http://lod.bco-dmo.org/id/dataset/748064
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-10-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014
2018-10-15
publication
2018-10-15
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-05-06
publication
https://doi.org/10.26008/1912/bco-dmo.748064.1
David Caron
University of Southern California
principalInvestigator
Sarah K. Hu
University of Southern California
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Caron, D., Hu, S. (2020) Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-10-15 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.748064.1 [access date]
Dataset Description: This dataset is a raw output operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from extracted DNA and RNA. Columns represent samples, including month sampled, material (either extracted RNA or DNA), and depth (in meters); thus values in each column represent the number of sequences in that sample that belong to a given OTU (OTUs by row). Each row represents a single OTU. The last column lists the taxonomic identifier assigned to each OTU. The raw sequence data can be found in the NCBI SRA database under accession number SRP070577 with the associated BioProject PRJNA311248.
Metadata for these sequences can be found in the dataset:
”18S rRNA gene tag sequences from DNA and RNA": https://www.bco-dmo.org/dataset/745527 Methods and Sampling: <p>These data were published in Hu et al., 2016.</p>
<p>This dataset is a raw output&nbsp;operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from DNA and RNA. The numbers in each column represent the number of sequences from that sample belonging to a given OTU (row), with the last column listing the taxonomic ID assigned to each OTU.&nbsp;The raw sequence data can be found in the NCBI SRA database under accession number&nbsp;<a href="https://www.ncbi.nlm.nih.gov/sra/SRP070577"><u>SRP070577</u></a>&nbsp;with the associated&nbsp;BioProject&nbsp;<a href="https://www.ncbi.nlm.nih.gov//bioproject/PRJNA311248"><u>PRJNA311248</u></a>.&nbsp; Metadata for these sequences can be found in the dataset:<br />
”18S rRNA gene tag sequences from DNA and RNA": https://www.bco-dmo.org/dataset/745527</p>
<p>Nucleotide bases with a Q score lower than 20 for the last 30 bp of each sequence were trimmed. Paired-end sequences were merged using FLASh (Magoc and Salzberg 2011) with a minimum of 10 bp and maximum of 150 bp overlap between each sequence pair. Sequences shorter than 350 bp, longer than 460 bp, or which had an average quality score lower than 25 were discarded using QIIME v1.8 (Caporaso <em>et al</em>. 2010). Chimeric sequences were identified and removed, by either <em>de novo </em>or reference-based chimera checking (identify chimeric seqs.py in QIIME, intersection method).&nbsp;</p>
<p>The code release v2 associated with this version of the dataset can be downloaded as a .zip file from the Supplemental&nbsp;Documents section of this page. Future code updates will be accessible from the GitHub repository&nbsp;<a href="https://github.com/shu251/V4_tagsequencing_18Sdiversity_q1">https://github.com/shu251/V4_tagsequencing_18Sdiversity_q1</a>.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1737409 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1737409
completed
David Caron
University of Southern California
213-740-0203
Dornsife College of Letters, Arts, and Sciences 3616 Trousdale Parkway
Los Angeles
CA
90089
USA
dcaron@usc.edu
pointOfContact
Sarah K. Hu
University of Southern California
skhu@tamu.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
OTU_ID
April_150m_DNA
July_DCM_DNA
April_890m_DNA
Oct_DCM_DNA
Oct_150m_DNA
July_150m_DNA
April_150m_cDNA
July_150m_cDNA
Jan_DCM_DNA
Jan_150m_DNA
April_CAT_DNA
April_5m_DNA
July_POLA_DNA
July_CAT_DNA
July_5m_DNA
April_5m_cDNA
July_CAT_cDNA
July_5m_cDNA
Oct_CAT_DNA
April_CAT_cDNA
Oct_POLA_DNA
Oct_5m_DNA
Oct_CAT_cDNA
Oct_5m_cDNA
Jan_CAT_DNA
Jan_5m_DNA
Jan_POLA_DNA
Jan_5m_cDNA
April_DCM_DNA
Jan_CAT_cDNA
July_DCM_cDNA
April_DCM_cDNA
Oct_150m_cDNA
Jan_DCM_cDNA
Jan_150m_cDNA
April_POLA_cDNA
July_POLA_cDNA
April_POLA_DNA
Oct_POLA_cDNA
Jan_POLA_cDNA
July_890m_DNA
July_890m_cDNA
Oct_DCM_cDNA
Jan_890m_DNA
Jan_890m_cDNA
Oct_890m_DNA
Oct_890m_cDNA
April_890m_cDNA
taxonomy
Illumina MiSeq
theme
None, User defined
taxon_code
sequence
taxon
featureType
BCO-DMO Standard Parameters
Automated DNA Sequencer
CTD Sea-Bird SBE 911plus
Niskin bottle
instrument
BCO-DMO Standard Instruments
SPOT_Yellowfin_Cruises
service
Deployment Activity
San Pedro Ocean Time Series
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series
https://osprey.bco-dmo.org/project/743049
Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series
<p>Planktonic marine microbial communities consist of a diverse collection of bacteria, archaea, viruses, protists (phytoplankton and protozoa) and small animals (metazoan). Collectively, these species are responsible for virtually all marine pelagic primary production where they form the basis of food webs and carry out a large fraction of respiratory processes. Microbial interactions include the traditional role of predation, but recent research recognizes the importance of parasitism, symbiosis and viral infection. Characterizing the response of pelagic microbial communities and processes to environmental influences is fundamental to understanding and modeling carbon flow and energy utilization in the ocean, but very few studies have attempted to study all of these assemblages in the same study. This project is comprised of long-term (monthly) and short-term (daily) sampling at the San Pedro Ocean Time-series (SPOT) site. Analysis of the resulting datasets investigates co-occurrence patterns of microbial taxa (e.g. protist-virus and protist-prokaryote interactions, both positive and negative) indicating which species consistently co-occur and potentially interact, followed by examination gene expression to help define the underlying mechanisms. This study augments 20 years of baseline studies of microbial abundance, diversity, rates at the site, and will enable detection of low-frequency changes in composition and potential ecological interactions among microbes, and their responses to changing environmental forcing factors. These responses have important consequences for higher trophic levels and ocean-atmosphere feedbacks. The broader impacts of this project include training graduate and undergraduate students, providing local high school student with summer lab experiences, and PI presentations at local K-12 schools, museums, aquaria and informal learning centers in the region. Additionally, the PIs advise at the local, county and state level regarding coastal marine water quality.</p>
<p>This research project is unique in that it is a holistic study (including all microbes from viruses to small metazoa) of microbial species diversity and ecological activities, carried out at the SPOT site off the coast of southern California. In studying all microbes simultaneously, this work aims to identify important ecological interactions among microbial species, and identify the basis(es) for those interactions. This research involves (1) extensive analyses of prokaryote (archaean and bacterial) and eukaryote (protistan and micro-metazoan) diversity via the sequencing of marker genes, (2) studies of whole-community gene expression by eukaryotes and prokaryotes in order to identify key functional characteristics of microorganismal groups and the detection of active viral infections, and (3) metagenomic analysis of viruses and bacteria to aid interpretation of transcriptomic analyses using genome-encoded information. The project includes exploratory metatranscriptomic analysis of poorly-understood aphotic and hypoxic-zone protists, to examine their stratification, functions and hypothesized prokaryotic symbioses.</p>
SPOT
largerWorkCitation
project
eng; USA
oceans
San Pedro Ocean Time Series
-118.475167
-118.259167
33.452833
33.7125
2013-04-24
2014-01-15
San Pedro Channel off the coast of Los Angeles
0
BCO-DMO catalogue of parameters from Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/805404.rdf
Name: OTU_ID
Units: unitless
Description: <p>Taxonomic designations called Operational Taxonomic Units</p>
http://lod.bco-dmo.org/id/dataset-parameter/805405.rdf
Name: April_150m_DNA
Units: unitless
Description: <p>DNA sequences from April at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805406.rdf
Name: July_DCM_DNA
Units: unitless
Description: <p>DNA sequences from July at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805407.rdf
Name: April_890m_DNA
Units: unitless
Description: <p>DNA sequences from April at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805408.rdf
Name: Oct_DCM_DNA
Units: unitless
Description: <p>DNA sequences from Oct at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805409.rdf
Name: Oct_150m_DNA
Units: unitless
Description: <p>DNA sequences from Oct at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805410.rdf
Name: July_150m_DNA
Units: unitless
Description: <p>DNA sequences from July at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805411.rdf
Name: April_150m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805412.rdf
Name: July_150m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805413.rdf
Name: Jan_DCM_DNA
Units: unitless
Description: <p>DNA sequences from Jan at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805414.rdf
Name: Jan_150m_DNA
Units: unitless
Description: <p>DNA sequences from Jan at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805415.rdf
Name: April_CAT_DNA
Units: unitless
Description: <p>DNA sequences from April at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805416.rdf
Name: April_5m_DNA
Units: unitless
Description: <p>DNA sequences from April at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805417.rdf
Name: July_POLA_DNA
Units: unitless
Description: <p>DNA sequences from July at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805418.rdf
Name: July_CAT_DNA
Units: unitless
Description: <p>DNA sequences from July at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805419.rdf
Name: July_5m_DNA
Units: unitless
Description: <p>DNA sequences from July at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805420.rdf
Name: April_5m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805421.rdf
Name: July_CAT_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805422.rdf
Name: July_5m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805423.rdf
Name: Oct_CAT_DNA
Units: unitless
Description: <p>DNA sequences from Oct at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805424.rdf
Name: April_CAT_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805425.rdf
Name: Oct_POLA_DNA
Units: unitless
Description: <p>DNA sequences from Oct at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805426.rdf
Name: Oct_5m_DNA
Units: unitless
Description: <p>DNA sequences from Oct at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805427.rdf
Name: Oct_CAT_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805428.rdf
Name: Oct_5m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805429.rdf
Name: Jan_CAT_DNA
Units: unitless
Description: <p>DNA sequences from Jan at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805430.rdf
Name: Jan_5m_DNA
Units: unitless
Description: <p>DNA sequences from Jan at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805431.rdf
Name: Jan_POLA_DNA
Units: unitless
Description: <p>DNA sequences from Jan at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805432.rdf
Name: Jan_5m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at 5m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805433.rdf
Name: April_DCM_DNA
Units: unitless
Description: <p>DNA sequences from April at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805434.rdf
Name: Jan_CAT_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at the surface at Catalina Island</p>
http://lod.bco-dmo.org/id/dataset-parameter/805435.rdf
Name: July_DCM_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805436.rdf
Name: April_DCM_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805437.rdf
Name: Oct_150m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805438.rdf
Name: Jan_DCM_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805439.rdf
Name: Jan_150m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at 150m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805440.rdf
Name: April_POLA_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805441.rdf
Name: July_POLA_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805442.rdf
Name: April_POLA_DNA
Units: unitless
Description: <p>DNA sequences from April at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805443.rdf
Name: Oct_POLA_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805444.rdf
Name: Jan_POLA_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at the surface at the Port of Los Angeles</p>
http://lod.bco-dmo.org/id/dataset-parameter/805445.rdf
Name: July_890m_DNA
Units: unitless
Description: <p>DNA sequences from July at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805446.rdf
Name: July_890m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from July at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805447.rdf
Name: Oct_DCM_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at the DCM at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805448.rdf
Name: Jan_890m_DNA
Units: unitless
Description: <p>DNA sequences from Jan at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805449.rdf
Name: Jan_890m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Jan at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805450.rdf
Name: Oct_890m_DNA
Units: unitless
Description: <p>DNA sequences from Oct at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805451.rdf
Name: Oct_890m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from Oct at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805452.rdf
Name: April_890m_cDNA
Units: unitless
Description: <p>RNA(cDNA) sequences from April at 890m depth at SPOT</p>
http://lod.bco-dmo.org/id/dataset-parameter/805453.rdf
Name: taxonomy
Units: unitless
Description: <p>Full taxonomic description from SILVA v111 database</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3227943
https://darchive.mblwhoilibrary.org/bitstream/1912/25752/1/dataset-748064_otu-table-18s-rrna-gene-tag-sequences-dna-and-rna__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.748064.1
download
onLine
dataset
<p>These data were published in Hu et al., 2016.</p>
<p>This dataset is a raw output&nbsp;operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from DNA and RNA. The numbers in each column represent the number of sequences from that sample belonging to a given OTU (row), with the last column listing the taxonomic ID assigned to each OTU.&nbsp;The raw sequence data can be found in the NCBI SRA database under accession number&nbsp;<a href="https://www.ncbi.nlm.nih.gov/sra/SRP070577"><u>SRP070577</u></a>&nbsp;with the associated&nbsp;BioProject&nbsp;<a href="https://www.ncbi.nlm.nih.gov//bioproject/PRJNA311248"><u>PRJNA311248</u></a>.&nbsp; Metadata for these sequences can be found in the dataset:<br />
”18S rRNA gene tag sequences from DNA and RNA": https://www.bco-dmo.org/dataset/745527</p>
<p>Nucleotide bases with a Q score lower than 20 for the last 30 bp of each sequence were trimmed. Paired-end sequences were merged using FLASh (Magoc and Salzberg 2011) with a minimum of 10 bp and maximum of 150 bp overlap between each sequence pair. Sequences shorter than 350 bp, longer than 460 bp, or which had an average quality score lower than 25 were discarded using QIIME v1.8 (Caporaso <em>et al</em>. 2010). Chimeric sequences were identified and removed, by either <em>de novo </em>or reference-based chimera checking (identify chimeric seqs.py in QIIME, intersection method).&nbsp;</p>
<p>The code release v2 associated with this version of the dataset can be downloaded as a .zip file from the Supplemental&nbsp;Documents section of this page. Future code updates will be accessible from the GitHub repository&nbsp;<a href="https://github.com/shu251/V4_tagsequencing_18Sdiversity_q1">https://github.com/shu251/V4_tagsequencing_18Sdiversity_q1</a>.</p>
Specified by the Principal Investigator(s)
BCO-DMO Data Manager Processing Notes:
* data extracted from xlsx sheet to csv
* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions
* blank values in this dataset are displayed as "nd" for "no data." nd is the default missing data identifier in the BCO-DMO system.
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Illumina MiSeq
Illumina MiSeq
PI Supplied Instrument Name: Illumina MiSeq Instrument Name: Automated DNA Sequencer Instrument Short Name:Automated Sequencer Instrument Description: A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences.
PI Supplied Instrument Name: Instrument Name: CTD Sea-Bird SBE 911plus Instrument Short Name:CTD SBE 911plus Instrument Description: The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/
PI Supplied Instrument Name: Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Cruise: SPOT_Yellowfin_Cruises
SPOT_Yellowfin_Cruises
R/V Yellowfin
R/V Yellowfin
vessel
R/V Yellowfin
R/V Yellowfin
vessel