http://lod.bco-dmo.org/id/dataset/794342
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-02-26
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013
2020-02-26
publication
2020-02-26
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-03-04
publication
https://doi.org/10.1575/1912/bco-dmo.794342.1
Brian M. Hopkinson
University of Georgia
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Hopkinson, B. (2020) Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-02-26 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.794342.1 [access date]
Internal carbonic anhydrase activity in three species of coral from the Florida Keys Dataset Description: Methods and Sampling: <p>Fragments of Orbicella faveolata, Porites astreoides were collected from Little Grecian reef (25.1193 N 80.3008 W) and Siderastrea radians was collected from Florida Bay (25.1017 N, 80.4391 W) in Key Largo, FL, USA, in August of 2013 as permitted by the Florida Keys National Marine Sanctuary (FKNMS-2011-093, FKNMS-2014-015). Exposed skeleton was covered with modeling clay, and the colonies were maintained in closed circulation tanks filled with reef seawater, allowing at least 2 days of recovery after collection prior to experimentation. The tank was exposed to a natural light regime, with shading added at midday to keep solar irradiance below 600 umol photons m−2 s−1.</p>
Funding provided by NSF Emerging Frontiers Division (NSF EF) Award Number: EF-1315944 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1315944
completed
Brian M. Hopkinson
University of Georgia
706-542-7880
Department of Marine Sciences
Athens
Georgia
30602
USA
bmhopkin@uga.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Species
Sample
kif
Latitude
Longitude
Collection_Date
Pfeiffer QMS220M2
theme
None, User defined
species scientific name (binomial)
sample identification
No BCO-DMO term
latitude
longitude
date
featureType
BCO-DMO Standard Parameters
Mass Spectrometer
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:
NSF 10-530, FY 2010-FY2011
NSF 12-500, FY 2012
NSF 12-600, FY 2013
NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:
1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)
2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Ocean Carbon and Biogeochemistry
http://us-ocb.org/
Ocean Carbon and Biogeochemistry
The Ocean Carbon and Biogeochemistry (OCB) program focuses on the ocean's role as a component of the global Earth system, bringing together research in geochemistry, ocean physics, and ecology that inform on and advance our understanding of ocean biogeochemistry. The overall program goals are to promote, plan, and coordinate collaborative, multidisciplinary research opportunities within the U.S. research community and with international partners. Important OCB-related activities currently include: the Ocean Carbon and Climate Change (OCCC) and the North American Carbon Program (NACP); U.S. contributions to IMBER, SOLAS, CARBOOCEAN; and numerous U.S. single-investigator and medium-size research projects funded by U.S. federal agencies including NASA, NOAA, and NSF.
The scientific mission of OCB is to study the evolving role of the ocean in the global carbon cycle, in the face of environmental variability and change through studies of marine biogeochemical cycles and associated ecosystems.
The overarching OCB science themes include improved understanding and prediction of: 1) oceanic uptake and release of atmospheric CO2 and other greenhouse gases and 2) environmental sensitivities of biogeochemical cycles, marine ecosystems, and interactions between the two.
The OCB Research Priorities (updated January 2012) include: ocean acidification; terrestrial/coastal carbon fluxes and exchanges; climate sensitivities of and change in ecosystem structure and associated impacts on biogeochemical cycles; mesopelagic ecological and biogeochemical interactions; benthic-pelagic feedbacks on biogeochemical cycles; ocean carbon uptake and storage; and expanding low-oxygen conditions in the coastal and open oceans.
