The raw mass spectra files were searched against SEQUEST within Proteome Discoverer v2.2 software. Processed files were then loaded into Proteome Software and protein and peptide reports as well as and fasta files were exported. The files were modified slightly to map to the Protein Portal data model for submission to BCO-DMO.<\/p>\n
BCO-DMO Data Manager Notes:
\n* data version 1:\u00a02018-05-25 replaced by data version 2: 2019-01-02 which is a new version of the .fasta file which includes more proteins not present in the previous version.<\/p><\/div>","@type":"rdf:HTML"}],"http:\/\/purl.org\/dc\/terms\/identifier":[{"@value":"737611","@type":"xsd:int"}],"http:\/\/purl.org\/dc\/terms\/title":[{"@value":"ProteOMZ identified protein sequences"}],"http:\/\/purl.org\/dc\/terms\/date":[{"@value":"2018-05-25T13:41:55-04:00","@type":"xsd:dateTime"}],"http:\/\/purl.org\/dc\/terms\/created":[{"@value":"2018-05-25T13:41:55-04:00","@type":"xsd:dateTime"}],"http:\/\/purl.org\/dc\/terms\/modified":[{"@value":"2024-03-21T16:24:36-04:00","@type":"xsd:dateTime"}],"http:\/\/rdfs.org\/ns\/void#inDataset":[{"@id":"http:\/\/www.bco-dmo.org\/"}],"http:\/\/ocean-data.org\/schema\/namedGraph":[{"@value":"urn:bcodmo:dataset:737611","@type":"xsd:token"}],"http:\/\/ocean-data.org\/schema\/osprey_page":[{"@id":"https:\/\/www.bco-dmo.org\/dataset\/737611"}],"http:\/\/ocean-data.org\/schema\/identifier":[{"@value":"_:Identifier737611"}],"http:\/\/ocean-data.org\/schema\/hasDataManagementProcessing":[{"@value":"originally submitted file was attached to this dataset, no modifications.","@language":"en-US"}],"http:\/\/ocean-data.org\/schema\/datasetTitle":[{"@value":"FASTA file of identified protein sequences from the R\/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016","@language":"en-US"}],"http:\/\/ocean-data.org\/schema\/abstract":[{"@value":"FASTA file of protein identifications from FK160115 in 2016. Individual sequences of all proteins identified in the ProteOMZ Protein dataset (737630, see \"Related Datasets\" section). Each entry begins with a \u201c> \u201c and is followed by the ProteinIdentifier.","@language":"en-US"}],"http:\/\/purl.org\/dc\/terms\/rights":[{"@id":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"http:\/\/ocean-data.org\/schema\/deprecated":[{"@value":"false","@type":"xsd:boolean"}],"http:\/\/ocean-data.org\/schema\/temporalExtent":[{"@value":"_:temporalExtent737611"}],"http:\/\/ocean-data.org\/schema\/spatialCoverage":[{"@value":"_:spatialCoverage737611"}],"http:\/\/purl.org\/dc\/terms\/bibliographicCitation":[{"@value":"Saito, M. A. (2019) FASTA file of identified protein sequences from the R\/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 2) Version Date 2019-01-02 [if applicable, indicate subset used]. http:\/\/lod.bco-dmo.org\/id\/dataset\/737611 [access date]","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/validated":[{"@value":"false","@type":"xsd:boolean"}],"http:\/\/ocean-data.org\/schema\/versionLabel":[{"@value":"2","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/currentState":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset-current-state\/6"}],"http:\/\/ocean-data.org\/schema\/nodcTopic":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/nodc-dataset-topic\/156"}],"http:\/\/ocean-data.org\/schema\/datasetType":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset-type\/172"}],"http:\/\/ocean-data.org\/schema\/restricted":[{"@value":"false","@type":"xsd:boolean"}],"http:\/\/ocean-data.org\/schema\/hasAward":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/award\/646122"},{"@id":"http:\/\/lod.bco-dmo.org\/id\/award\/685695"}],"http:\/\/ocean-data.org\/schema\/hasAgentWithRole":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/person-role\/737615"},{"@id":"http:\/\/lod.bco-dmo.org\/id\/person-role\/751407"},{"@id":"http:\/\/lod.bco-dmo.org\/id\/person-role\/737616"}],"http:\/\/ocean-data.org\/schema\/hasDatasetURL":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data","@type":"xsd:anyURI"}],"http:\/\/purl.org\/dc\/terms\/language":[{"@value":"http:\/\/id.loc.gov\/vocabulary\/iso639-1\/en","@type":"xsd:anyURI"}],"http:\/\/xmlns.com\/foaf\/0.1\/homepage":[{"@id":"https:\/\/www.bco-dmo.org\/dataset\/737611"}],"http:\/\/purl.org\/dc\/terms\/issued":[{"@value":"2019-01-02","@type":"xsd:date"}],"http:\/\/purl.org\/dc\/terms\/publisher":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/www.w3.org\/ns\/dcat#distribution":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611#dcatDistribution"}],"http:\/\/www.w3.org\/ns\/dcat#contactPoint":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/person\/50985"}]},"_:frictionlessdata737611":{"@id":"_:frictionlessdata737611","@type":["http:\/\/ocean-data.org\/schema\/MetadataDownloadAffordance"],"http:\/\/schema.org\/subjectOf":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611"}],"http:\/\/schema.org\/name":[{"@value":"Datapackage.json","@type":"xsd:string"}],"http:\/\/schema.org\/alternateName":[{"@value":"Frictionless Data Package","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/affordedBy":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/schema.org\/target":[{"@value":"_:frictionlessdata737611entryPoint"}]},"_:frictionlessdata737611entryPoint":{"@id":"_:frictionlessdata737611entryPoint","@type":["http:\/\/schema.org\/EntryPoint"],"http:\/\/schema.org\/url":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/datapackage.json","@type":"xsd:anyURI"}],"http:\/\/schema.org\/contentType":[{"@value":"application\/vnd.datapackage+json","@type":"xsd:token"}]},"_:datasetdescription737611":{"@id":"_:datasetdescription737611","@type":["http:\/\/ocean-data.org\/schema\/MetadataDownloadAffordance"],"http:\/\/schema.org\/subjectOf":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611"}],"http:\/\/schema.org\/name":[{"@value":"PDF","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/affordedBy":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/schema.org\/target":[{"@value":"_:datasetdescription737611entryPoint"}]},"_:datasetdescription737611entryPoint":{"@id":"_:datasetdescription737611entryPoint","@type":["http:\/\/schema.org\/EntryPoint","http:\/\/ocean-data.org\/schema\/PdfDatasetDescription"],"http:\/\/schema.org\/url":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/Dataset_description.pdf","@type":"xsd:anyURI"}],"http:\/\/schema.org\/contentType":[{"@value":"application\/pdf","@type":"xsd:token"}]},"_:iso737611":{"@id":"_:iso737611","@type":["http:\/\/ocean-data.org\/schema\/MetadataDownloadAffordance"],"http:\/\/schema.org\/subjectOf":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611"}],"http:\/\/schema.org\/name":[{"@value":"ISO 19115-2 (NOAA Profile)","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/affordedBy":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/schema.org\/target":[{"@value":"_:iso737611entryPoint"}]},"_:iso737611entryPoint":{"@id":"_:iso737611entryPoint","@type":["http:\/\/schema.org\/EntryPoint","http:\/\/ocean-data.org\/schema\/ISOMetadata"],"http:\/\/schema.org\/url":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/iso","@type":"xsd:anyURI"}],"http:\/\/schema.org\/contentType":[{"@value":"application\/xml","@type":"xsd:token"}],"http:\/\/purl.org\/dc\/terms\/conformsTo":[{"@value":"http:\/\/www.isotc211.org\/2005\/gmd-noaa","@type":"xsd:anyURI"}]},"_:dublincore737611":{"@id":"_:dublincore737611","@type":["http:\/\/ocean-data.org\/schema\/MetadataDownloadAffordance"],"http:\/\/schema.org\/subjectOf":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611"}],"http:\/\/schema.org\/name":[{"@value":"Dublin