http://lod.bco-dmo.org/id/dataset/809428
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-04-15
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
CTD profile data from R/V Pt. Sur PS 18-09 Legs 01 and 03, Sept. - Oct. 2017
2020-04-15
publication
2020-04-15
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-01-11
publication
https://doi.org/10.26008/1912/bco-dmo.809428.1
Lisa Campbell
Texas A&M University
principalInvestigator
Anthony Knap
Texas A&M University
principalInvestigator
Steven DiMarco
Texas A&M University
principalInvestigator
Darren W. Henrichs
Texas A&M University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Campbell, L., Knap, A., DiMarco, S., Henrichs, D. W. (2021) CTD profile data from R/V Pt. Sur PS 18-09 Legs 01 and 03, Sept. - Oct. 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-04-15 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.809428.1 [access date]
HRR ctd Dataset Description: <p>Processed CTD profile data from all electronic sensors mounted on rosette from R/V Pt. Sur PS 18-09 Legs 01 and 03, Hurricane Harvey RAPID Response cruise (western Gulf of Mexico) September-October 2017.</p> Methods and Sampling: <p>Raw hex datafiles were produced by the CTD were processed using manufacturer-supplied software, Seabird SeaSave.&nbsp;SBE Data Processing Version 7.26.6.28 was used to process the raw Sea-Bird CTD data (.hex) into a human-readable format (.cnv). The order of functions ran via SBE Data Processing was:</p>
<p>1. Data Conversion: to convert hex-files into human readable format;<br />
2. Filter: apply low-pass filter to collected data;<br />
3, Align CTD: to temporally align T and C sensors. Time constant equals 3.5 s (Gulf of Mexico);<br />
4. Cell Thermal Mass: applies thermal mass correct;<br />
5. Loop Edit: to remove effects of ship heave;<br />
6. Derive: to estimate derived quantities such as salinity, density, dissolved oxygen concentration, potential temperature, etc; and<br />
7. Bin Average: average data into vertical bins, downcast only.</p>
<p>See zipped metadata of individual files for date of calibration and calibration coefficients - Supplemental Files, below.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1760620 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1760620
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1760381 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1760381
completed
Lisa Campbell
Texas A&M University
979-845-5706
3146 TAMU, Department of Oceanography Texas A&M University
College Station
Texas
77843
USA
lisacampbell@tamu.edu
pointOfContact
Anthony Knap
Texas A&M University
441-297-1880 ext. 244 or 237
Bermuda Institute of Ocean Sciences 17 Biological Lane
St. George's
GE 01
Bermuda
tony.knap@bios.edu
pointOfContact
Steven DiMarco
Texas A&M University
sdimarco@tamu.edu
pointOfContact
Darren W. Henrichs
Texas A&M University
979-845-5738
3146 TAMU, Department of Oceanography Texas A&M University
College Station
Texas
77843
USA
dhenrichs@tamu.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
file_name
HHR_leg
station
lat_decdeg
lon_decdeg
ISO_DateTime_UTC
prDM
t090C
t190C
c0S_m
sal00_1
sal11
sbeox0V
sbeox0ML_L_1
sbeox1V
sbeox1ML_L_1
cpar
CStarAt0
CStarTr0
par
wetCDOM
flECO_AFL
depSM
sal00_2
sigma_e00
sbeox0ML_L_2
sbeox1ML_L_2
potemp090C
potemp190C
flag
CTD system (11plus V 5.2)
theme
None, User defined
flag
leg of cruise
station
latitude
longitude
ISO_DateTime_UTC
water pressure
water temperature at measurement depth
conductivity
salinity
Oxygen in volts
dissolved Oxygen
PAR
beam attenuation
transmission
colored or chromophoric dissolved organic matter
depth
sigma-theta
potential temperature
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird SBE 911plus
instrument
BCO-DMO Standard Instruments
PS1809
service
Deployment Activity
Western Gulf of Mexico, Continental Shelf, Louisiana and Texas coasts
