http://lod.bco-dmo.org/id/dataset/805488
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-03-06
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Mussels and associated organisms sampling information collected in the Pacific margin of Costa Rica.The collections were made aboard R/V Atlantis in 2017 and 2018 using DSV Alvin. The 2019 collections were made aboard R/V Falkor, using the ROV Subastian
2020-03-06
publication
2020-03-06
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-07-30
publication
https://doi.org/10.26008/1912/bco-dmo.805488.1
Erik E. Cordes
Temple University
principalInvestigator
Lisa A. Levin
University of California-San Diego Scripps
principalInvestigator
Victoria J. Orphan
California Institute of Technology
principalInvestigator
Christopher Neil Roman
University of California-San Diego Scripps
principalInvestigator
Gregory Rouse
University of California-San Diego Scripps
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Cordes, E., Orphan, V., Rouse, G., Levin, L., Roman, C. (2020) Mussels and associated organisms sampling information collected in the Pacific margin of Costa Rica.The collections were made aboard R/V Atlantis in 2017 and 2018 using DSV Alvin. The 2019 collections were made aboard R/V Falkor, using the ROV Subastian. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-03-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.805488.1 [access date]
Dataset Description: <p>Sampling information from mussels and associated organisms collected from different seep sites off the Costa Rica margin. The collections were made aboard R/V Atlantis during 2017 and 2018 using DSV Alvin. In 2019 the collections were made aboard R/V Falkor, using the ROV Subastian. Sampling information contains length, height, width, Phylum, Class, Order, Family and Genus.</p> Methods and Sampling: <p>Mussel samples were collected using deep sea vehicle Alvin and ROV Subastian, on R/V Atlantis and R/V Falkor. Methods used for collection involved either grabs, mussel pots, the bushmaster junior, suction apparatus or net scoops:</p>
<ul>
<li>Mussel Pot – The mussel pot is a 12-quart aluminium-clad stainless steel pot with a twistable handle connected to a Kevlar bag insert. It is used to sample mussel beds and associated communities. The pot is deployed over the select mussel patch using the submersible or ROV manipulator, then collects the enclosed assemblage by cinching the Kevlar bag closed by turning the handle. This method allows for quantitative analysis of deep-sea mussel bed communities.</li>
<li>Bushmaster – Original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. Like the mussel pot, this allows for quantitative collections of tubeworm communities.</li>
<li>Slurp – This is simply the term used for suction sampler that attached to the submersible or ROV and collected organisms by suctioning them into an enclosed container.</li>
</ul>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1635219 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1635219
completed
Erik E. Cordes
Temple University
215-204-8876
Temple University Biology-Life Sciences 315
Philadelphia
PA
19122
USA
ecordes@temple.edu
pointOfContact
Lisa A. Levin
University of California-San Diego Scripps
858-534-3579
9500 Gilman Drive Mail Code: 0218
La Jolla
CA
92093-0218
USA
llevin@ucsd.edu
pointOfContact
Victoria J. Orphan
California Institute of Technology
626-395-1786
109A North Mudd MC 100-23
Pasadena
CA
91125
USA
vorphan@caltech.edu
pointOfContact
Christopher Neil Roman
University of California-San Diego Scripps
508-274-0232
215 South Ferry Road
Narragansett
RI
02879
USA
croman2@uri.edu
pointOfContact
Gregory Rouse
University of California-San Diego Scripps
858-534-7973
9500 Gilman Drive Mail Code: 0202
La Jolla
CA
92093
USA
grouse@ucsd.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Cruise_number
Sample_number
Associated_sample
Dive
Location
Latitude
Longitude
Depth
Date
Time
Collected_in
Tentative_ID
Length
Height
Width
Phylum
Class
Order
Family
Genus
Species
ISO_DateTime_UTC
Bushmaster
Mussel Pot
Slurp
theme
None, User defined
Cruise identfier
sample identification
dive_id
station
latitude
longitude
depth
date_utc
time_utc
sample description
length
height
width
phylum
taxonomic class
order
family
genus
species scientific name (binomial)
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
Bottom Sediment Grab Samplers
Bushmaster
Mussel Pot
Sediment suction sampler
instrument
BCO-DMO Standard Instruments
AT37-13
AT42-03
AT37-13_Alvin_Dives
AT42-03_Alvin_Dives
FK190106
service
Deployment Activity
