise in rows of 4 to 5 on the scanning table, and equipment parameters were set to 120 kV, 250 mAs and 0.6 mm slice thickness with images reconstructed at 0.1 mm increments using the H70h “Very Sharp Spine” window.&lt;/p&gt; &lt;p&gt;All images were exported from the CT scanner as DICOM files, which were then 3-dimensionally reconstructed using the open-access Horos v2.0.2 medical image viewing software. High- and low-density bands were visualized using a 10-mm thick ‘Mean’ projection oriented as a rectangular prism through the center of each core. All boundaries between semiannual density bands were delineated manually and three sets of linear transects were drawn down the length of the cores using the Region of Interest (ROI) tool in Horos. Note, each set of transects was drawn within the exothecal space between corallite walls in order to standardize density measurements and to avoid aberrant density spikes in areas where the transect may otherwise have crossed a high-density corallite wall. Density and calcification measurements are therefore lower than would be expected if all features of the skeletal architecture were taken into account. Additionally, it has been shown that individual colonies may vary in their timing of high- and low-density band deposition due to intraspecific differences in tissue thickness and morphology (Barnes and Lough, 1996; Carricart-Ganivet, 2013). Thus, to approximate a consistent time standard between cores, we begin all chronologies at the top of the first fully deposited density band beneath the band of terminal growth. By-pixel density measurements were extracted from linear transects and average density was calculated for each semiannual high- and low-density band. Following DeCarlo et al (2015), nine coral standards of known density were included in every scanning session to convert density measurements from CT Hounsfield units to g cm-3. Average density of each standard was assessed in Hounsfield units using Horos and a standard curve was created for all cores scanned in the corresponding session. Linear extension (cm) was measured in Horos as the width of each annual density band couplet, and calcification (g cm-2 yr-1) was calculated as the product of density and linear extension.&lt;/p&gt; &lt;p&gt;Note, because cores were collected in subsequent years, the most recent year of growth (2015) was not included for cores collected in 2016 in order to keep the beginning of chronologies uniform throughout.&lt;/p&gt; &lt;p&gt;Analysis was based on previously published methods in Castillo et al (2011), Castillo et al (2012).&lt;/p&gt; &lt;p&gt;&amp;nbsp;&lt;/p&gt; Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1459522 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1459522 completed Karl D. Castillo University of North Carolina at Chapel Hill 919-843-8752 University of North Carolina Department of Marine Sciences 4202 Venable/Murray Hall, CB#3300, 123 South Road Chapel Hill NC 27517 USA kdcastil@email.unc.edu pointOfContact asNeeded Dataset Version: 1 Unknown species reefZone transect site coreID lat lon year linext density calc Siemens Biograph CT scanner CS Unitec model 2 1335 0010 hydraulic core drill theme None, User defined taxon_code site description transect site sample identification latitude longitude year growth density calcification featureType BCO-DMO Standard Parameters Computerized Tomography (CT) Scanner Drill Core instrument BCO-DMO Standard Instruments otherRestrictions otherRestrictions Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use. Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales http://www.unc.edu/~kdcastil/research.html Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales <p><em>Description from NSF award abstract:</em><br /> Rising global ocean surface temperatures have reduced coral growth rates, thereby negatively impacting the health of coral reef ecosystems worldwide. Recent studies on tropical reef building corals reveal that corals' growth in response to ocean warming may be influenced by their previous seawater temperature exposure - their thermal history. Although these recent findings highlight significant variability in coral growth in response to climate change, uncertainty remains as to the spatial scale at which corals' thermal history influences how they have responded to ocean warming and how they will likely respond to predicted future increases in ocean temperature. This study investigates the influence of thermal history on coral growth in response to recent and predicted seawater temperatures increases across four ecologically relevant spatial scales ranging from reef ecosystems, to reef communities, to reef populations, to an individual coral colony. By understanding how corals have responded in the past across a range of ecological scales, the Principal Investigator will be able to improve the ability to predict their susceptibility and resilience, which could then be applied to coral reef conservation in the face of climate change. This research project will broaden the participation of undergraduates from underrepresented groups and educate public radio listeners using minority voices and narratives. The scientist will leverage current and new partnerships to recruit and train minority undergraduates, thus allowing them to engage high school students near field sites