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Hurricane Impact on Phytoplankton Community Dynamics and Metabolic Response
https://osprey.bco-dmo.org/project/715170
RAPID: Hurricane Impact on Phytoplankton Community Dynamics and Metabolic Response
<p><em>NSF Award Abstract:</em><br />
Hurricane Harvey is the strongest hurricane to hit the Texas coast in decades and the resulting tidal surges, flooding and terrestrial runoff have had a severe impact on the coastal ocean. The effects on the phytoplankton, the first link in the food chain, may be unprecedented. To determine how the phytoplankton community will respond to such drastic changes in salinity, nutrient inputs, and potential toxins, immediate and continuous sampling is the only way to fully capture the effects and to identify when conditions return to "normal". An automated, continuous phytoplankton imaging instrument that is deployed on the Texas coast records images of the phytoplankton and permits calculation of the abundance of different species. Together with molecular information on the genes that have been "turned on", or expressed, outcomes of this project will help determine the responses of individual types of phytoplankton. Extreme storms are expected to increase in frequency with future climate change, so the responses identified now will be valuable in predicting how such events will affect these primary producers, which in turn support most of the food webs in marine ecosystems, in the future.</p>
<p>High temporal resolution observations from the Imaging FlowCytobot (IFCB) have revealed that hurricanes in the Gulf of Mexico cause drastic changes in the phytoplankton community structure. The objectives of this RAPID project are: 1) to characterize the dynamics of the phytoplankton species in relation to the environmental variables along the Texas coast; 2) to assess the short and long-term changes in the phytoplankton community; and 3) to identify the strategies of the phytoplankton community for resource acquisition. To accomplish these objectives, this project will utilize IFCB time series to follow phytoplankton community structure during the recovery period from Hurricane Harvey. In addition, two RAPID response cruises (in late September and early October) to sample at 5 sites along a transect from Galveston to Port Aransas, TX. At each station, CTD profiles and water samples from surface and the chlorophyll maximum will be collected for nutrients, carbonate chemistry, and RNA sequencing for metatranscriptomic analysis. Metatranscriptomics can provide an indication of the metabolic strategies employed and functional relationships within the plankton community in response to changes in the environment. The advantage of a metatranscriptomic approach is that the entire molecular response to the environment is captured. So, while the response of phytoplankton to increased nutrient inputs from floodwater runoff is targeted, the responses to other environmental stresses (toxics, hypoxia, acidification) are also captured. Analyses of this time series using multivariate statistical techniques, such as principal component analysis (PCA), and network analysis, a powerful technique for identifying potential interactions among taxa, will provide insights on the environmental factors and metabolic responses structuring the community during the aftermath of the hurricane.</p>
<p><strong>Related data from the The Texas Observatory for Algal Succession Time-Series (TOAST) can be found at the following: </strong><a href="https://toast.tamu.edu/timeline?dataset=HRR_Cruise" target="_blank">https://toast.tamu.edu/timeline?dataset=HRR_Cruise</a></p>
HRR
largerWorkCitation
project
eng; USA
oceans
Western Gulf of Mexico, Continental Shelf, Louisiana and Texas coasts
-97.2683
-93.5325
27.0932
29.4907
2017-09-23
2017-10-01
Texas coast
0
BCO-DMO catalogue of parameters from CTD profile data from R/V Pt. Sur PS 18-09 Legs 01 and 03, Sept. - Oct. 2017
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/809448.rdf
Name: file_name
Units: unitless
Description: <p>name of the originators file</p>
http://lod.bco-dmo.org/id/dataset-parameter/809449.rdf
Name: HHR_leg
Units: unitless
Description: <p>cruise leg identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/809450.rdf
Name: station
Units: unitless
Description: <p>station identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/809451.rdf
Name: lat_decdeg
Units: decimal degrees
Description: <p>latitude with positive values indicating North</p>
http://lod.bco-dmo.org/id/dataset-parameter/809452.rdf
Name: lon_decdeg
Units: decimal degrees
Description: <p>longitude with negative values indicating West</p>
http://lod.bco-dmo.org/id/dataset-parameter/809453.rdf
Name: ISO_DateTime_UTC
Units: yyyy-MM-dd'T'HH:mm:ss'Z'
Description: <p>Date and time in UTC following ISO8601 format</p>
http://lod.bco-dmo.org/id/dataset-parameter/809454.rdf
Name: prDM
Units: decibar (db)
Description: <p>Pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/809455.rdf
Name: t090C
Units: degrees Celsius (C)
Description: <p>Temperature ITS-90</p>
http://lod.bco-dmo.org/id/dataset-parameter/809456.rdf
Name: t190C
Units: degrees Celsius (C)
Description: <p>Temperature 2 ITS-90</p>
http://lod.bco-dmo.org/id/dataset-parameter/809457.rdf
Name: c0S_m
Units: Siemens per meter (S/m)
Description: <p>Conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/809458.rdf
Name: sal00_1
Units: PSU
Description: <p>Practical Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/809459.rdf
Name: sal11
Units: PSU
Description: <p>Practical Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/809460.rdf
Name: sbeox0V
Units: volts (V)
Description: <p>Oxygen raw SBE 43 from primary sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/809461.rdf
Name: sbeox0ML_L_1
Units: milliliters per liter (ml/l)
Description: <p>Oxygen SBE 43 from primary sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/809462.rdf
Name: sbeox1V
Units: volts (V)
Description: <p>Oxygen raw SBE 43 from secondary sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/809463.rdf
Name: sbeox1ML_L_1
Units: milliliters per liter (ml/l)
Description: <p>Oxygen SBE 43 from secondary sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/809464.rdf
Name: cpar
Units: percent (%)
Description: <p>CPAR/Corrected Irradiance</p>
http://lod.bco-dmo.org/id/dataset-parameter/809465.rdf
Name: CStarAt0
Units: per meter (1/m)
Description: <p>Beam Attenuation; WET Labs C-Star</p>
http://lod.bco-dmo.org/id/dataset-parameter/809466.rdf
Name: CStarTr0
Units: percent (%)
Description: <p>Beam Transmission; WET Labs C-Star</p>
http://lod.bco-dmo.org/id/dataset-parameter/809467.rdf
Name: par
Units: unknown
Description: <p>PAR/Irradiance Biospherical/Licor</p>
http://lod.bco-dmo.org/id/dataset-parameter/809468.rdf
Name: wetCDOM
Units: milligrams/meter^3 [mg/m^3]
Description: <p>Fluorescence; WET Labs CDOM</p>
http://lod.bco-dmo.org/id/dataset-parameter/809469.rdf
Name: flECO_AFL
Units: millligrams/meter^3 [mg/m^3]
Description: <p>Fluorescence; WET Labs ECO-AFL/FL</p>
http://lod.bco-dmo.org/id/dataset-parameter/809470.rdf
Name: depSM
Units: meters (m)
Description: <p>Depth in salt water at specified latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/809471.rdf
Name: sal00_2
Units: Practical Salinity Units (PSU)
Description: <p>Practical Salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/809472.rdf
Name: sigma_e00
Units: kilogram per meter cubed (kg/m3)
Description: <p>Density sigma-theta</p>
http://lod.bco-dmo.org/id/dataset-parameter/809473.rdf
Name: sbeox0ML_L_2
Units: milliliters per liter (ml/l)
Description: <p>Oxygen SBE 43 from primary sensor; WS=5 (?)</p>
http://lod.bco-dmo.org/id/dataset-parameter/809474.rdf
Name: sbeox1ML_L_2
Units: milliliters per liter (ml/l)
Description: <p>Oxygen SBE 43 from secondary sensor; WS=5 (?)</p>
http://lod.bco-dmo.org/id/dataset-parameter/809475.rdf
Name: potemp090C
Units: degrees Celsius
Description: <p>Potential temperature fro ITS-90</p>
http://lod.bco-dmo.org/id/dataset-parameter/809476.rdf
Name: potemp190C
Units: degrees Celsius
Description: <p>Potential temperature fro ITS-190</p>
http://lod.bco-dmo.org/id/dataset-parameter/809477.rdf
Name: flag
Units: unitless
Description: <p>data quality flag; 0 indicates good value</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
1605693
https://darchive.mblwhoilibrary.org/bitstream/1912/26557/1/dataset-809428_hrr-2017-ctd__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.809428.1
download
onLine
dataset
<p>Raw hex datafiles were produced by the CTD were processed using manufacturer-supplied software, Seabird SeaSave.&nbsp;SBE Data Processing Version 7.26.6.28 was used to process the raw Sea-Bird CTD data (.hex) into a human-readable format (.cnv). The order of functions ran via SBE Data Processing was:</p>
<p>1. Data Conversion: to convert hex-files into human readable format;<br />
2. Filter: apply low-pass filter to collected data;<br />
3, Align CTD: to temporally align T and C sensors. Time constant equals 3.5 s (Gulf of Mexico);<br />
4. Cell Thermal Mass: applies thermal mass correct;<br />
5. Loop Edit: to remove effects of ship heave;<br />
6. Derive: to estimate derived quantities such as salinity, density, dissolved oxygen concentration, potential temperature, etc; and<br />
7. Bin Average: average data into vertical bins, downcast only.</p>
<p>See zipped metadata of individual files for date of calibration and calibration coefficients - Supplemental Files, below.</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes:</strong><br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions (e.g., replaced spaces and hyphens with underscores)<br />
- extracted&nbsp;filename, date-time, lat, and lon from individual file headers<br />
- converted date-time to ISO_DateTime_UTC<br />
- converted lat and long from degrees/min/sec to decimal degrees<br />
- extracted the HHR leg number and station id from the file_name to separate columns<br />
- concatenated all .cnv data into a single file<br />
- joined CTD data with header data (file_name, leg, station, ISO_DateTime_UTC, lat, lon)<br />
- removed columns of raw voltages V3, V4, V5</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD system (11plus V 5.2)
CTD system (11plus V 5.2)
PI Supplied Instrument Name: CTD system (11plus V 5.2) PI Supplied Instrument Description:These sensors were deployed with the CTD:
Temperature sensor (Channel 1; S/N: 5134)
Conductivity (Channel 2; S/N: 2922)
Digiquartz pressure sensor (Channel 2; S/N: 45)
Temperature Sensor (Channel 4; S/N: 4488)
Conductivity (Channel 5; S/N: 2629)
Dissolved oxygen (Channel 6; SBE-43; S/N: 0174)
Dissolved oxygen (Channel 7; SBE-43; S/N: 3554)
CDOM Fluorometer (Channel 8; WetLABS ECO, S/N:1379)
Chlorophyll Fluorometer (Channel 9; WetLABS ECO-AFL, S/N: 1051)
Altimeter (Channel 10; S/N 27002)
PAR (Channel 12; Biospherical/Licor/Chelsea PAR/Irradiance, S/N: 4530)
Transmissometer (Channel 13, WetLabs C-Star, S/N: CST-703DR)
SPAR Surface Irradiance (Channel 15, S/N: 20148) Instrument Name: CTD Sea-Bird SBE 911plus Instrument Short Name:CTD SBE 911plus Instrument Description: The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/
Cruise: PS1809
PS1809
R/V Point Sur
Community Standard Description
International Council for the Exploration of the Sea
R/V Point Sur
vessel
PS1809
Lisa Campbell
Texas A&M University
R/V Point Sur
Community Standard Description
International Council for the Exploration of the Sea
R/V Point Sur
vessel