http://lod.bco-dmo.org/id/dataset/743771
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-08-20
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
GenBank accession numbers for algae species sequenced in Antartica, California, and Fiji.
2025-02-27
publication
2025-02-27
revision
BCO-DMO Linked Data URI
2025-02-27
creation
http://lod.bco-dmo.org/id/dataset/743771
Erik Sotka
Grice Marine Laboratory - College of Charleston
principalInvestigator
Courtney Murren
College of Charleston
principalInvestigator
Allan Strand
College of Charleston
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Sotka, E., Murren, C., Strand, A. (2025) GenBank accession numbers for algae species sequenced in Antartica, California, and Fiji. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1.1) Version Date 2025-02-27 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/743771 [access date]
Palatability of non-native alga Dataset Description: <p>GenBank accession numbers for the algae species sequenced.</p> Methods and Sampling: <p>These<em> </em>data are described in detail in Demko, A. M., C. D. Amsler, M. E. Hay, J. D. Long, J. B. McClintock, V. J. Paul, and E. E. Sotka. 2017. Declines in plant palatability from polar to tropical latitudes depend on herbivore and plant identity. Ecology 98:2312–2321. We quantified the relative palatability of 50 seaweeds by offering each generalist herbivore a pairwise choice between each test seaweed and a control in artificial feeding assays with finely ground lyophilized tissue. For each assay, 8 g of freeze-dried and ground powder (ground via Wiley Mill) of one experimental seaweed and the Ulva control were rehydrated with 28 mL distilled water and mixed with 72 mL molten agar (2% by mass). Seaweed mixes were then poured into side-by-side lanes in a mold on window screen (1 9 2 mm squares) in a thickness of approximately 2 mm. After cooling, the screen was then cut into strips with approximately 80 squares of each food type separated by 2 cm. Individual strips were then isolated with approximately 30 separate crabs and 50 separate urchins, and removed before the entirety of either food was consumed or until 24–30 h had elapsed. Replicates in which &lt;10% or &gt;95% of all food offered was consumed were removed before statistical analysis because of their low power to infer feeding choice. Our sample size for each seaweed–herbivore combination ranged from n = 10 to 46. Palatability of each seaweed to each herbivore was quantified as the proportion of the experimental seaweed consumed divided by the total consumption of experimental and control seaweed within a replicate (%T).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1357386 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1357386
completed
Erik Sotka
Grice Marine Laboratory - College of Charleston
843-953-9191
Grice Marine Laboratory 205 Fort Johnson Road
Charleston
SC
29412
USA
SotkaE@cofc.edu
pointOfContact
Courtney Murren
College of Charleston
843-953-8077
Dept. of Biology
Charleston
SC
29424
USA
murenc@cofc.edu
pointOfContact
Allan Strand
College of Charleston
843-953-9189
Grice Marine Laboratory, 66 George St. Room 216
Charleston
SC
29424
USA
stranda@cofc.edu
pointOfContact
asNeeded
Dataset Version: 1.1
Unknown
species
sequence_types
location
accession_number_url
accession_number_text
accession_number
theme
None, User defined
species scientific name (binomial)
sequence
site
external_link
accession number
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Detecting genetic adaptation during marine invasions
https://osprey.bco-dmo.org/project/472708
Detecting genetic adaptation during marine invasions
<p><em>Description from NSF award abstract:</em><br />
Biological introductions, defined as the establishment of species in geographic regions outside the reach of their natural dispersal mechanisms, have dramatically increased in frequency during the 20th century and are now altering community structure and ecosystem function of virtually all marine habitats. To date, studies on marine invasions focus principally on demographic and ecological processes, and the importance of evolutionary processes has been rarely tested. This knowledge gap has implications for management policies, which attempt to prevent biological introductions and mitigate their impacts. The Asian seaweed <em>Gracilaria vermiculophylla</em> has been introduced to every continental margin in the Northern Hemisphere, and preliminary data indicate that non-native populations are both more resistant to heat stress and resistant to snail herbivory. The project will integrate population genetics, field survey and common-garden laboratory experiments to comprehensively address the role of rapid evolutionary adaptation in the invasion success of this seaweed. Specifically, the PIs will answer the following. What is the consequence of introductions on seaweed demography and mating systems? How many successful introductions have occurred in North America and Europe? Where did introduced propagules originate? Do native, native-source and non-native locations differ in environmental conditions? Do native, native-source and non-native populations differ in phenotype?</p>
