http://lod.bco-dmo.org/id/dataset/784969
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2019-12-23
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Geochemical concentrations (ppm) of six elements measured in Atlantic croaker otoliths
2019-12-24
publication
2019-12-24
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-03-20
publication
https://doi.org/10.26008/1912/bco-dmo.784969.1
Benjamin Walther
Texas A&M, Corpus Christi
principalInvestigator
Karin Limburg
State University of New York College of Environmental Science and Forestry
principalInvestigator
Dr Zunli Lu
Syracuse University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Walther, B., Limburg, K., Lu, Z. (2020) Geochemical concentrations (ppm) of six elements measured in Atlantic croaker otoliths. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-12-24 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.784969.1 [access date]
Dataset Description: <p>Geochemical concentrations (ppm) of six elements measured in otoliths of Atlantic croaker sampled on board of the R/V Oregon II during the NOAA Seamap Fall Groundfish Survey of 2014 (Oct 10 to Nov 4) and 2015 (Oct 8 to Nov 22).</p> Methods and Sampling: <p>Otolith element concentrations for each individual fish (labeled as “HMU ####”) were measured at the University of Austin, Jackson School of Geosciences using laser ablation inductively coupled mass spectrometry.&nbsp; Standard reference materials included a National Institutes of Standards and Technology glass standard (NIST-612) and a United States Geological Survey microanalytical carbonate standard pressed pellet (MACS-3). Otolith element concentrations were quantified along the longest dorso-ventral axis spanning the core (i.e. hatch) to the edge (i.e. death). Please reference Altenritter et al. (2018) and Altenritter and Walther (2019) for detailed information on sampling and analysis, instrumentation, and data processing.</p>
<p>&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1633020 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1633020
completed
Benjamin Walther
Texas A&M, Corpus Christi
361-825-4168
6300 Ocean Drive Unit # 5858
Corpus Christi
TX
78412
USA
benjamin.walther@tamucc.edu
pointOfContact
Karin Limburg
State University of New York College of Environmental Science and Forestry
315-470-6741
249 Illick Hall 1 Forestry Dr.
Syracuse
NY
13210
United States
klimburg@esf.edu
pointOfContact
Dr Zunli Lu
Syracuse University
315-443-0281
Department of Earth Sciences 310 Heroy Geology Laboratory
Syracuse
NY
13244-1070
United States
zunlilu@syr.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Distance
Mg_m24
Mg_m25
Mn_m55
Sr_m88
In_115
I_m127
Ba_m138
Fish_ID
Agilent 7500ce ICP-Q-MS
theme
None, User defined
length
Magnesium
Manganese
Strontium
No BCO-DMO term
Barium
sample identification
featureType
BCO-DMO Standard Parameters
Mass Spectrometer
instrument
BCO-DMO Standard Instruments
2014_NOAA_Seamap_Fall_Groundfish_Survey
2015_NOAA_Seamap_Fall_Groundfish_Survey
service
Deployment Activity
Gulf of Mexico
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Consequences of sub-lethal hypoxia exposure for teleosts tracked with biogeochemical markers: a trans-basin comparison
https://osprey.bco-dmo.org/project/516275
Collaborative Research: Consequences of sub-lethal hypoxia exposure for teleosts tracked with biogeochemical markers: a trans-basin comparison
<p><em>Description from NSF award abstract:</em><br />
Hypoxia occurs when dissolved oxygen concentrations in aquatic habitats drop below levels required by living organisms. The increased frequency, duration and intensity of hypoxia events worldwide have led to impaired health and functioning of marine and freshwater ecosystems. Although the potential impacts of hypoxic exposure are severe, there is little known about the consequences of systemic, sub-lethal exposure to hypoxic events for populations and communities of fishes. The objective of this project is to determine whether sub-lethal exposure to hypoxia during early life stages leads to poor growth and hence increased mortality. This project will use "environmental fingerprint" methods in fish ear stones (otoliths) retrospectively to identify periods of hypoxia exposure. The project will compare consequences of hypoxia exposure in different fish species from the Gulf of Mexico, the Baltic Sea, and Lake Erie, thus examining the largest anthropogenic hypoxic regions in the world spanning freshwater, estuarine, and marine ecosystems.</p>
