http://lod.bco-dmo.org/id/dataset/775428
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2019-08-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia.
2019-08-15
publication
2019-08-15
revision
BCO-DMO Linked Data URI
2019-08-15
creation
http://lod.bco-dmo.org/id/dataset/775428
Karin Limburg
State University of New York College of Environmental Science and Forestry
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Limburg, K. (2019) Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-08-15 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/775428 [access date]
Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia. Dataset Description: <p>Young-of-the-year (YOY) flounder were collected by beach seines in&nbsp;Latvian and Swedish territorial waters of the Baltic Sea..&nbsp; Fish were stored frozen until they were processed. &nbsp;This dataset is comprised of&nbsp;transect data for young-of-the-year Baltic Sea flounder, Platichthys flesus and P. solemdali. &nbsp;The corresponding collection data (date of capture, Fish-ID, length, etc.) is found in the&nbsp;Flounder YOY collections (https://www.bco-dmo.org/dataset/775412). &nbsp;</p>
<p>Each row is a replicate analysis of the analytes. &nbsp;Each analyte is in its own column. &nbsp;The transects run from the otolith core (denoted as zero) to the outer edge. &nbsp;For example, the transect for the first fish, Otolith_ID = KolkaEarly4-25, has 49 sequential data points collected at distances from the core noted in the Distance column.&nbsp;</p> Methods and Sampling: <p>Young-of-the-year (YOY) flounder were collected by beach seines at Baltic Sea sites in Sweden and Latvia. &nbsp;Fish were stored frozen until they were processed. &nbsp;Processing consisted of measuring total lengths and extracting their sagittal otoliths. &nbsp;The otoliths were cleaned, dried, mounted on glass slides, and then polished to expose the core. &nbsp;Chemical analyses were conducted by laser ablation-inductively coupled plasma mass spectrometry (LA-ICPMS) at the SUNY College of Environmental Science and Forestry. &nbsp;A USGS carbonate standard (MACS-3) was used to calibrate and correct for instrument drift. &nbsp;Spot size was 35 microns, and transects were run from core to outer edge at 5 microns/second.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1433759 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1433759
onGoing
Karin Limburg
State University of New York College of Environmental Science and Forestry
315-470-6741
249 Illick Hall 1 Forestry Dr.
Syracuse
NY
13210
United States
klimburg@esf.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
otolith_id
country
date_of_analysis
time
distance_from_core
ca_43
mn_55
i_127
ba_138
sr_88
mg_24
mg_26
pb_208
zn_64
cu_63
cu_65
PerkinElmer DRC-e quadrupole ICP mass spectrometer
theme
None, User defined
sample identification
region
date
time of day
length
Calcium
Manganese
No BCO-DMO term
Barium
Strontium
Magnesium
Lead
Zinc
Copper
featureType
BCO-DMO Standard Parameters
Mass Spectrometer
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Consequences of sub-lethal hypoxia exposure for teleosts tracked with biogeochemical markers: a trans-basin comparison
https://osprey.bco-dmo.org/project/516275
Collaborative Research: Consequences of sub-lethal hypoxia exposure for teleosts tracked with biogeochemical markers: a trans-basin comparison
<p><em>Description from NSF award abstract:</em><br />
Hypoxia occurs when dissolved oxygen concentrations in aquatic habitats drop below levels required by living organisms. The increased frequency, duration and intensity of hypoxia events worldwide have led to impaired health and functioning of marine and freshwater ecosystems. Although the potential impacts of hypoxic exposure are severe, there is little known about the consequences of systemic, sub-lethal exposure to hypoxic events for populations and communities of fishes. The objective of this project is to determine whether sub-lethal exposure to hypoxia during early life stages leads to poor growth and hence increased mortality. This project will use "environmental fingerprint" methods in fish ear stones (otoliths) retrospectively to identify periods of hypoxia exposure. The project will compare consequences of hypoxia exposure in different fish species from the Gulf of Mexico, the Baltic Sea, and Lake Erie, thus examining the largest anthropogenic hypoxic regions in the world spanning freshwater, estuarine, and marine ecosystems.</p>
