http://lod.bco-dmo.org/id/dataset/781671
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2019-11-14
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Dive log from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018
2019-11-06
publication
2019-11-06
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-10-28
publication
https://doi.org/10.26008/1912/bco-dmo.781671.1
Malin Pinsky
Rutgers University
principalInvestigator
Michelle Stuart
Rutgers University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Pinsky, M., Stuart, M. (2020) Dive log from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-11-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.781671.1 [access date]
dive log Dataset Description: <p>Dive&nbsp;log from the west coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87528), 2012-2018.&nbsp;</p> Methods and Sampling: <p>Anemone surveyor:<br />
-&nbsp;searches adjacent area for anemone tag (anemone could have moved a few feet since last encounter)<br />
- records time, species, size of anemone, tag number if present<br />
- watches anemone and counts number of fish and estimate sizes (same procedure regardless of species)<br />
- records species of fish, estimate sizes<br />
- adds tag after the fact if one was missing or if there was only one zip tie tag (old system tag)<br />
- flags anemone with flagging tape that it is ready to be hunted if APCL were present.</p>
<p>Fish catcher:<br />
-&nbsp;waits for flagging tape to indicate anemone is ready for fish capture, ok to chase fish if they fled the area<br />
- catches all fish of desired size range and places in holding vessel adjacent to anemone<br />
- can move on to next anemone if anemone surveyor has flagged it</p>
<p>For dive-type codes, see:&nbsp;<a href="https://www.bco-dmo.org/dataset/785633">https://www.bco-dmo.org/dataset/785633</a></p>
<p>Data entry was made with Excel or Google sheets, depending on the internet connection.<br />
Data cleaning was performed in R using the tidyverse package.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1430218 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1430218
completed
Malin Pinsky
Rutgers University
848-932-8242
14 College Farm Rd.
New Brunswick
NJ
08901
USA
malin.pinsky@rutgers.edu
pointOfContact
Michelle Stuart
Rutgers University
(848) 932-5515
ENR 168 14 College Farm Rd
New Brunswick
NJ
08901
USA
michelle.stuart@rutgers.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
dive_table_id
dive_num
dive_type
date
site
municipality
gps
divers
start_time
end_time
duration
discontinuous
pause_start
pause_end
weather
current_knots
wave_height_cm
visibility_m
wind_mph
tide
topo_m
depth_top_m
depth_bottom_m
cover
dive_notes
dive_correction
dive_corr_date
dive_corr_editor
dive_corr_message
Biomark 601 PIT tag reader
theme
None, User defined
dive_id
experiment type
date_local
site
GPS_id
person name
time_start_local
time_end_local
duration
comments
weather
curr_speed_rel
wave_height
visibility
wind_speed
depth
featureType
BCO-DMO Standard Parameters
tracking tag
instrument
BCO-DMO Standard Instruments
SCUBA_Pinsky_Leyte
service
Deployment Activity
West coast of Leyte, Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (10.676940, 124.799170)
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
https://osprey.bco-dmo.org/project/554706
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
<p><em>Description from NSF award abstract:</em><br />
When Typhoon Haiyan hit the Philippines it had sustained winds of 305 to 315 kph and was the strongest storm ever to make landfall. Storms are one of the most important disturbances to coral reef ecosystems. Previous research has primarily emphasized that habitat recovery is important for the recovery of reef fish communities after disturbance. We understand little, however, about the role of larval dispersal in mediating species responses to disturbance. Reef fish function as metapopulations connected by larval dispersal among reefs, and larval connectivity is therefore a critical process for their dynamics. A field site directly in Typhoon Haiyan's path provides an ideal opportunity to address the role of larval dispersal during recovery. Over the course of four field seasons (2008 to 2013), nearly two thousand clownfish were surveyed along 20km of coastline. Clownfish possess the same basic life history as most reef fish (sedentary adults and pelagic larvae), but are sufficiently rare and visible that genetic parentage methods can be used to follow larval dispersal. This study site is therefore