http://lod.bco-dmo.org/id/dataset/750996
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-12-06
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Carbonate chemistry data describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08
2018-12-07
publication
2018-12-07
revision
BCO-DMO Linked Data URI
2018-12-07
creation
http://lod.bco-dmo.org/id/dataset/750996
Jessica Bergman
California State University Northridge
principalInvestigator
Peter J. Edmunds
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bergman, J., Edmunds, P. J. (2018) Carbonate chemistry data describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-12-07 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/750996 [access date]
Carbonate chemistry data describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08 Dataset Description: <p>Twelve colonies of Pocillopora damicornis (Linnaeus 1758) were collected in July and August 2016 from ~ 1-m depth on a patch reef on the northwest shore of Okinawa (26°40’18.24” N, 127°53’4.78” E). Colonies were collected prior to expected larval release in Okinawa in July and August (S. Harii, unpublished data on the study site), with peak release occurring ~ 7 days after the new moon.<br />
<br />
Following collection, colonies were transferred to Sesoko Station, part of the Tropical Biosphere Research Center University of the Ryukyus, where they were incubated outdoors in individual containers exposed to natural irradiance in flow-through seawater. Ambient seawater was pumped at 3.0 L min-1 (AC Flowmeter, Tokyo Keiso Co., Japan) from 4–5 m depth and stored in two 10 L reservoirs. Air was bubbled constantly in to the reservoirs at 3.0 L min-1 to maintain ambient seawater pCO2 (i.e., the control conditions). Seawater temperature was measured hourly at 1–2-m depth near the collection site prior to, and during, the experiment (HOBO Pro v2, Onset Computer Corporation, USA), and was 29.9 ± 0.2°C (mean ± SE, n = 45 days), with a daily minimum of 28.3°C and daily maximum of 31.8°C (R. Prasetia &amp; S. Harii, unpublished data) that reflects summertime diurnal warming in this location. Temperature in the containers holding the corals was maintained within this range during the experiment (29.8 ± &lt; 0.2°C, mean ± SE, n = 31) using a chiller (ZR-130E, Zensui, Japan).<br />
<br />
Planulae released from P. damicornis during the first quarter moon of July and August were collected at ~ 05:00 hrs following their release at ~ 03:00 hrs, using containers lined with 110 µm plankton mesh. As larvae from P. damicornis are physiologically dissimilar among days of release, larvae were collected from the inferred day of peak release and pooled among colonies releasing larvae on this day. Larvae from July and August were used to test the effects of pCO2 (two levels) and depths (two levels) on larval behavior, and the experiment was conducted in two parts. The first part (July 2016) tested the effects of two pCO2 regimes on larval behavior with the tubes positioned with their upper opening adjacent to the air-water interface of the seawater (hereafter “shallow” tubes), and the second part (August 2016) tested the effects of the same two pCO2 regimes on larval behavior with the tubes positioned with their upper opening ~3–4 m below the surface (hereafter “deep” tubes).</p> Methods and Sampling: <p>High pCO2 seawater was prepared in a single 10 L plastic reservoir by bubbling air or pure CO2 gas into seawater using a mass-flow controller (HORIBASTEC, SEC-E40, Japan) that supplied gas at 16 mL min-1. Adjustments of ± 0.1 mL min-1 in the flow rate of CO2 gas were made manually as necessary each morning leading up to the experiment to maintain the desired pCO2, as evaluated from daily measurements of seawater pH and total alkalinity (AT) used to calculate seawater pCO2 using CO2SYS software. Seawater pH and temperature in the reservoir were measured daily between 09:00 hrs and 11:00 hrs using a handheld meter (Multi 3410, WTW, Germany) fitted with a combination probe that recorded pH (± 0.001 pH unit) and temperature (± 0.1°C) (SenTix 940, WTW, Germany). The probe was calibrated daily prior to use with three NBS buffers (Nacalai Tesque, Japan). The salinity of the seawater used to fill the larval incubation tubes was measured using a conductivity meter (TetraCon 325, WTW, Germany), and AT was determined using open-cell titrations conducted with an autoburette titrator (Kimoto, ATT-05, Japan). Titrations of certified reference materials (batch 155) provided by A.G. Dickson (Scripps Institute of Oceanography) yielded AT values that differed on average ≤ 1.3 µmol kg-1 from the certified value (SE = 9.2 µmol kg-1, n = 6). Seawater pCO2, HCO3-, CO32-, and Ωarag were calculated from pH, temperature, AT, and salinity using CO2SYS with dissociation constants K1 and K2 from Mehrbach et al. (1973).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1415268 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1415268
completed
Jessica Bergman
California State University Northridge
+61 0413 423 371
1490 Barton Drive
Sunnyvale
CA
94087
United States
jesseLbergman@gmail.com
pointOfContact
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Depth
Treatment
Sample_Time
pCO2
handheld meter
autoburette titrator
theme
None, User defined
depth
treatment
sample time
Partial pressure of CO2
featureType
BCO-DMO Standard Parameters
Multi Parameter Portable Meter
Titrator
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
http://mcr.lternet.edu
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
<p><em>Extracted from the NSF award abstract:</em></p>
<p>This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States. </p>
<p>This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build.</p>
<p><strong>The following publications and data resulted from this project:</strong></p>
<p>Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI <a href="http://doi.org/10.1007/s00338-016-1425-0" target="_blank">10.1007/s00338-016-1425-0</a>.<br />
<a href="https://www.bco-dmo.org/dataset/683723" target="_blank">calcification rates</a> (2014)<br />
<a href="https://www.bco-dmo.org/dataset/648442" target="_blank">calcification rates </a>(2010)</p>
<p>Comeau, S., Carpenter, R.C., Edmunds, P.J. (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:<a href="http://doi.org/10.1093/icesjms/fsv267" target="_blank">10.1093/icesjms/fsv267</a>.<br />
<a href="http://www.bco-dmo.org/dataset/645277">respiration and photosynthesis I</a><br />
<a href="http://www.bco-dmo.org/dataset/648416">respiration and photosynthesis II</a></p>
<p>Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: <a href="http://doi.org/10.1007/s00227-016-2921-z" target="_blank">10.1007/s00227-016-2921-z</a><br />
<a href="https://www.bco-dmo.org/dataset/683932" target="_blank">coral growth</a><br />
<a href="https://www.bco-dmo.org/dataset/684541" target="_blank">seawater chemistry</a><br />
<a href="https://www.bco-dmo.org/dataset/684528">coral colony interactions</a></p>
OA coral adaptation
largerWorkCitation
project
eng; USA
oceans
127.8847
127.8847
26.6717
26.6717
2016-07-01
2016-08-31
Moorea, French Polynesia
0
BCO-DMO catalogue of parameters from Carbonate chemistry data describing the behavior of coral larvae in high pCO2 within shallow tropical reefs in Okinawa, Japan from 2016-07 to 2016-08
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/751001.rdf
Name: Depth
Units: meters (m)
Description: <p>Depth at which larvae were incubated</p>
http://lod.bco-dmo.org/id/dataset-parameter/751002.rdf
Name: Treatment
Units: unitless
Description: <p>Ambient (400 uatm) or high (1000 uatm) pCO2 conditions</p>
http://lod.bco-dmo.org/id/dataset-parameter/751003.rdf
Name: Sample_Time
Units: unitless
Description: <p>Beginning or end of 24-hour incubation</p>
http://lod.bco-dmo.org/id/dataset-parameter/751004.rdf
Name: pCO2
Units: microatmosphere (uatm)
Description: <p>calculated pCO2</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
536
https://datadocs.bco-dmo.org/file/yppzBmoh0k9lQo/carb_chem2.csv
carb_chem2.csv
Primary data file for dataset ID 750996
download
https://osprey.bco-dmo.org/dataset/750996/data/download
download
onLine
dataset
<p>High pCO2 seawater was prepared in a single 10 L plastic reservoir by bubbling air or pure CO2 gas into seawater using a mass-flow controller (HORIBASTEC, SEC-E40, Japan) that supplied gas at 16 mL min-1. Adjustments of ± 0.1 mL min-1 in the flow rate of CO2 gas were made manually as necessary each morning leading up to the experiment to maintain the desired pCO2, as evaluated from daily measurements of seawater pH and total alkalinity (AT) used to calculate seawater pCO2 using CO2SYS software. Seawater pH and temperature in the reservoir were measured daily between 09:00 hrs and 11:00 hrs using a handheld meter (Multi 3410, WTW, Germany) fitted with a combination probe that recorded pH (± 0.001 pH unit) and temperature (± 0.1°C) (SenTix 940, WTW, Germany). The probe was calibrated daily prior to use with three NBS buffers (Nacalai Tesque, Japan). The salinity of the seawater used to fill the larval incubation tubes was measured using a conductivity meter (TetraCon 325, WTW, Germany), and AT was determined using open-cell titrations conducted with an autoburette titrator (Kimoto, ATT-05, Japan). Titrations of certified reference materials (batch 155) provided by A.G. Dickson (Scripps Institute of Oceanography) yielded AT values that differed on average ≤ 1.3 µmol kg-1 from the certified value (SE = 9.2 µmol kg-1, n = 6). Seawater pCO2, HCO3-, CO32-, and Ωarag were calculated from pH, temperature, AT, and salinity using CO2SYS with dissociation constants K1 and K2 from Mehrbach et al. (1973).</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing Notes:</p>
<ul>
<li>translated Excel spreadsheet to a comma separated file</li>
<li>added conventional header with dataset name, PI name, version date</li>
<li>modified parameter names to conform with BCO-DMO naming conventions</li>
</ul>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
handheld meter
handheld meter
PI Supplied Instrument Name: handheld meter PI Supplied Instrument Description:Seawater pH and temperature in the reservoir were measured daily between 09:00 hrs and 11:00 hrs using a handheld meter (Multi 3410, WTW, Germany) fitted with a combination probe that recorded pH (± 0.001 pH unit) and temperature (± 0.1°C) (SenTix 940, WTW, Germany). Instrument Name: Multi Parameter Portable Meter Instrument Short Name: Instrument Description: An analytical instrument that can measure multiple parameters, such as pH, EC, TDS, DO and temperature with one device and is portable or hand-held.
autoburette titrator
autoburette titrator
PI Supplied Instrument Name: autoburette titrator PI Supplied Instrument Description:The salinity of the seawater used to fill the larval incubation tubes was measured using a conductivity meter (TetraCon 325, WTW, Germany), and AT was determined using open-cell titrations conducted with an autoburette titrator (Kimoto, ATT-05, Japan). Instrument Name: Titrator Instrument Short Name:Titrator Instrument Description: Titrators are instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/