http://lod.bco-dmo.org/id/dataset/737611
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-05-25
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016
2019-02-15
publication
2019-02-15
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2024-11-06
publication
https://doi.org/10.26008/1912/bco-dmo.737611.3
Mak A. Saito
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Saito, M. A. (2024) FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2019-02-15 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.737611.3 [access date]
FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016. Dataset Description: <p>These data are part of the Ocean Protein Portal "ProteOMZ" dataset (https://proteinportal.whoi.edu/; Saito et al., 2019).</p> Methods and Sampling:
Funding provided by Gordon and Betty Moore Foundation: Marine Microbiology Initiative (MMI) Award Number: GBMF3782 Award URL: https://www.moore.org/grant-detail?grantId=GBMF3782
Funding provided by Schmidt Ocean Institute (SOI) Award Number: R/V Falkor 160115 SOI ProteOMZ Expedition
completed
Mak A. Saito
Woods Hole Oceanographic Institution
508-289-2393
266 Woods Hole Rd. MS #51 Watson Lab
Woods Hole
MA
02543
USA
msaito@whoi.edu
pointOfContact
asNeeded
Dataset Version: 3
Unknown
FK160115
service
Deployment Activity
Central Pacific
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean
https://schmidtocean.org/cruise/investigating-life-without-oxygen-in-the-tropical-pacific/#team
The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean
<p>From Schmidt Ocean Institute's ProteOMZ Project page:</p>
<p>Rising temperatures, ocean acidification, and overfishing have now gained widespread notoriety as human-caused phenomena that are changing our seas. In recent years, scientists have increasingly recognized that there is yet another ingredient in that deleterious mix: a process called deoxygenation that results in less oxygen available in our seas.</p>
<p>Large-scale ocean circulation naturally results in low-oxygen areas of the ocean called oxygen deficient zones (ODZs). The cycling of carbon and nutrients – the foundation of marine life, called biogeochemistry – is fundamentally different in ODZs than in oxygen-rich areas. Because researchers think deoxygenation will greatly expand the total area of ODZs over the next 100 years, studying how these areas function now is important in predicting and understanding the oceans of the future. This first expedition of 2016 led by Dr. Mak Saito from the Woods Hole Oceanographic Institution (WHOI) along with scientists from University of Maryland Center for Environmental Science, University of California Santa Cruz, and University of Washington aimed to do just that, investigate ODZs.</p>
<p>During the 28 day voyage named “ProteOMZ,” researchers aboard R/V <em>Falkor </em>traveled from Honolulu, Hawaii to Tahiti to describe the biogeochemical processes that occur within this particular swath of the ocean’s ODZs. By doing so, they contributed to our greater understanding of ODZs, gathered a database of baseline measurements to which future measurements can be compared, and established a new methodology that could be used in future research on these expanding ODZs.</p>
ProteOMZ (Proteomics in an Oxygen Minimum Zone)
largerWorkCitation
project
eng; USA
oceans
Central Pacific
-157.3022
-139.1089
-0.4708
17.4465
2016-01-19
2016-01-28
Central Pacific Ocean (Hawaii to Tahiti)
0
BCO-DMO catalogue of parameters from FASTA file of identified protein sequences from the R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific during 2016
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
24908540
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/c761cbcd-49c0-449a-8601-9dee7bcb013c/content
download
https://doi.org/10.26008/1912/bco-dmo.737611.3
download
onLine
dataset
<p>The raw mass spectra files were searched against SEQUEST within Proteome Discoverer v2.2 software. Processed files were then loaded into Proteome Software and protein and peptide reports as well as and fasta files were exported. The files were modified slightly to map to the Protein Portal data model for submission to BCO-DMO.<br />
<br />
&nbsp;</p>
Specified by the Principal Investigator(s)
originally submitted file was attached to this dataset, no modifications.
BCO-DMO Data Manager Notes:
* data version 1: 2018-05-25 replaced by data version 2: 2019-01-02 which is a new version of the .fasta file which includes more proteins not present in the previous version.
dataset version 3 (2019-02-15):
* Fasta file ProteOMZ_identified_Metzyme_ORFs.fasta attached as the current version corresponding to the Ocean Protein Portal database dataset "ProteOMZ" v3 (file version 2019-02-15).
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: FK160115
FK160115
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel
FK160115
Mak A. Saito
Woods Hole Oceanographic Institution
https://service.rvdata.us/data/cruise/FK160115/doc/FK160115_OfficialCruiseReport_Saito_v3.pdf
Report describing FK160115
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel