Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016.
<div><p>These data are part of the Ocean Protein Portal "ProteOMZ" dataset (<a href="https://proteinportal.whoi.edu/;">https://proteinportal.whoi.edu/;</a> Saito et al., 2019).</p></div>
ProteOMZ Protein Level Spectral Counts
<div><p>The raw mass spectra files were searched against SEQUEST within Proteome Discoverer v2.2 software. Processed files were then loaded into Proteome Software and protein and peptide reports as well as and fasta files were exported. The files were modified slightly to map to the Protein Portal data model for submission to BCO-DMO.</p></div>
737620
ProteOMZ Protein Level Spectral Counts
2018-05-25T13:44:15-04:00
2018-05-25T13:44:15-04:00
2024-03-21T16:24:48-04:00
urn:bcodmo:dataset:737620
-Date, time, filter min, filter max, lat, lon, and cruise columns were added based on information from the Falkor 160115 Event log and CTD log.
-Column names reformatted to comply with BCO-DMO standards.
Dataset version 3: replaces the earlier data version from date (2018-05-25)
* Values "#N/A" changed to "Unknown" which has a different meaning than blank values. Unknown = "Protein functional and taxonomic annotations are marked as "Unknown" for protein sequences which did not have any significant hits to known reference sequences or motifs in the metagenome annotation database. "
* Event log and McLane pump log were updated to fix lat/lon, date/time issues. Since these were sources of information in this dataset, this dataset is also being updated. See respective "processing notes" sections for these two logs for detailed information about changes to those data sources. event log: https://www.bco-dmo.org/dataset/708384 pump log: https://www.bco-dmo.org/dataset/708495
* ISO_DateTime_UTC timestamp added from Date and time columns in the McLane log dataset. Date and time columns were HST time zone so 10 hours were added to make the time in UTC.
* columns for max and min pump filter size added (min 0.2 max 3.0).
* some station and target depths for station and target depth combinations did not exist in the Mclane pump log so the missing values were added to the mclane pump log. The following columns in this dataset come from the pump log: cruise, cast, date, time, lat, lon, depth (ISO_DateTime_UTC is derived from local date and time). Where there were two matched casts in the pump log for a station and target depth, the first cast for the station was used. The only differences between the two possible casts were the date/time columns.
Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016.
Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 103 samples, for ~6 million data points.
false
Saito, M. A. (2018) Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 3) Version Date 2018-12-10 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/737620 [access date]
false
3
true
2019-02-24
2018-12-10
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2016-01-19 - 2016-01-28
2016-01-19
2016-01-19
---19
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2016-01-28
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