<p>This project will employ long-term, permanent markers incorporated into fish otoliths to identify life-long patterns of sub-lethal hypoxia exposure far beyond time spans currently achievable using molecular markers. This work will capitalize on patterns of geochemical proxies such as Mn/Ca and I/Ca incorporated into otoliths and analyzed using laser ablation inductively coupled plasma mass spectrometry to identify patterns of sub-lethal hypoxia exposure. The investigators will then determine whether exposure results in differential growth and survival patterns compared to non-exposed fish by tracking cohorts over time and identifying characteristics of survivors. Because this work involves multiple species in multiple hypoxic regions, it will allow cross-system comparisons among unique ecosystems. The results from this project will thus provide unprecedented insight into effects of hypoxia exposure in three major basins using novel biogeochemical proxies, thereby paving the way for a fuller understanding of the impacts of "dead zones" on coastal resources.</p>
OtolithHypoxia
largerWorkCitation
project
eng; USA
oceans
2016-02-04
2017-06-02
Northern Gulf of Mexico, Baltic Sea, and Lake Erie
0
BCO-DMO catalogue of parameters from Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/775435.rdf
Name: otolith_id
Units: unitless
Description: <p>This ID links to the collection data for an individual fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/775436.rdf
Name: country
Units: unitless
Description: <p>This is the country in whose territorial waters the fish were collected.</p>
http://lod.bco-dmo.org/id/dataset-parameter/775437.rdf
Name: date_of_analysis
Units: unitless
Description: <p>The date of the otolith chemistry analysis</p>
http://lod.bco-dmo.org/id/dataset-parameter/775438.rdf
Name: time
Units: unitless
Description: <p>Time of each analysis</p>
http://lod.bco-dmo.org/id/dataset-parameter/775439.rdf
Name: distance_from_core
Units: micrometers (um)
Description: <p>The distance in microns of the analysis away from the otolith core. Core is indicated by Distance = 0.</p>
http://lod.bco-dmo.org/id/dataset-parameter/775440.rdf
Name: ca_43
Units: parts per million(ppm)
Description: <p>Calcium</p>
http://lod.bco-dmo.org/id/dataset-parameter/775441.rdf
Name: mn_55
Units: perts per million (ppm)
Description: <p>Manganese</p>
http://lod.bco-dmo.org/id/dataset-parameter/775442.rdf
Name: i_127
Units: parts per million (ppm)
Description: <p>Iodine</p>
http://lod.bco-dmo.org/id/dataset-parameter/775443.rdf
Name: ba_138
Units: parts per million (ppm)
Description: <p>Barium</p>
http://lod.bco-dmo.org/id/dataset-parameter/775444.rdf
Name: sr_88
Units: parts per million (ppm)
Description: <p>Strontium</p>
http://lod.bco-dmo.org/id/dataset-parameter/775445.rdf
Name: mg_24
Units: parts per million (ppm)
Description: <p>Magnesium</p>
http://lod.bco-dmo.org/id/dataset-parameter/775446.rdf
Name: mg_26
Units: parts per million (ppm)
Description: <p>Magnesium-26 isotope. Likely unusable due to polyatomic interferences</p>
http://lod.bco-dmo.org/id/dataset-parameter/775447.rdf
Name: pb_208
Units: parts per million (ppm)
Description: <p>Lead</p>
http://lod.bco-dmo.org/id/dataset-parameter/775448.rdf
Name: zn_64
Units: parts per million (ppm)
Description: <p>Zinc</p>
http://lod.bco-dmo.org/id/dataset-parameter/775449.rdf
Name: cu_63
Units: parts per million (ppm)
Description: <p>Copper-63</p>
http://lod.bco-dmo.org/id/dataset-parameter/775450.rdf
Name: cu_65
Units: parts per million (ppm)
Description: <p>Copper-65</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/775428/data/download
download
onLine
dataset
<p>Young-of-the-year (YOY) flounder were collected by beach seines at Baltic Sea sites in Sweden and Latvia. &nbsp;Fish were stored frozen until they were processed. &nbsp;Processing consisted of measuring total lengths and extracting their sagittal otoliths. &nbsp;The otoliths were cleaned, dried, mounted on glass slides, and then polished to expose the core. &nbsp;Chemical analyses were conducted by laser ablation-inductively coupled plasma mass spectrometry (LA-ICPMS) at the SUNY College of Environmental Science and Forestry. &nbsp;A USGS carbonate standard (MACS-3) was used to calibrate and correct for instrument drift. &nbsp;Spot size was 35 microns, and transects were run from core to outer edge at 5 microns/second.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing Notes:<br />
- reformatted dates into yyyy-mm-dd format<br />
- removed empty rows<br />
-&nbsp;added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PerkinElmer DRC-e quadrupole ICP mass spectrometer
PerkinElmer DRC-e quadrupole ICP mass spectrometer
PI Supplied Instrument Name: PerkinElmer DRC-e quadrupole ICP mass spectrometer PI Supplied Instrument Description:New Wave (ESI) 193-nm Solid State Laser Ablation Unit coupled to a PerkinElmer DRC-e quadrupole ICP mass spectrometer. Instrument Name: Mass Spectrometer Instrument Short Name:Mass Spec Instrument Description: General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/