<p>This project will employ long-term, permanent markers incorporated into fish otoliths to identify life-long patterns of sub-lethal hypoxia exposure far beyond time spans currently achievable using molecular markers. This work will capitalize on patterns of geochemical proxies such as Mn/Ca and I/Ca incorporated into otoliths and analyzed using laser ablation inductively coupled plasma mass spectrometry to identify patterns of sub-lethal hypoxia exposure. The investigators will then determine whether exposure results in differential growth and survival patterns compared to non-exposed fish by tracking cohorts over time and identifying characteristics of survivors. Because this work involves multiple species in multiple hypoxic regions, it will allow cross-system comparisons among unique ecosystems. The results from this project will thus provide unprecedented insight into effects of hypoxia exposure in three major basins using novel biogeochemical proxies, thereby paving the way for a fuller understanding of the impacts of "dead zones" on coastal resources.</p>
OtolithHypoxia
largerWorkCitation
project
eng; USA
oceans
Gulf of Mexico
2014-10-21
2015-11-22
Northern Gulf of Mexico, Baltic Sea, and Lake Erie
0
BCO-DMO catalogue of parameters from Geochemical concentrations (ppm) of six elements measured in Atlantic croaker otoliths
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/805315.rdf
Name: Distance
Units: Microns (um)
Description: <p>Otolith transect distance traversed by laser; distance across the otolith.</p>
http://lod.bco-dmo.org/id/dataset-parameter/805316.rdf
Name: Mg_m24
Units: Parts per million (ppm)
Description: <p>Concentration of Magnesium isotope 24</p>
http://lod.bco-dmo.org/id/dataset-parameter/805317.rdf
Name: Mg_m25
Units: Parts per million (ppm)
Description: <p>Concentration of Magnesium isotope 25</p>
http://lod.bco-dmo.org/id/dataset-parameter/805318.rdf
Name: Mn_m55
Units: Parts per million (ppm)
Description: <p>Concentration of Manganese isotope 55</p>
http://lod.bco-dmo.org/id/dataset-parameter/805319.rdf
Name: Sr_m88
Units: Parts per million (ppm)
Description: <p>Concentration of Strontium isotope 88</p>
http://lod.bco-dmo.org/id/dataset-parameter/805320.rdf
Name: In_115
Units: Parts per million (ppm)
Description: <p>Concentration of Indium isotope 115</p>
http://lod.bco-dmo.org/id/dataset-parameter/805321.rdf
Name: I_m127
Units: Parts per million (ppm)
Description: <p>Concentration of Iodine isotope 127</p>
http://lod.bco-dmo.org/id/dataset-parameter/805322.rdf
Name: Ba_m138
Units: Parts per million (ppm)
Description: <p>Concentration of Barium isotope 138</p>
http://lod.bco-dmo.org/id/dataset-parameter/805323.rdf
Name: Fish_ID
Units: unitless
Description: <p>Fish ID; number of each individual fish</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
64863828
https://darchive.mblwhoilibrary.org/bitstream/1912/25553/1/dataset-784969_atlantic-croaker-otolith-geochemical-concentrations__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.784969.1
download
onLine
dataset
<p>Otolith element concentrations for each individual fish (labeled as “HMU ####”) were measured at the University of Austin, Jackson School of Geosciences using laser ablation inductively coupled mass spectrometry.&nbsp; Standard reference materials included a National Institutes of Standards and Technology glass standard (NIST-612) and a United States Geological Survey microanalytical carbonate standard pressed pellet (MACS-3). Otolith element concentrations were quantified along the longest dorso-ventral axis spanning the core (i.e. hatch) to the edge (i.e. death). Please reference Altenritter et al. (2018) and Altenritter and Walther (2019) for detailed information on sampling and analysis, instrumentation, and data processing.</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
<p>Raw element intensities were converted to element concentrations (ppm) in the data reduction program Iolite.</p>
<p>BCO-DMO processing notes:</p>
<ul>
<li>Adjusted titles to comply to database requirements</li>
<li>Rounded Distance header to 3 decimals</li>
</ul>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Agilent 7500ce ICP-Q-MS
Agilent 7500ce ICP-Q-MS
PI Supplied Instrument Name: Agilent 7500ce ICP-Q-MS PI Supplied Instrument Description:Analytical instrumentation included an Agilent 7500ce ICP-Q-MS coupled with a UP-193 FX laser ablation system Instrument Name: Mass Spectrometer Instrument Short Name:Mass Spec Instrument Description: General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/
Cruise: 2014_NOAA_Seamap_Fall_Groundfish_Survey
2014_NOAA_Seamap_Fall_Groundfish_Survey
Community Standard Description
International Council for the Exploration of the Sea
R/V Oregon II
vessel
2014_NOAA_Seamap_Fall_Groundfish_Survey
Dr Andre J. Debose
National Oceanic and Atmospheric Administration
Cruise: 2015_NOAA_Seamap_Fall_Groundfish_Survey
2015_NOAA_Seamap_Fall_Groundfish_Survey
Community Standard Description
International Council for the Exploration of the Sea
R/V Oregon II
vessel
2015_NOAA_Seamap_Fall_Groundfish_Survey
Dr Andre J. Debose
National Oceanic and Atmospheric Administration
Community Standard Description
International Council for the Exploration of the Sea
R/V Oregon II
vessel