Pacific margin of Costa Rica
methane seeps in the Pacific Ocean off Costa Rica
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea
https://osprey.bco-dmo.org/project/648472
Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea
<p><em>NSF abstract:</em><br />
If life were to disappear from the deep sea, would we notice? We only have a cursory understanding of this vast region and the connectivity among its communities and the rest of the oceans, and yet the ecosystems of the deep sea have been implicated in the larger function of the global marine ecosystems. We now rely on the deep ocean for food, energy, novel drugs and materials, and for its role in the global cycling of carbon, as well as for supporting services such as habitat creation, nutrient replenishment for shallow waters, and the maintenance of biodiversity. Cold seeps, active areas of the seafloor where methane and other chemicals are released, are key features along the continental margins worldwide. To characterize how methane seep communities interact with the surrounding ecosystems and vice versa, we will study methane seeps off the Pacific coast of Costa Rica in 2017 and 2018. It is the sphere of influence around the seep, both along the seafloor and up into the water column, that we seek to better understand. We will map the structure and the chemistry surrounding these habitats using a novel 3-dimensional framework, combining typical transects with vertical characterizations of the water column just above the seafloor. This will include measurements of methane flux into the water column and changes in the overlying carbonate chemistry and oxygen levels that are critical to our understanding of the effect of warming, oxygen loss and ocean acidification in this region. Within this framework, we will collect seep organisms in sediments and on rocks (including all sizes from microbes to large animals), and transplant some of these from within the area of seep influence to the background deep sea, and vice-versa. Together, these studies will help us to measure the size of the seep sphere of influence, and also demonstrate the role of these seeps within the deep sea and the greater, global, marine ecosystem. We will share this information with a group of teachers during a series of workshops in the San Diego area, at an exhibit at the Birch Aquarium, and through the work of an artist who has worked extensively with marine organisms in extreme environments.</p>
<p>Chemosynthetic ecosystems are inextricably linked to the broader world-ocean biome and global biogeochemical cycles in ways that we are just beginning to understand. This research will identify the form, extent, and nature of the physical, chemical, and biological linkages between methane seeps and the surrounding deep-sea ecosystem. The proposed research builds critical understanding of the structural and functional processes that underpin the ecosystem services provided by chemosynthetic ecosystems. We target a critical continental margin, Costa Rica, where methane fates and dynamics loom large and play out in an setting that reflects many oceanographic stressors. We will use quantitative sampling and manipulative studies within a 3-dimensional oceanographic framework. We will ask what are the shapes of the diversity and density functions for organisms of different size classes and trophic position over the transition from the seep habitat through the ecotone to the background deep sea? Further, we will ask how do depth, dissolved oxygen concentrations, pH and carbonate ion availability, relative rates of fluid flux, and substrate (biogenic, authigenic carbonate, sediments) alter these linkages and interactions with the surrounding deep sea? Evidence for distinct transitional communities and biotic patterns in density and alpha and beta diversity will be quantified and placed in a global biogeographic context. All of these investigations will occur across biological size spectra: for microorganisms (archaea, bacteria, microeukaryotes), the macrofauna, and the megafauna that form biogenic habitats. Our research results will be interpreted in the context of potential effects of global ocean change in the equatorial Pacific to determine how the linkages with the surrounding deep sea will be altered as anthropogenic impacts proceed in the future. </p>
<p><strong>Related publications:</strong><br />
Levin, L.A., V.J. Orphan, G.W. Rouse, W. Ussler, A. E. Rathburn, G. S. Cook, S. Goffredi, E. Perez, A. Waren, B. Grupe, G. Chadwick, B. Strickrott. (2012). A hydrothermal seep on the Costa Rica margin: Middle ground in a continuum of reducing ecosystems. <em>Proc. Royal Soc. B.</em> 279: 2580-88 doi: <a href="http://dx.doi.org/10.1098/rspb.2012.0205" target="_blank">10.1098/rspb.2012.0205</a></p>
<p>Sahling, H., Masson, D. G., Ranero, C. R., Hühnerbach, V., Weinrebe, W., Klaucke, I., & Suess, E. (2008). Fluid seepage at the continental margin offshore Costa Rica and southern Nicaragua. <em>Geochemistry, Geophysics, Geosystems</em> 9: doi: <a href="http://dx.doi.org/10.1029/2008GC001978" target="_blank">10.1029/2008GC001978</a></p>
Costa Rica Seeps
largerWorkCitation
project
eng; USA
oceans
Pacific margin of Costa Rica; methane seeps in the Pacific Ocean off Costa Rica
-84.8395
-84.3123
8.9299
9.12153
2017-05-22
2019-01-10
Costa Rica Pacific Margin
0
BCO-DMO catalogue of parameters from Mussels and associated organisms sampling information collected in the Pacific margin of Costa Rica.The collections were made aboard R/V Atlantis in 2017 and 2018 using DSV Alvin. The 2019 collections were made aboard R/V Falkor, using the ROV Subastian
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/806651.rdf
Name: Cruise_number
Units: unitless
Description: <p>Cruise code #</p>
http://lod.bco-dmo.org/id/dataset-parameter/806652.rdf
Name: Sample_number
Units: unitless
Description: <p>Sample number assigned on board</p>
http://lod.bco-dmo.org/id/dataset-parameter/806653.rdf
Name: Associated_sample
Units: unitless
Description: <p>Related sample code if collected together</p>
http://lod.bco-dmo.org/id/dataset-parameter/806654.rdf
Name: Dive
Units: unitless
Description: <p>Submersible dive #</p>
http://lod.bco-dmo.org/id/dataset-parameter/806655.rdf
Name: Location
Units: unitless
Description: <p>Dive location</p>
http://lod.bco-dmo.org/id/dataset-parameter/806656.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude of sample - south is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/806657.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude of sample - west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/806658.rdf
Name: Depth
Units: meter (m)
Description: <p>Depth sample collected at</p>
http://lod.bco-dmo.org/id/dataset-parameter/806659.rdf
Name: Date
Units: unitless
Description: <p>Date sample collected on - format YYYY-MM-DD (in UTC)</p>
http://lod.bco-dmo.org/id/dataset-parameter/806660.rdf
Name: Time
Units: unitless
Description: <p>Time sample collected at - format HH:SS (in UTC)</p>
http://lod.bco-dmo.org/id/dataset-parameter/806661.rdf
Name: Collected_in
Units: unitless
Description: <p>Instrument/box collected in</p>
http://lod.bco-dmo.org/id/dataset-parameter/806662.rdf
Name: Tentative_ID
Units: unitless
Description: <p>ID given on board the ship</p>
http://lod.bco-dmo.org/id/dataset-parameter/806663.rdf
Name: Length
Units: centimeter (cm)
Description: <p>Organism length</p>
http://lod.bco-dmo.org/id/dataset-parameter/806664.rdf
Name: Height
Units: centimeter (cm)
Description: <p>Organism height</p>
http://lod.bco-dmo.org/id/dataset-parameter/806665.rdf
Name: Width
Units: centimeter (cm)
Description: <p>Organism width</p>
http://lod.bco-dmo.org/id/dataset-parameter/806666.rdf
Name: Phylum
Units: unitless
Description: <p>Phylum</p>
http://lod.bco-dmo.org/id/dataset-parameter/806667.rdf
Name: Class
Units: unitless
Description: <p>Class</p>
http://lod.bco-dmo.org/id/dataset-parameter/806668.rdf
Name: Order
Units: unitless
Description: <p>Order</p>
http://lod.bco-dmo.org/id/dataset-parameter/806669.rdf
Name: Family
Units: unitless
Description: <p>Family</p>
http://lod.bco-dmo.org/id/dataset-parameter/806670.rdf
Name: Genus
Units: unitless
Description: <p>Genus</p>
http://lod.bco-dmo.org/id/dataset-parameter/806671.rdf
Name: Species
Units: unitless
Description: <p>Species</p>
http://lod.bco-dmo.org/id/dataset-parameter/806672.rdf
Name: ISO_DateTime_UTC
Units: yyyy-MM-dd'T'HH:mm'Z'
Description: <p>ISO format of Date and Time in UTC (YYYY-MM-DDTHH:MMZ)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
49116
https://darchive.mblwhoilibrary.org/bitstream/1912/26031/1/dataset-805488_mussel-dataset__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.805488.1
download
onLine
dataset
<p>Mussel samples were collected using deep sea vehicle Alvin and ROV Subastian, on R/V Atlantis and R/V Falkor. Methods used for collection involved either grabs, mussel pots, the bushmaster junior, suction apparatus or net scoops:</p>
<ul>
<li>Mussel Pot – The mussel pot is a 12-quart aluminium-clad stainless steel pot with a twistable handle connected to a Kevlar bag insert. It is used to sample mussel beds and associated communities. The pot is deployed over the select mussel patch using the submersible or ROV manipulator, then collects the enclosed assemblage by cinching the Kevlar bag closed by turning the handle. This method allows for quantitative analysis of deep-sea mussel bed communities.</li>
<li>Bushmaster – Original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. Like the mussel pot, this allows for quantitative collections of tubeworm communities.</li>
<li>Slurp – This is simply the term used for suction sampler that attached to the submersible or ROV and collected organisms by suctioning them into an enclosed container.</li>
</ul>
Specified by the Principal Investigator(s)
<p>Samples were processed aboard R/V Atlantis and R/V Falkor and sent back to Temple University, PA, USA for processing</p>
<p>BCO-DMO processing notes:</p>
<ul>
<li>Adjusted column names to comply with dataset requirements</li>
<li>Added ISO_DateTime_UTC column</li>
<li>Reformated time to HH:MM</li>
<li>Reformated date to YYYY-MM-DD</li>
</ul>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
PI Supplied Instrument Name: Instrument Name: Bottom Sediment Grab Samplers Instrument Short Name:BSGS Instrument Description: These samplers are designed to collect an accurate representative sample of the sediment bottom. The bite of the sampler should be deep enough so all depths are sampled equally. The closing mechanism is required to completely close and hold the sample as well as prevent wash-out during retrieval. Likewise, during descent the sampler should be designed to minimize disturbance of the topmost sediment by the pressure wave as it is lowered to the bottom. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/50/
Bushmaster
Bushmaster
PI Supplied Instrument Name: Bushmaster PI Supplied Instrument Description:Original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. Like the mussel pot, this allows for quantitative collections of tubeworm communities. Instrument Name: Bushmaster Instrument Short Name: Instrument Description: Bushmaster samplers are original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. This allows for quantitative collections of tubeworm communities.
Mussel Pot
Mussel Pot
PI Supplied Instrument Name: Mussel Pot PI Supplied Instrument Description:The mussel pot is a 12-quart aluminium-clad stainless steel pot with a twistable handle connected to a Kevlar bag insert. It is used to sample mussel beds and associated communities. The pot is deployed over the select mussel patch using the submersible or ROV manipulator, then collects the enclosed assemblage by cinching the Kevlar bag closed by turning the handle. This method allows for quantitative analysis of deep-sea mussel bed communities. Instrument Name: Mussel Pot Instrument Short Name: Instrument Description: The mussel pot is a 12-quart aluminium-clad stainless steel pot with a twistable handle connected to a Kevlar bag insert. It is used to sample mussel beds and associated communities. The pot is deployed over the select mussel patch using the submersible or ROV manipulator, then collects the enclosed assemblage by cinching the Kevlar bag closed by turning the handle. This method allows for quantitative analysis of deep-sea mussel bed communities.
Slurp
Slurp
PI Supplied Instrument Name: Slurp Instrument Name: Sediment suction sampler Instrument Short Name: Instrument Description: Devices that collect samples from the sediment layer surface using suction. The mechanism of suction can be accomplished by either vacuum, by pressure difference between the air inside the sampler and surrounding water, by pumping water directly into the sampler, or by under pressure air to elevate the sediment inside the sampler. Devices are typically diver- or remotely-operated.
Cruise: AT37-13
AT37-13
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT37-13
Erik E. Cordes
Temple University
Cruise: AT42-03
AT42-03
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT42-03
Erik E. Cordes
Temple University
Deployment: AT37-13_Alvin_Dives
AT37-13_Alvin_Dives
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
AT37-13_Alvin_Dives
Victoria J. Orphan
California Institute of Technology
Deployment: AT42-03_Alvin_Dives
AT42-03_Alvin_Dives
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
Cruise: FK190106
FK190106
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel
FK190106
Erik E. Cordes
Temple University
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
R/V Falkor
Community Standard Description
International Council for the Exploration of the Sea
R/V Falkor
vessel