OCB
largerWorkCitation
program
Ocean Acidification: Coral Inorganic Carbon Processing in Response to Ocean Acidification
https://osprey.bco-dmo.org/project/521205
Ocean Acidification: Coral Inorganic Carbon Processing in Response to Ocean Acidification
<p><em>NSF Award Abstract: </em><br />
A significant portion of the carbon dioxide generated by human activity and released into the atmosphere dissolves into ocean waters, leading to ocean acidification. Acidification can impair the ability of many calcifying organisms, including reef-building corals, to form their calcium carbonate shells or skeletons but the mechanism of these effects is not well understood. This project will improve understanding of inorganic carbon processing in corals thereby providing insight into the effects of ocean acidification on calcification and photosynthesis in corals. Microelectrodes and membrane inlet mass spectrometry (MIMS) will be applied to measure the concentration and reaction rates of inorganic carbon and other chemical species involved in calcification and photosynthesis in three species of Caribbean corals. A major goal is to validate the use of MIMS techniques and microelectrodes in corals. Measurements will be used to develop a numerical model of inorganic carbon processing in corals, allowing chemical fluxes and the composition of the calcifying fluid to be constrained. Improved mechanistic understanding of the effects of ocean acidification on corals will permit robust predications about the longer-term effects of ocean acidification on corals and coral reefs. Broader Impacts: This project will improve predictions of the effects of ocean acidification on corals and coral reef ecosystems. Undergraduate and graduate students will be trained on the project and outreach activities include educating K-12 students and the general public about ocean acidification. A teaching module on the effects of ocean acidification on corals will be added to an existing set of ocean acidification lesson plans and a collaboration with the Driftwood Education Center will be established to make use of the ocean acidification teaching module. The investigators will host an annual mini-symposium called "Symbiofest", which attracts scientists working on corals and other symbioses from around the south-east and beyond.</p>
OA_coral_Ci_acquisition
largerWorkCitation
project
eng; USA
oceans
-80.4391
-80.3008
25.1017
25.1193
2013-08-01
2013-08-31
Florida Keys, Laboratory in Athens Georgia
0
BCO-DMO catalogue of parameters from Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/794657.rdf
Name: Species
Units: unitless
Description: <p>Species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/794658.rdf
Name: Sample
Units: unitless
Description: <p>Sample ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/794659.rdf
Name: kif
Units: /s
Description: <p>Internal carbonic anhydrase (CA) activity</p>
http://lod.bco-dmo.org/id/dataset-parameter/794660.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude of sample collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/794661.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude of sample collection</p>
http://lod.bco-dmo.org/id/dataset-parameter/794662.rdf
Name: Collection_Date
Units: unitless
Description: <p>Year and month of sample collection; format: yyyy-mm</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1239
https://darchive.mblwhoilibrary.org/bitstream/1912/25466/1/dataset-794342_coral-ica-activity__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.794342.1
download
onLine
dataset
<p>Fragments of Orbicella faveolata, Porites astreoides were collected from Little Grecian reef (25.1193 N 80.3008 W) and Siderastrea radians was collected from Florida Bay (25.1017 N, 80.4391 W) in Key Largo, FL, USA, in August of 2013 as permitted by the Florida Keys National Marine Sanctuary (FKNMS-2011-093, FKNMS-2014-015). Exposed skeleton was covered with modeling clay, and the colonies were maintained in closed circulation tanks filled with reef seawater, allowing at least 2 days of recovery after collection prior to experimentation. The tank was exposed to a natural light regime, with shading added at midday to keep solar irradiance below 600 umol photons m−2 s−1.</p>
Specified by the Principal Investigator(s)
<p>Coral external carbonic anhydrase (CA) activity was measured on each fragment using an 18O-exchange technique described in (Tansik et al. 2015). Coral tissue was then removed using an air-brush filled with artificial seawater. The coral-algal slurry was homogenized and then centrifuged to remove symbiotic algae. A portion of the purified homogenate was then assessed for total CA activity using an 18O-exchange approach. Internal CA activity was determined by subtracting external CA activity from total CA activity. All 18O-exchange data was processed using MATLAB code, which is publicly available at <a href="https://github.com/bmhopkinson/18O_processing" target="_blank">https://github.com/bmhopkinson/18O_processing</a>. Methodological details are described in Hopkinson et al. (2015).</p>
<p>Note:<br />
Brian Hopkinson's github repo has been forked by BCO-DMO to ensure a copy of the code is available. This can be accessed at&nbsp;<a href="https://github.com/BCODMO/18O_processing" target="_blank">https://github.com/BCODMO/18O_processing</a>. A .zip file of the code is also attached to this dataset as a Supplemental File.</p>
<p>BCO-DMO Processing:<br />
- modified columnn names;<br />
- added columns for: Latitude, Longitude, Collection_Date;<br />
- forked original github repo and downloaded a .zip file of the code.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Pfeiffer QMS220M2
Pfeiffer QMS220M2
PI Supplied Instrument Name: Pfeiffer QMS220M2 PI Supplied Instrument Description:18O-exchange was measured using a Pfeiffer QMS220M2 mass spectrometer. Instrument Name: Mass Spectrometer Instrument Short Name:Mass Spec Instrument Description: General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB16/