http://lod.bco-dmo.org/id/dataset/735079
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-05-04
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Symbiodinium algae in foraminifer and corals in St. John, USVI.
2018-05-17
publication
2018-05-17
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-03-25
publication
https://doi.org/10.1575/1912/bco-dmo.735079.1
Peter J. Edmunds
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Edmunds, P., Pochon, X. (2018) Symbiodinium algae in foraminifer and corals in St. John, USVI. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-05-17 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.735079.1 [access date]
Sites and symbionts Dataset Description: <p>Data published in Marine Biology paper entitled “Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands”.</p> Methods and Sampling: <p>Methodology in paper: (Pochon et al., 2014)</p>
Funding provided by NSF Division of Environmental Biology (NSF DEB) Award Number: DEB-0841441 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=0841441
Funding provided by NSF Division of Environmental Biology (NSF DEB) Award Number: DEB-1350146 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1350146
completed
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Name_of_Bay
Name_of_Site
Collection_Depth
Host
Sample_ID
A3
B1
C7
C12
C91
D1a
D2
G3_3
G3_4
F4_8
F5_1
H1
H5
theme
None, User defined
site
depth
species scientific name (binomial)
sample identification
count
featureType
BCO-DMO Standard Parameters
Edmunds_VINP
service
Deployment Activity
Great Lameshure Bay, St. John, US Virgin Island
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019
http://coralreefs.csun.edu/
LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019
<p><strong>Long Term Research in Environmental Biology (LTREB) in US Virgin Islands:</strong></p>
<p><em>From the NSF award abstract:</em><br />
In an era of growing human pressures on natural resources, there is a critical need to understand how major ecosystems will respond, the extent to which resource management can lessen the implications of these responses, and the likely state of these ecosystems in the future. Time-series analyses of community structure provide a vital tool in meeting these needs and promise a profound understanding of community change. This study focuses on coral reef ecosystems; an existing time-series analysis of the coral community structure on the reefs of St. John, US Virgin Islands, will be expanded to 27 years of continuous data in annual increments. Expansion of the core time-series data will be used to address five questions: (1) To what extent is the ecology at a small spatial scale (1-2 km) representative of regional scale events (10's of km)? (2) What are the effects of declining coral cover in modifying the genetic population structure of the coral host and its algal symbionts? (3) What are the roles of pre- versus post-settlement events in determining the population dynamics of small corals? (4) What role do physical forcing agents (other than temperature) play in driving the population dynamics of juvenile corals? and (5) How are populations of other, non-coral invertebrates responding to decadal-scale declines in coral cover? Ecological methods identical to those used over the last two decades will be supplemented by molecular genetic tools to understand the extent to which declining coral cover is affecting the genetic diversity of the corals remaining. An information management program will be implemented to create broad access by the scientific community to the entire data set.</p>
<p>The importance of this study lies in the extreme longevity of the data describing coral reefs in a unique ecological context, and the immense potential that these data possess for understanding both the patterns of comprehensive community change (i.e., involving corals, other invertebrates, and genetic diversity), and the processes driving them. Importantly, as this project is closely integrated with resource management within the VI National Park, as well as larger efforts to study coral reefs in the US through the NSF Moorea Coral Reef LTER, it has a strong potential to have scientific and management implications that extend further than the location of the study.</p>
St. John LTREB
largerWorkCitation
project
RUI-LTREB Renewal: Three decades of coral reef community dynamics in St. John, USVI: 2014-2019
http://coralreefs.csun.edu/
RUI-LTREB Renewal: Three decades of coral reef community dynamics in St. John, USVI: 2014-2019
<p>Describing how ecosystems like coral reefs are changing is at the forefront of efforts to evaluate the biological consequences of global climate change and ocean acidification. Coral reefs have become the poster child of these efforts. Amid concern that they could become ecologically extinct within a century, describing what has been lost, what is left, and what is at risk, is of paramount importance. This project exploits an unrivalled legacy of information beginning in 1987 to evaluate the form in which reefs will persist, and the extent to which they will be able to resist further onslaughts of environmental challenges. This long-term project continues a 27-year study of Caribbean coral reefs. The diverse data collected will allow the investigators to determine the roles of local and global disturbances in reef degradation. The data will also reveal the structure and function of reefs in a future with more human disturbances, when corals may no longer dominate tropical reefs.</p>
<p>The broad societal impacts of this project include advancing understanding of an ecosystem that has long been held emblematic of the beauty, diversity, and delicacy of the biological world. Proposed research will expose new generations of undergraduate and graduate students to natural history and the quantitative assessment of the ways in which our planet is changing. This training will lead to a more profound understanding of contemporary ecology at the same time that it promotes excellence in STEM careers and supports technology infrastructure in the United States. Partnerships will be established between universities and high schools to bring university faculty and students in contact with k-12 educators and their students, allow teachers to carry out research in inspiring coral reef locations, and motivate children to pursue STEM careers. Open access to decades of legacy data will stimulate further research and teaching.</p>
RUI-LTREB
largerWorkCitation
project
eng; USA
oceans
Great Lameshure Bay, St. John, US Virgin Island
-64.723
-64.723
18.32
18.32
2018-05-17
From projects that focused on the following 2 locations: 1. St. John, U.S. Virgin Islands; California State University Northridge 2. USVI
0
BCO-DMO catalogue of parameters from Symbiodinium algae in foraminifer and corals in St. John, USVI.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/746273.rdf
Name: Name_of_Bay
Units: unitless
Description: <p>Bay sampled</p>
http://lod.bco-dmo.org/id/dataset-parameter/746274.rdf
Name: Name_of_Site
Units: unitless
Description: <p>Study site</p>
http://lod.bco-dmo.org/id/dataset-parameter/746275.rdf
Name: Collection_Depth
Units: meters
Description: <p>Sampling depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/746276.rdf
Name: Host
Units: unitless
Description: <p>Host species sampled</p>
http://lod.bco-dmo.org/id/dataset-parameter/746277.rdf
Name: Sample_ID
Units: unitless
Description: <p>Sample ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/746278.rdf
Name: A3
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746279.rdf
Name: B1
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746280.rdf
Name: C7
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746281.rdf
Name: C12
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746282.rdf
Name: C91
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746283.rdf
Name: D1a
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746284.rdf
Name: D2
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746285.rdf
Name: G3_3
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746286.rdf
Name: G3_4
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746287.rdf
Name: F4_8
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746288.rdf
Name: F5_1
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746289.rdf
Name: H1
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
http://lod.bco-dmo.org/id/dataset-parameter/746290.rdf
Name: H5
Units: count
Description: <p>Number of Symbiodinium OTUs found in each sample</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3526
https://darchive.mblwhoilibrary.org/bitstream/1912/23901/1/dataset-735079_sites-and-symbionts__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.735079.1
download
onLine
dataset
<p>Methodology in paper: (Pochon et al., 2014)</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes:</strong></p>
<p>-Reformatted column names to comply with BCO-DMO standards<br />
-Removed special characters from data<br />
-Replaced all blank cells with nd</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Deployment: Edmunds_VINP
Edmunds_VINP
Virgin Islands National Park
shoreside
Edmunds_VINP
Peter J. Edmunds
California State University Northridge
Virgin Islands National Park
shoreside