Core","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/affordedBy":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/schema.org\/target":[{"@value":"_:dublincore737611entryPoint"}]},"_:dublincore737611entryPoint":{"@id":"_:dublincore737611entryPoint","@type":["http:\/\/schema.org\/EntryPoint"],"http:\/\/schema.org\/url":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/dublin-core","@type":"xsd:anyURI"}],"http:\/\/schema.org\/contentType":[{"@value":"application\/xml","@type":"xsd:token"}],"http:\/\/purl.org\/dc\/terms\/conformsTo":[{"@value":"http:\/\/purl.org\/dc\/elements\/1.1\/","@type":"xsd:anyURI"}]},"_:Identifier737611":{"@id":"_:Identifier737611","@type":["http:\/\/ocean-data.org\/schema\/Identifier","http:\/\/ocean-data.org\/schema\/BCODMOIdentifier","http:\/\/ocean-data.org\/schema\/OSPREY_v2_Node_dataset"],"http:\/\/ocean-data.org\/schema\/identifierScheme":[{"@id":"http:\/\/ocean-data.org\/schema\/IdentifierScheme_BCODMO_Version_2"}],"http:\/\/ocean-data.org\/schema\/identifierValue":[{"@value":"737611","@type":"xsd:token"}],"http:\/\/ocean-data.org\/schema\/resolvableURL":[{"@value":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611","@type":"xsd:anyURI"}]},"_:temporalExtent737611":{"@id":"_:temporalExtent737611","@type":["http:\/\/www.w3.org\/2006\/time#Interval"],"http:\/\/www.w3.org\/2000\/01\/rdf-schema#label":[{"@value":"2016-01-19 - 2016-01-28","@type":"xsd:string"}],"http:\/\/www.w3.org\/2006\/time#hasBeginning":[{"@value":"_:temporalExtent737611Start"}],"http:\/\/www.w3.org\/2006\/time#hasEnd":[{"@value":"_:temporalExtent737611End"}]},"_:temporalExtent737611Start":{"@id":"_:temporalExtent737611Start","@type":["http:\/\/www.w3.org\/2006\/time#Instant"],"http:\/\/www.w3.org\/2000\/01\/rdf-schema#label":[{"@value":"2016-01-19","@type":"xsd:string"}],"http:\/\/www.w3.org\/2006\/time#inXSDDate":[{"@value":"2016-01-19","@type":"xsd:date"}],"http:\/\/www.w3.org\/2006\/time#inDateTime":[{"@value":"_:temporalExtent737611StartDescription"}]},"_:temporalExtent737611StartDescription":{"@id":"_:temporalExtent737611StartDescription","@type":["http:\/\/www.w3.org\/2006\/time#DateTimeDescription"],"http:\/\/www.w3.org\/2006\/time#unitType":[{"@id":"http:\/\/www.w3.org\/2006\/time#unitDay"}],"http:\/\/www.w3.org\/2006\/time#day":[{"@value":"---19","@type":"xsd:gDay"}],"http:\/\/www.w3.org\/2006\/time#dayOfYear":[{"@value":"18","@type":"xsd:nonNegativeInteger"}],"http:\/\/www.w3.org\/2006\/time#dayOfWeek":[{"@id":"http:\/\/www.w3.org\/2006\/time#Tuesday"}],"http:\/\/www.w3.org\/2006\/time#month":[{"@value":"--01","@type":"xsd:gMonth"}],"http:\/\/www.w3.org\/2006\/time#year":[{"@value":"2016","@type":"xsd:gYear"}]},"_:temporalExtent737611End":{"@id":"_:temporalExtent737611End","@type":["http:\/\/www.w3.org\/2006\/time#Instant"],"http:\/\/www.w3.org\/2000\/01\/rdf-schema#label":[{"@value":"2016-01-28","@type":"xsd:string"}],"http:\/\/www.w3.org\/2006\/time#inXSDDate":[{"@value":"2016-01-28","@type":"xsd:date"}],"http:\/\/www.w3.org\/2006\/time#inDateTime":[{"@value":"_:temporalExtent737611EndDescription"}]},"_:temporalExtent737611EndDescription":{"@id":"_:temporalExtent737611EndDescription","@type":["http:\/\/www.w3.org\/2006\/time#DateTimeDescription"],"http:\/\/www.w3.org\/2006\/time#unitType":[{"@id":"http:\/\/www.w3.org\/2006\/time#unitDay"}],"http:\/\/www.w3.org\/2006\/time#day":[{"@value":"---28","@type":"xsd:gDay"}],"http:\/\/www.w3.org\/2006\/time#dayOfYear":[{"@value":"27","@type":"xsd:nonNegativeInteger"}],"http:\/\/www.w3.org\/2006\/time#dayOfWeek":[{"@id":"http:\/\/www.w3.org\/2006\/time#Thursday"}],"http:\/\/www.w3.org\/2006\/time#month":[{"@value":"--01","@type":"xsd:gMonth"}],"http:\/\/www.w3.org\/2006\/time#year":[{"@value":"2016","@type":"xsd:gYear"}]},"_:spatialCoverage737611":{"@id":"_:spatialCoverage737611","@type":["http:\/\/www.opengis.net\/ont\/sf#Polygon"],"http:\/\/purl.org\/dc\/terms\/source":[{"@value":"OSPREY","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/crs":[{"@value":"http:\/\/www.opengis.net\/def\/crs\/OGC\/1.3\/CRS84","@type":"xsd:anyURI"}],"http:\/\/ocean-data.org\/schema\/spatialCenter":[{"@value":"_:spatialCoverage737611centroid"}],"http:\/\/www.opengis.net\/ont\/geosparql#asWKT":[{"@value":" POLYGON((-157.3022 -0.4708, -139.1089 -0.4708, -139.1089 -0.4708, -139.1089 17.4465, -157.3022 17.4465, -157.3022 -0.4708))","@type":"odo:wktLiteral"}],"http:\/\/ocean-data.org\/schema\/boxLeftBoundary":[{"@value":"-157.3022","@type":"xsd:decimal"}],"http:\/\/ocean-data.org\/schema\/boxBottomBoundary":[{"@value":"-0.4708","@type":"xsd:decimal"}],"http:\/\/ocean-data.org\/schema\/boxRightBoundary":[{"@value":"-139.1089","@type":"xsd:decimal"}],"http:\/\/ocean-data.org\/schema\/boxTopBoundary":[{"@value":"17.4465","@type":"xsd:decimal"}]},"_:spatialCoverage737611centroid":{"@id":"_:spatialCoverage737611centroid","@type":["http:\/\/www.opengis.net\/ont\/sf#Point"],"http:\/\/www.w3.org\/2003\/01\/geo\/wgs84_pos#lat":[{"@value":"8.487850000000","@type":"xsd:decimal"}],"http:\/\/www.w3.org\/2003\/01\/geo\/wgs84_pos#lon":[{"@value":"-148.205550000000","@type":"xsd:decimal"}]},"_:datadocsURLentryPoint737611":{"@id":"_:datadocsURLentryPoint737611","@type":["http:\/\/schema.org\/EntryPoint"],"http:\/\/ocean-data.org\/schema\/redirectURL":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data\/download","@type":"xsd:anyURI"},{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data","@type":"xsd:anyURI"}],"http:\/\/schema.org\/url":[{"@value":"http:\/\/datadocs.bco-dmo.org\/data\/302\/ProteOMZ\/737611\/2\/data\/protein_sequences.fasta","@type":"xsd:anyURI"}],"http:\/\/schema.org\/contentType":[{"@value":"application\/octet-stream","@type":"xsd:token"}],"http:\/\/schema.org\/softwareApplication":[{"@id":"http:\/\/ocean-data.org\/schema\/SOFTWARE_BCODMO_DataDocs"}]},"_:datadocsURLAffordance737611":{"@id":"_:datadocsURLAffordance737611","@type":["http:\/\/ocean-data.org\/schema\/DataDownloadAffordance"],"http:\/\/schema.org\/subjectOf":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611"}],"http:\/\/schema.org\/name":[{"@value":"Download","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/affordedBy":[{"@id":"http:\/\/lod.bco-dmo.org\/id\/affiliation\/191"}],"http:\/\/schema.org\/target":[{"@value":"_:datadocsURLentryPoint737611"}]},"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611#dcatDistribution":{"@id":"http:\/\/lod.bco-dmo.org\/id\/dataset\/737611#dcatDistribution","@type":["http:\/\/www.w3.org\/ns\/dcat#Distribution"],"http:\/\/purl.org\/dc\/terms\/title":[{"@value":"ProteOMZ identified protein sequences"}],"http:\/\/purl.org\/dc\/terms\/modified":[{"@value":"2024-03-21T16:24:36-04:00","@type":"xsd:dateTime"}],"http:\/\/purl.org\/dc\/terms\/issued":[{"@value":"2019-01-02","@type":"xsd:date"}],"http:\/\/www.w3.org\/ns\/dcat#downloadURL":[{"@id":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data\/download"}],"http:\/\/www.w3.org\/ns\/dcat#mediaType":[{"@value":"application\/octet-stream","@type":"xsd:string"}]},"https:\/\/www.bco-dmo.org\/dataset\/737611\/data\/download":{"@id":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data\/download","@type":["http:\/\/purl.org\/dc\/terms\/FileFormat"],"http:\/\/purl.org\/dc\/terms\/format":[{"@value":"application\/octet-stream","@type":"xsd:string"}],"http:\/\/www.w3.org\/2000\/01\/rdf-schema#seeAlso":[{"@value":"https:\/\/www.bco-dmo.org\/dataset\/737611\/data\/download","@type":"xsd:anyURI"}]}}]}