http://lod.bco-dmo.org/id/dataset/787575
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-01-16
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Biogeochemical data collected during the Flower Garden Banks Rapid Response Cruise, FGB-RR16, on R/V Manta in the Flower Garden Banks National Marine Sanctuary from July to August 2016
2020-01-16
publication
2020-01-16
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-02-06
publication
https://doi.org/10.1575/1912/bco-dmo.787575.1
Kathryn E.F. Shamberger
Texas A&M University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Shamberger, K. (2020) Biogeochemical data collected during the Flower Garden Banks Rapid Response Cruise, FGB-RR16, on R/V Manta in the Flower Garden Banks National Marine Sanctuary from July to August 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-01-16 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.787575.1 [access date]
Biogeochemical data collected during the Flower Garden Banks Rapid Response Cruise Dataset Description: <p>This dataset combines the biogeochemical data collected during the Flower Garden Banks Rapid Response Cruise which occurred following the discovery of the localized mortality event.</p> Methods and Sampling: <p>The CTD (SBE-25) was equipped with 6 4L niskin bottles and was used to measure temperature and salinity. Niskins were used to collect water samples for carbonate chemistry (i.e., DIC and TA), oxygen, and nutrients. Water samples for DIC and TA were collected according to the methods in Dickson et al. (2007), and analyzed at TAMU using a VINDTA 3C. Certified Reference Materials (CRMs) were provided by A. Dickson at Scripps Institute of Oceanography (Dickson et al. 2007) and were used to calibrate for TA and DIC. The reproducibility of these samples was 1.43 ± 1.07 μmol kg-1 for TA and 2.64 ± 1.24 μmol kg-1 for DIC. Dissolved oxygen (DO) was measured using Winkler titrations. After collecting the water from the Niskin into flasks, aliquots of manganese chloride and sodium hydroxide-sodium iodide were added. The titration was performed directly after water collection using sodium thiosulfate; Winkler titration was performed with an amperometric dead-stop endpoint determination with a double platinum electrode. Nutrient samples (nitrate, nitrite, ammonium, phosphate, and silicate) were collected into polycarbonate flasks after filtration through GF/C 0.7-um pore size filters, frozen, and analyzed ashore using standard World Ocean Circulation Experiment (WOCE) segmented flow methodologies using an Astoria Analyzer (Astoria-Pacific) (Gordon 1994 ).</p>
<p>Sampling gaps are reported as "nd" in the dataset.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1800913 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1800913
completed
Kathryn E.F. Shamberger
Texas A&M University
979-845-5752
Eller O&M Building, Rm 1204
College Station
TX
77843-3146
USA
katie.shamberger@tamu.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Cast
Salinity
Depth
Date
GMT_Time
Local_Time
Lat
Long
Temp
DIC
TA
pH
fCO2
Omega_Ar
p_dens
O2
NO3
HPO4
HSIO3
NH4
NO2
Urea
ISO_DateTime_GMT
VINDTA 3C
4L niskin bottles
Astoria Analyzer
CTD SBE-25
Winkler titration
theme
None, User defined
cast
salinity
depth
date
time_gmt
time_local
latitude
longitude
water temperature at measurement depth
dissolved inorganic Carbon
total alkalinity (TA)
pH
fugacity of CO2
Aragonite Saturation State
density
dissolved Oxygen
Nitrate
reactive phosphorus (PO4)
Anionic Silicate (-2)
Ammonium
Nitrite
Urea
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
MARIANDA VINDTA 3C total inorganic carbon and titration alkalinity analyser
Niskin bottle
Nutrient Autoanalyzer
Sea-Bird SBE 25 Sealogger CTD
Winkler Oxygen Titrator
instrument
BCO-DMO Standard Instruments
FGB-RR16
service
Deployment Activity
Flower Garden Banks National Marine Sanctuary, West Flower Garden Bank and East Flower Garden Bank
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities
https://osprey.bco-dmo.org/project/746814
RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities
<p><em>NSF Award Abstract:</em><br />
Coral reefs are ecologically and economically important ecosystems, and are threatened by a variety of global (climate change) and local (overfishing, pollution) stressors. Anthropogenic climate change is increasing the frequency and severity of storms, which can physically damage reef structures and reduce reef health through changes in seawater quality. In August of 2017, Hurricane Harvey caused widespread flooding in southeast Texas when it released more than 50 trillion liters of rain, which then accumulated along the Texas Shelf. This runoff is expected to impact nearby coral reefs in the Flower Garden Banks National Marine Sanctuary (FGBNMS, northwest Gulf of Mexico) via eddies and jets that transport coastal waters offshore. Findings from this project will allow managers to quickly predict whether extreme storm events are likely to induce reef mortality and ecosystem decline due to freshwater accumulation, by tracking of low salinity water masses coupled with microbial community characterization and metrics of coral health. These data are critical to managing coastal ecosystems, including the high coral cover reefs in the FGBNMS, and will help stakeholders (e.g., diving and fishing communities) plan for and minimize disruption to their livelihoods following these storms. Results will be communicated broadly across scientific arenas, in graduate and undergraduate education and training programs, and to the general public through outreach. The investigators have seven 7 square meter 2-D Reef Replicas from 2014 depicting representative FGBNMS reef bottoms, and will construct additional 2-D Reef Replicas from both banks following the arrival of Harvey runoff, allowing the public to directly experience and quantify the effects of Hurricane Harvey on local reefs using quadrats and identification guides. This project will also synergize with NSF REU programs at Boston University and Texas A&M University, providing transformative research experiences for undergraduates. One post-doctoral scholar, four graduate students, a technician and more than 5 undergraduates will be involved in all aspects of the research. All datasets will be made freely available to the public, and will serve as an important set of baselines for future lines of inquiry into the processes by which hurricanes and other extreme storms impact reef health.</p>
<p>Hurricanes and other extreme storm events can decimate coral reefs through wave-driven physical damage. Freshwater runoff from extreme storms is also potentially detrimental to reefs but has received comparatively less attention. This research will provide unprecedented resolution on how hurricanes and other extreme storm events may trigger cascading interactions among water chemistry, declines in metazoan health and shifts in their associated microbial communities, ultimately resulting in coral reef decline. The freshwater runoff initiated by Hurricane Harvey is likely to impact reefs within the FGBNMS, one of the few remaining coral-dominated reefs in the greater Caribbean. The effects of Harvey runoff will be compared to a previously documented storm-driven runoff event that was associated with invertebrate mortality on the same reef system. Sampling seawater chemistry, microbial communities (water column and benthic), and host gene expression and proteomics before, immediately after, and six months after Harvey runoff enters the FGBNMS will allow us to identify commonalities among large-scale freshwater runoff events and track the response of benthic invertebrate health, microbial community diversity, and the trajectory of reef community recovery or decline. The investigators will determine if changes in water chemistry induce pelagic microbial shifts, if microbial communities typically associated with corals and sponges are altered, and whether feedbacks occur between these potential drivers of benthic invertebrate mortality.</p>
Rapid Reefs Harvey
largerWorkCitation
project
eng; USA
oceans
Flower Garden Banks National Marine Sanctuary, West Flower Garden Bank and East Flower Garden Bank
-93.93
-93.517
27.75
28.033
2016-07-31
2016-08-01
Flower Garden Banks National Marine Sanctuary, Northwest Gulf of Mexico
0
BCO-DMO catalogue of parameters from Biogeochemical data collected during the Flower Garden Banks Rapid Response Cruise, FGB-RR16, on R/V Manta in the Flower Garden Banks National Marine Sanctuary from July to August 2016
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/787713.rdf
Name: Cast
Units: unitless