in Florida, Belize, and Panama. Through peer advising, undergraduates will document this research on a digital news site for dissemination to the public. The voice of the undergraduates and scientist will ground the production of a public radio feature exploring the topic of acclimatization and resilience - a capacity for stress tolerance within coral reef ecosystems. This project will provide a postdoctoral researcher and several graduate students with opportunities for field and laboratory research training, teaching and mentoring, and professional development. The results will allow policy makers from Florida, the Mesoamerican Barrier Reef System countries, and several Central American countries to benefit from Caribbean-scale inferences that incorporate corals' physiological abilities, thereby improving coral reef management for the region.</p> <p>Coral reefs are at significant risk due to a variety of local and global scale anthropogenic stressors. Although various stressors contribute to the observed decline in coral reef health, recent studies highlight rising seawater temperatures due to increasing atmospheric carbon dioxide concentration as one of the most significant stressors influencing coral growth rates. However, there is increasing recognition of problems of scale since a coral's growth response to an environmental stressor may be conditional on the scale of description. This research will investigate the following research questions: (1) How has seawater temperature on reef ecosystems (Florida Keys Reef Tract, USA; Belize Barrier Reef System, Belize; and Bocas Del Toro Reef Complex, Panama), reef communities (inshore and offshore reefs), reef populations (individual reefs), and near reef colonies (individual colonies), varied in the past? (2) How has seawater temperature influenced rates of coral growth and how does the seawater temperature-coral growth relationship vary across these four ecological spatial scales? (3) Does the seawater temperature-coral growth relationship forecast rates of coral growth under predicted end-of-century ocean warming at the four ecological spatial scales? Long term sea surface temperature records and small-scale high-resolution in situ seawater temperature measurements will be compared with growth chronologies for the reef building corals Siderastrea siderea and Orbicella faveolata, two keystone species ubiquitously distributed throughout the Caribbean Sea. Nutrients and irradiance will be quantified via satellite-derived observations, in situ measurements, and established colorimetric protocols. Field and laboratory experiments will be combined to examine seawater temperature-coral growth relationships under recent and predicted end-of-century ocean warming at four ecologically relevant spatial scales. The findings of this study will help us bridge the temperature-coral growth response gap across ecologically relevant spatial scales and thus improve our understanding of how corals have responded to recent warming. This will lead to more meaningful predictions about future coral growth response to climate change.</p> Thermal History and Coral Growth largerWorkCitation project eng; USA biota oceans -81.64903 -80.09561 24.4956 25.5919 2015-05-01 2016-05-31 Western Caribbean 0 BCO-DMO catalogue of parameters from Annual growth chronologies of Siderastrea siderea and Pseudodiploria strigosa on the Florida Keys Reef Tract, 2015-2016 Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact http://lod.bco-dmo.org/id/dataset-parameter/734720.rdf Name: species Units: unitless Description: <p>Code for coral species sampled: ssid=Siderastrea siderea ; pstr=Pseudodiploria strigosa</p> http://lod.bco-dmo.org/id/dataset-parameter/734721.rdf Name: reefZone Units: unitless Description: <p>Inner vs outer reef</p> http://lod.bco-dmo.org/id/dataset-parameter/734722.rdf Name: transect Units: unitless Description: <p>Inner-outer reef site pair: ir or or</p> http://lod.bco-dmo.org/id/dataset-parameter/734723.rdf Name: site Units: unitless Description: <p>Sampling site identifier</p> http://lod.bco-dmo.org/id/dataset-parameter/734724.rdf Name: coreID Units: unitless Description: <p>Unique identifier for each coral core</p> http://lod.bco-dmo.org/id/dataset-parameter/734725.rdf Name: lat Units: decimal degrees Description: <p>Latitude; north is positive</p> http://lod.bco-dmo.org/id/dataset-parameter/734726.rdf Name: lon Units: decimal degrees Description: <p>Longitude; east is positive</p> http://lod.bco-dmo.org/id/dataset-parameter/734727.rdf Name: year Units: unitless Description: <p>Year corresponding to each density band</p> http://lod.bco-dmo.org/id/dataset-parameter/734728.rdf Name: linext Units: centimeters/year (cm/yr) Description: <p>Annual measurement of linear extension</p> http://lod.bco-dmo.org/id/dataset-parameter/734729.rdf Name: density Units: grams/centimeter^3 (g/cm3) Description: <p>Annual measurement of density</p> http://lod.bco-dmo.org/id/dataset-parameter/734730.rdf Name: calc Units: grams/centimeter^2/year (g/cm2/yr) Description: <p>Annual measurement of calcification</p> GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact 299072 https://darchive.mblwhoilibrary.org/bitstream/1912/24972/1/dataset-734706_florida-keys-coral-growth__v1.tsv download https://doi.org/10.1575/1912/bco-dmo.734706.1 download onLine dataset &lt;p&gt;In May 2015 and 2016, skeletal cores were collected from 39 colonies of Siderastrea siderea and 31 colonies of Pseudodiploria strigosa at four pairs of inner-outer reef sites spanning the Florida Keys Reef Tract. All cores were extracted from the vertical growth axis of each coral colony using a CS Unitec model 2 1335 0010 hydraulic drill affixed with hollow extension rods and a 5 cm diameter wet diamond core bit. Collected cores were then stored in capped PVC tubes filled with 100% EtOH and transported to the University of North Carolina at Chapel Hill where they were air dried in preparation for sclerochronology development. To assess coral skeletal growth histories, all cores were scanned using X-ray computed tomography (CT) on a Siemens Biograph CT scanner at the Biomedical Research Imaging Center, University of North Carolina at Chapel Hill. Coral cores were oriented lengthwise in rows of 4 to 5 on the scanning table, and equipment parameters were set to 120 kV, 250 mAs and 0.6 mm slice thickness with images reconstructed at 0.1 mm increments using the H70h “Very Sharp Spine” window.&lt;/p&gt; &lt;p&gt;All images were exported from the CT scanner as DICOM files, which were then 3-dimensionally reconstructed using the open-access Horos v2.0.2 medical image viewing software. High- and low-density bands were visualized using a 10-mm thick ‘Mean’ projection oriented as a rectangular prism through the center of each core. All boundaries between semiannual density bands were delineated manually and three sets of linear transects were drawn down the length of the cores using the Region of Interest (ROI) tool in Horos. Note, each set of transects was drawn within the exothecal space between corallite walls in order to standardize density measurements and to avoid aberrant density spikes in areas where the transect may otherwise have crossed a high-density corallite wall. Density and calcification measurements are therefore lower than would be expected if all features of the skeletal architecture were taken into account. Additionally, it has been shown that individual colonies may vary in their timing of high- and low-density band deposition due to intraspecific differences in tissue thickness and morphology (Barnes and Lough, 1996; Carricart-Ganivet, 2013). Thus, to approximate a consistent time standard between cores, we begin all chronologies at the top of the first fully deposited density band beneath the band of terminal growth. By-pixel density measurements were extracted from linear transects and average density was calculated for each semiannual high- and low-density band. Following DeCarlo et al (2015), nine coral standards of known density were included in every scanning session to convert density measurements from CT Hounsfield units to g cm-3. Average density of each standard was assessed in Hounsfield units using Horos and a standard curve was created for all cores scanned in the corresponding session. Linear extension (cm) was measured in Horos as the width of each annual density band couplet, and calcification (g cm-2 yr-1) was calculated as the product of density and linear extension.&lt;/p&gt; &lt;p&gt;Note, because cores were collected in subsequent years, the most recent year of growth (2015) was not included for cores collected in 2016 in order to keep the beginning of chronologies uniform throughout.&lt;/p&gt; &lt;p&gt;Analysis was based on previously published methods in Castillo et al (2011), Castillo et al (2012).&lt;/p&gt; &lt;p&gt;&amp;nbsp;&lt;/p&gt; Specified by the Principal Investigator(s) &lt;p&gt;&lt;strong&gt;BCO-DMO Processing Notes:&lt;/strong&gt;&lt;br /&gt; - added conventional header with dataset name, PI name, version date&lt;/p&gt; Specified by the Principal Investigator(s) asNeeded 7.x-1.1 Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact Siemens Biograph CT scanner Siemens Biograph CT scanner PI Supplied Instrument Name: Siemens Biograph CT scanner PI Supplied Instrument Description:Used to collect coral slice densities measurements. Settings: 120 kV, 250 mAs, 0.6 mm slice thickness with images reconstructed at 0.1 mm increments using the H70h “Very Sharp Spine” window. Instrument Name: Computerized Tomography (CT) Scanner Instrument Short Name:CT Scanner Instrument Description: A CT scan makes use of computer-processed combinations of many X-ray measurements taken from different angles to produce cross-sectional (tomographic) images (virtual "slices") of specific areas of a scanned object. CS Unitec model 2 1335 0010 hydraulic core drill CS Unitec model 2 1335 0010 hydraulic core drill PI Supplied Instrument Name: CS Unitec model 2 1335 0010 hydraulic core drill PI Supplied Instrument Description:Used to collect coral cores. Instrument Name: Drill Core Instrument Short Name:Drill Core Instrument Description: A core drill is a drill specifically designed to remove a cylinder of material, much like a hole saw. The material left inside the drill bit is referred to as the core. Core drills are used frequently in mineral exploration where the coring may be several hundred to several thousand feet in length. The core samples are recovered and examined by geologists for mineral percentages and stratigraphic contact points. This gives exploration companies the information necessary to begin or abandon mining operations in a particular area.