a unique location in which to understand the metapopulation impacts of a massive storm. This project will focus on three hypotheses: 1) Habitat destruction determines the short-term impacts of storms disturbance, 2) Metapopulation processes shape recolonization after disturbance, and 3) Disturbance allows rare competitors to increase in abundance. The project will address these questions with a combination of fixed and random transects to assess reef habitat and reef fish abundance and diversity, as well as detailed, spatially explicit surveys of anemones and clownfish. Genetic mark-recapture and parentage methods with yellowtail clownfish will pinpoint the origin of new recruits that recolonize the reef post-typhoon.</p>
Reef Fish Resilience
largerWorkCitation
project
eng; USA
oceans
West coast of Leyte, Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (10.676940, 124.799170)
124.555
124.8083
10.6299
11.0165
2012-05-05
2018-04-10
West coast of Leyte Island, Visayas, Philippines
0
BCO-DMO catalogue of parameters from Dive log from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/781886.rdf
Name: dive_table_id
Units: unitless
Description: <p>unique identifier of dive; links to anemones table as "dive_table_id"</p>
http://lod.bco-dmo.org/id/dataset-parameter/781887.rdf
Name: dive_num
Units: unitless
Description: <p>dive number within field season</p>
http://lod.bco-dmo.org/id/dataset-parameter/781888.rdf
Name: dive_type
Units: unitless
Description: <p>dive type options:<br />
A - anemone survey dive<br />
B<br />
C - clownfish collection dive<br />
D - clownfish collection with transect (2012)<br />
E - clownfish collection with transect and mapping fish survey (2012)<br />
F - fish transect with quadrats for coral survey<br />
G<br />
H<br />
I<br />
J<br />
K<br />
L<br />
M - mapping fish survey with transect (2012)<br />
N <br />
O<br />
P<br />
Q<br />
R - recapture survey<br />
S<br />
T<br />
U<br />
V<br />
W<br />
X<br />
Y<br />
Z<br />
0 - none of the above</p>
http://lod.bco-dmo.org/id/dataset-parameter/781889.rdf
Name: date
Units: unitless
Description: <p>date of the dive</p>
http://lod.bco-dmo.org/id/dataset-parameter/781890.rdf
Name: site
Units: unitless
Description: <p>site where dive occurred</p>
http://lod.bco-dmo.org/id/dataset-parameter/781891.rdf
Name: municipality
Units: unitless
Description: <p>municipality where dive occurred (Albuera or BayBay)</p>
http://lod.bco-dmo.org/id/dataset-parameter/781892.rdf
Name: gps
Units: unitless
Description: <p>number of GPS unit</p>
http://lod.bco-dmo.org/id/dataset-parameter/781893.rdf
Name: divers
Units: unitless
Description: <p>divers who participated in the dive regardless of role</p>
http://lod.bco-dmo.org/id/dataset-parameter/781894.rdf
Name: start_time
Units: unitless
Description: <p>time began objective: searching for clownfish/anemones/transect; recorded in Asia/Manila timezone</p>
http://lod.bco-dmo.org/id/dataset-parameter/781895.rdf
Name: end_time
Units: unitless
Description: <p>time ended objective as described in start_time; recorded in Asia/Manila timezone</p>
http://lod.bco-dmo.org/id/dataset-parameter/781896.rdf
Name: duration
Units: unitless
Description: <p>end time minus start time</p>
http://lod.bco-dmo.org/id/dataset-parameter/781897.rdf
Name: discontinuous
Units: unitless
Description: <p>1 if objective was interrupted for some reason; like returning to the surface to change gear or stopping to watch a cuddlefish; 0 if there were no interruptions</p>
http://lod.bco-dmo.org/id/dataset-parameter/781898.rdf
Name: pause_start
Units: unitless
Description: <p>the beginning time of the interruption; recorded in Asia/Manila timezone</p>
http://lod.bco-dmo.org/id/dataset-parameter/781899.rdf
Name: pause_end
Units: unitless
Description: <p>the end of the interruption; recorded in Asia/Manila timezone</p>
http://lod.bco-dmo.org/id/dataset-parameter/781900.rdf
Name: weather
Units: unitless
Description: <p>a one or few word description of the weather conditions</p>
http://lod.bco-dmo.org/id/dataset-parameter/781901.rdf
Name: current_knots
Units: knots
Description: <p>an estimation of the current speed</p>
http://lod.bco-dmo.org/id/dataset-parameter/781902.rdf
Name: wave_height_cm
Units: centimeters
Description: <p>an estimation of the height in cm of the waves</p>
http://lod.bco-dmo.org/id/dataset-parameter/781903.rdf
Name: visibility_m
Units: meters
Description: <p>an estimation of how far one can see underwater at reef depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/781904.rdf
Name: wind_mph