Description: <p>cast number</p>
http://lod.bco-dmo.org/id/dataset-parameter/787714.rdf
Name: Salinity
Units: unitless
Description: <p>salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/787715.rdf
Name: Depth
Units: meters (m)
Description: <p>depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/787716.rdf
Name: Date
Units: unitless
Description: <p>Date; format: yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/787717.rdf
Name: GMT_Time
Units: unitless
Description: <p>Time (GMT); format: hh:mm:ss</p>
http://lod.bco-dmo.org/id/dataset-parameter/787718.rdf
Name: Local_Time
Units: unitless
Description: <p>Local time; format: hh:mm:ss</p>
http://lod.bco-dmo.org/id/dataset-parameter/787719.rdf
Name: Lat
Units: decimal degrees
Description: <p>latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/787720.rdf
Name: Long
Units: decimal degrees
Description: <p>longitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/787721.rdf
Name: Temp
Units: degrees Celsius
Description: <p>temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/787722.rdf
Name: DIC
Units: micromoles per kilogram (umol kg-1)
Description: <p>dissolved inorganic carbon</p>
http://lod.bco-dmo.org/id/dataset-parameter/787723.rdf
Name: TA
Units: micromoles per kilogram (umol kg-1)
Description: <p>total alkalinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/787724.rdf
Name: pH
Units: total scale
Description: <p>pH</p>
http://lod.bco-dmo.org/id/dataset-parameter/787725.rdf
Name: fCO2
Units: microatmospheres (uatm)
Description: <p>carbon dioxide fugacity</p>
http://lod.bco-dmo.org/id/dataset-parameter/787726.rdf
Name: Omega_Ar
Units: unitless
Description: <p>aragonite saturation state</p>
http://lod.bco-dmo.org/id/dataset-parameter/787727.rdf
Name: p_dens
Units: kilograms per cubic meter (kg m-3)
Description: <p>potenial density</p>
http://lod.bco-dmo.org/id/dataset-parameter/787728.rdf
Name: O2
Units: milliliters per liter (ml l-1)
Description: <p>dissolved oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/787729.rdf
Name: NO3
Units: micromolar (uM)
Description: <p>nitrate</p>
http://lod.bco-dmo.org/id/dataset-parameter/787730.rdf
Name: HPO4
Units: micromolar (uM)
Description: <p>phosphate</p>
http://lod.bco-dmo.org/id/dataset-parameter/787731.rdf
Name: HSIO3
Units: micromolar (uM)
Description: <p>silicate</p>
http://lod.bco-dmo.org/id/dataset-parameter/787732.rdf
Name: NH4
Units: micromolar (uM)
Description: <p>ammonia</p>
http://lod.bco-dmo.org/id/dataset-parameter/787733.rdf
Name: NO2
Units: micromolar (uM)
Description: <p>nitrite</p>
http://lod.bco-dmo.org/id/dataset-parameter/787734.rdf
Name: Urea
Units: micromolar (uM)
Description: <p>urea</p>
http://lod.bco-dmo.org/id/dataset-parameter/787735.rdf
Name: ISO_DateTime_GMT
Units: yyyy-MM-dd'T'HH:mm:ss
Description: <p>Date and time (GMT) formatted to ISO 8601 standard. Format: yyyy-mm-ddTHH:MM:SSZ</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
20589
https://darchive.mblwhoilibrary.org/bitstream/1912/25322/1/dataset-787575_biogeochemistry-fgbrr16__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.787575.1
download
onLine
dataset
<p>The CTD (SBE-25) was equipped with 6 4L niskin bottles and was used to measure temperature and salinity. Niskins were used to collect water samples for carbonate chemistry (i.e., DIC and TA), oxygen, and nutrients. Water samples for DIC and TA were collected according to the methods in Dickson et al. (2007), and analyzed at TAMU using a VINDTA 3C. Certified Reference Materials (CRMs) were provided by A. Dickson at Scripps Institute of Oceanography (Dickson et al. 2007) and were used to calibrate for TA and DIC. The reproducibility of these samples was 1.43 ± 1.07 μmol kg-1 for TA and 2.64 ± 1.24 μmol kg-1 for DIC. Dissolved oxygen (DO) was measured using Winkler titrations. After collecting the water from the Niskin into flasks, aliquots of manganese chloride and sodium hydroxide-sodium iodide were added. The titration was performed directly after water collection using sodium thiosulfate; Winkler titration was performed with an amperometric dead-stop endpoint determination with a double platinum electrode. Nutrient samples (nitrate, nitrite, ammonium, phosphate, and silicate) were collected into polycarbonate flasks after filtration through GF/C 0.7-um pore size filters, frozen, and analyzed ashore using standard World Ocean Circulation Experiment (WOCE) segmented flow methodologies using an Astoria Analyzer (Astoria-Pacific) (Gordon 1994 ).</p>
<p>Sampling gaps are reported as "nd" in the dataset.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing:<br />
- renamed fields (removed spaces and units);&nbsp;<br />
- formatted date column to yyyy-mm-dd (was m/d/yy);<br />
- corrected year value of 2006 to 2016 (in row 128);<br />
- added ISO_DateTime column<br />
- replaced "nan" with "nd" (no data)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
VINDTA 3C
VINDTA 3C
PI Supplied Instrument Name: VINDTA 3C Instrument Name: MARIANDA VINDTA 3C total inorganic carbon and titration alkalinity analyser Instrument Short Name:inorganic carbon and alkalinity analyser Instrument Description: The Versatile INstrument for the Determination of Total inorganic carbon and titration Alkalinity (VINDTA) 3C is a laboratory alkalinity titration system combined with an extraction unit for coulometric titration, which simultaneously determines the alkalinity and dissolved inorganic carbon content of a sample. The sample transport is performed with peristaltic pumps and acid is added to the sample using a membrane pump. No pressurizing system is required and only one gas supply (nitrogen or dry and CO2-free air) is necessary. The system uses a Metrohm Titrino 719S, an ORION-Ross pH electrode and a Metrohm reference electrode. The burette, the pipette and the analysis cell have a water jacket around them. Precision is typically +/- 1 umol/kg for TA and/or DIC in open ocean water. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0481/
4L niskin bottles
4L niskin bottles
PI Supplied Instrument Name: 4L niskin bottles Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Astoria Analyzer
Astoria Analyzer
PI Supplied Instrument Name: Astoria Analyzer Instrument Name: Nutrient Autoanalyzer Instrument Short Name:Nutrient Autoanalyzer Instrument Description: Nutrient Autoanalyzer is a generic term used when specific type, make and model were not specified. In general, a Nutrient Autoanalyzer is an automated flow-thru system for doing nutrient analysis (nitrate, ammonium, orthophosphate, and silicate) on seawater samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB04/
CTD SBE-25
CTD SBE-25
PI Supplied Instrument Name: CTD SBE-25 Instrument Name: Sea-Bird SBE 25 Sealogger CTD Instrument Short Name:CTD SBE 25 Instrument Description: The Sea-Bird SBE 25 SEALOGGER CTD is battery powered and is typically used to record data in memory, eliminating the need for a large vessel, electrical sea cable, and on-board computer. All SBE 25s can also operate in real-time, transmitting data via an opto-isolated RS-232 serial port. Temperature and conductivity are measured by the SBE 3F Temperature sensor and SBE 4 Conductivity sensor (same as those used on the premium SBE 9plus CTD). The SBE 25 also includes the SBE 5P (plastic) or 5T (titanium) Submersible Pump and TC Duct. The pump-controlled, TC-ducted flow configuration significantly reduces salinity spiking caused by ship heave, and in calm waters allows slower descent rates for improved resolution of water column features. Pressure is measured by the modular SBE 29 Temperature Compensated Strain-Gauge Pressure sensor (available in eight depth ranges to suit the operating depth requirement). The SBE 25's modular design makes it easy to configure in the field for a wide range of auxiliary sensors, including optional dissolved oxygen (SBE 43), pH (SBE 18 or SBE 27), fluorescence, transmissivity, PAR, and optical backscatter sensors. More information from Sea-Bird Electronics: http:www.seabird.com. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0040/
Winkler titration
Winkler titration
PI Supplied Instrument Name: Winkler titration Instrument Name: Winkler Oxygen Titrator Instrument Short Name:Winkler Titrator Instrument Description: A Winkler Oxygen Titration system is used for determining concentration of dissolved oxygen in seawater. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Cruise: FGB-RR16
FGB-RR16
R/V Manta
R/V Manta
vessel
FGB-RR16
Steven DiMarco
Texas A&M University
https://datadocs.bco-dmo.org/docs/Rapid_Reefs_Harvey/data_docs/fgbrr16cruisereport.pdf
Report describing FGB-RR16
R/V Manta
R/V Manta
vessel