<p>The intellectual merit of this project is based on three gaps in the literature. First, while biological invasions are widely recognized as a major component of global change, there are surprisingly few studies that compare native and non-native populations in their biology or ecology. Native and non-native populations will be surveyed in a similar manner, allowing assessment of differences in population dynamics, mating system, epifaunal and epiphytic communities, and the surrounding abiotic and biotic environment. Second, <em>G. vermiculophylla</em> exhibits a life cycle typical of other invasive species (including some benthic invertebrates), yet we still lack data on the effects of decoupling the haploid and diploid stages on genetic structure, and in turn, on the evolvability of their populations. Finally, this project will provide unequivocal evidence of an adaptive shift in a marine invasive. To our knowledge, such evolutionary change has been described previously for only a complex of marine copepod species. <em>G. vermiculophylla</em> will serve as a model for understanding evolution in other nuisance invasions, and perhaps lead to novel methods to counter future invasions or their spread.</p>
Genetic Adaptation Marine Inv
largerWorkCitation
project
eng; USA
oceans
-123.04
-64.05
-64.77
38.32
1996-01-01
2014-12-31
Estuaries of NW and NE Pacific; estuaries of NW and NE Atlantic
0
BCO-DMO catalogue of parameters from GenBank accession numbers for algae species sequenced in Antartica, California, and Fiji.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/743808.rdf
Name: species
Units: unitless
Description: <p>Genus and species of alga</p>
http://lod.bco-dmo.org/id/dataset-parameter/743809.rdf
Name: sequence_types
Units: unitless
Description: <p>Gene name</p>
http://lod.bco-dmo.org/id/dataset-parameter/743810.rdf
Name: location
Units: unitless
Description: <p>Antarctica (64.77 deg S 64.05 deg W); California (32.72 deg N 117.16 deg W and 38.32 deg N 123.04 deg W); Fiji (18.00 deg S 179.00 deg E)</p>
http://lod.bco-dmo.org/id/dataset-parameter/954939.rdf
Name: accession_number_url
Units: unitless
Description: <p>Link to NCBI Accession Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/954940.rdf
Name: accession_number_text
Units: unitless
Description: <p>NCBI Accession Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/743811.rdf
Name: accession_number
Units: unitless
Description: <p>Accession number and link to information at NCBI</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
19153
https://datadocs.bco-dmo.org/file/WW9v1jkcxgypqD/accession_numbers.csv
accession_numbers.csv
download
https://osprey.bco-dmo.org/dataset/743771/data/download
download
onLine
dataset
<p>These<em> </em>data are described in detail in Demko, A. M., C. D. Amsler, M. E. Hay, J. D. Long, J. B. McClintock, V. J. Paul, and E. E. Sotka. 2017. Declines in plant palatability from polar to tropical latitudes depend on herbivore and plant identity. Ecology 98:2312–2321. We quantified the relative palatability of 50 seaweeds by offering each generalist herbivore a pairwise choice between each test seaweed and a control in artificial feeding assays with finely ground lyophilized tissue. For each assay, 8 g of freeze-dried and ground powder (ground via Wiley Mill) of one experimental seaweed and the Ulva control were rehydrated with 28 mL distilled water and mixed with 72 mL molten agar (2% by mass). Seaweed mixes were then poured into side-by-side lanes in a mold on window screen (1 9 2 mm squares) in a thickness of approximately 2 mm. After cooling, the screen was then cut into strips with approximately 80 squares of each food type separated by 2 cm. Individual strips were then isolated with approximately 30 separate crabs and 50 separate urchins, and removed before the entirety of either food was consumed or until 24–30 h had elapsed. Replicates in which &lt;10% or &gt;95% of all food offered was consumed were removed before statistical analysis because of their low power to infer feeding choice. Our sample size for each seaweed–herbivore combination ranged from n = 10 to 46. Palatability of each seaweed to each herbivore was quantified as the proportion of the experimental seaweed consumed divided by the total consumption of experimental and control seaweed within a replicate (%T).</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Data Processing Notes:</strong></p>
<p>-Added links to NCBI accession numbers<br />
-Reformatted column names to comply with BCO-DMO standards</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact