<div><p>Project accession number<br />
PIXQ01000000</p>
<p>Species name<br />
Alicanivorax sp. 97CO-6 </p>
<p>Description of types of sequences:<br />
The draft genome of strain 97CO-6, which contains 3,253,423 bp, with a G+C content of 54.53%, as well as 2,931 protein-coding genes and 42 tRNAs.</p>
<p>Locations where species were collected<br />
Alcanivorax sp. Strain 97CO-6 was isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China </p>
<p>Sequencing and analysis methods<br />
Whole-genome shotgun sequencing of the Alcanivorax sp. 97CO-6 genome was done using Solexa paired-end sequencing technology by Shanghai Majorbio Bio-Pharm Technology Co., Ltd (Shanghai, China). A total of 13,445,638 paired-end reads (180-bp and 800-bp libraries) were generated to reach a 398-fold depth of coverage using the Illumina HiSeq 2000 platform (Illumina, Inc., San Diego, CA, USA). The reads were assembled using SOAPdenovo version 1.05. The resulting genome sequence of Alcanivorax sp. 97CO-6 comprises 43 contigs (N90 = 78,739), with 3,253,423 bp and an average G+C content of 54.53%. Gene annotation was carried out using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) (<a href="https://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html">https://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html</a>), which was followed by manual editing. The annotation of the genome includes 2,931 candidate protein-encoding genes (with an average size of 960 bp), yielding a coding intensity of 86.50%. A total of 2,118 proteins could be assigned to clusters of orthologous (COG) groups; 42 tRNAs for all 20 amino acids and one 16S-23S-5S rRNA operon were identified using tRNAscan version 1.23 (8) and rRNAmmer version 1.2 (9), respectively.</p>
<p>All of the above information is from the published article “Genome Sequence of a Marine Alkane Degrader, Alcanivorax sp. Strain 97CO-6.” Xiafei Yin, Xiao Luan, Angela Xu, Qian Li, Zhisong Cui, and David L. Valentine, Genome Announcements 2018 6 (8): e00087-18 doi: 10.1128/genomeA.00087-18</p></div>
<div><p>Whole-genome sequence accessions for the Alcanivorax sp. strain 97CO-6 isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China in April of 2007. </p>
<p>The genetic accessions can be found at The National Center for Biotechnology Information (NCBI) under master accession number PIXQ01000000 (<a href="https://www.ncbi.nlm.nih.gov/nuccore/PIXQ01000000">https://www.ncbi.nlm.nih.gov/nuccore/PIXQ01000000</a>). </p>
<p>These results were published in Yin et al. (2018).</p></div>
Alcanivorax sp. 97CO-6
771936
Alcanivorax sp. 97CO-6
2019-06-26T18:19:33-04:00
2019-06-26T18:19:33-04:00
2019-07-02T10:27:33-04:00
urn:bcodmo:dataset:771936
Whole-genome sequence accessions for the Alcanivorax sp. strain 97CO-6 isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China in April of 2007.
Whole-genome sequence accessions for the Alcanivorax sp. strain 97CO-6 isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China in April of 2007.
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Valentine, D. L. (2019) Whole-genome sequence accessions for the Alcanivorax sp. strain 97CO-6 isolated from a crude oil-consuming bacterial consortium, enriched from Yellow Sea sediments from China in April of 2007. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-06-26 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/771936 [access date]
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