Units: miles/hour (mph)
Description: <p>an estimation of wind speed</p>
http://lod.bco-dmo.org/id/dataset-parameter/781905.rdf
Name: tide
Units: unitless
Description: <p>the phase of the tide: rising/falling/high/low</p>
http://lod.bco-dmo.org/id/dataset-parameter/781906.rdf
Name: topo_m
Units: unitless
Description: <p>the distance from depth_top to depth_bottom</p>
http://lod.bco-dmo.org/id/dataset-parameter/781907.rdf
Name: depth_top_m
Units: meters
Description: <p>the shallowest part of the survey in meters</p>
http://lod.bco-dmo.org/id/dataset-parameter/781908.rdf
Name: depth_bottom_m
Units: meters
Description: <p>the deepest part of the survey in meters</p>
http://lod.bco-dmo.org/id/dataset-parameter/781909.rdf
Name: cover
Units: unitless
Description: <p>a brief discription of survey seascape</p>
http://lod.bco-dmo.org/id/dataset-parameter/781910.rdf
Name: dive_notes
Units: unitless
Description: <p>any notes pertaining to the dive</p>
http://lod.bco-dmo.org/id/dataset-parameter/781911.rdf
Name: dive_correction
Units: unitless
Description: <p>if a Y is present then a correction has been made to the data since data entry from the data sheet</p>
http://lod.bco-dmo.org/id/dataset-parameter/781912.rdf
Name: dive_corr_date
Units: unitless
Description: <p>the date of the most recent correction</p>
http://lod.bco-dmo.org/id/dataset-parameter/781913.rdf
Name: dive_corr_editor
Units: unitless
Description: <p>the editor of the most recent correction</p>
http://lod.bco-dmo.org/id/dataset-parameter/781914.rdf
Name: dive_corr_message
Units: unitless
Description: <p>which field was changed from what old value to what new value and why; based on what evidence. If another correction was already present; amend the message to include the date and correction editor of previous corrections</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
136530
https://darchive.mblwhoilibrary.org/bitstream/1912/26340/1/dataset-781671_dive-log__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.781671.1
download
onLine
dataset
<p>Anemone surveyor:<br />
-&nbsp;searches adjacent area for anemone tag (anemone could have moved a few feet since last encounter)<br />
- records time, species, size of anemone, tag number if present<br />
- watches anemone and counts number of fish and estimate sizes (same procedure regardless of species)<br />
- records species of fish, estimate sizes<br />
- adds tag after the fact if one was missing or if there was only one zip tie tag (old system tag)<br />
- flags anemone with flagging tape that it is ready to be hunted if APCL were present.</p>
<p>Fish catcher:<br />
-&nbsp;waits for flagging tape to indicate anemone is ready for fish capture, ok to chase fish if they fled the area<br />
- catches all fish of desired size range and places in holding vessel adjacent to anemone<br />
- can move on to next anemone if anemone surveyor has flagged it</p>
<p>For dive-type codes, see:&nbsp;<a href="https://www.bco-dmo.org/dataset/785633">https://www.bco-dmo.org/dataset/785633</a></p>
<p>Data entry was made with Excel or Google sheets, depending on the internet connection.<br />
Data cleaning was performed in R using the tidyverse package.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Data Processing:</strong><br />
- refomatted 'time' column to ISO_DateTime format (yyyy-mm-ddTHH:MM:SS)</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Biomark 601 PIT tag reader
Biomark 601 PIT tag reader
PI Supplied Instrument Name: Biomark 601 PIT tag reader PI Supplied Instrument Description:Passive Integrated Transponder (PIT) tags help scientists track individual organisms by providing a reliable lifetime 'barcode' for an individual animal. PIT tags are dormant until activated; they therefore do not require any internal source of power throughout their lifespan.To activate the tag, a low-frequency radio signal is emitted by a scanning device that generates a close-range electromagnetic field. The tag then sends a unique alpha-numeric code back to the reader (Keck 1994). Scanners are available as handheld, portable, battery-powered models and as stationary, automated models that are usually used for automated scanning. Instrument Name: tracking tag Instrument Short Name: Instrument Description: Devices attached to living organisms with the purpose of determining the location of those organisms as a function of time after tagging and release.
Deployment: SCUBA_Pinsky_Leyte
SCUBA_Pinsky_Leyte
SCUBA Pinsky Leyte
SCUBA_Pinsky_Leyte
Malin Pinsky
Rutgers University
SCUBA Pinsky Leyte