NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay

Website: https://www.bco-dmo.org/dataset/782300
Version: 0
Version Date: 2019-11-20

Abstract
NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay.


Coverage

Spatial Extent: N:41.7129 E:-71.2674 S:41.4471 W:-71.4007

Dataset Description

NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay. Associated with NCBI BioProject PRJNA566206.


Acquisition Description

Natural seawater was enriched for photoautotrophs and split into multiple temperatures for two weeks. After the enrichment period, Synechococcus was isolated from each temperature. Each isolate's thermal niche was measured through a series of lab experiments and sequenced.

The culture of each isolate was filtered onto 0.22 um PES filters and genomic DNA extracted using Qiagen’s (CA) DNeasy Power Soil Extraction kit. Sequencing was done by Novogene (Beijing, China) on an Illumina 1500 making 2x150 pe reads.


Processing Description

BCO-DMO Processing Notes:
- added conventional header with dataset name, PI name, version date
- modified parameter names to conform with BCO-DMO naming conventions (replaced spaces with underscores)

 


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Parameters

Parameters for this dataset have not yet been identified

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