http://lod.bco-dmo.org/id/dataset/814406
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-06-04
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Acetate and methanol turnover rates from sediment push cores collected during HOV Alvin dives during the R/V Atlantis cruise AT37-06 in Guaymas Basin, Gulf of California in December 2016
2020-06-04
publication
2020-06-04
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-12-09
publication
https://doi.org/10.26008/1912/bco-dmo.814406.1
Samantha B. Joye
University of Georgia
principalInvestigator
Andreas Teske
University of North Carolina at Chapel Hill
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Joye, S. B., Teske, A. P. (2020) Acetate and methanol turnover rates from sediment push cores collected during HOV Alvin dives during the R/V Atlantis cruise AT37-06 in Guaymas Basin, Gulf of California in December 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-06-04 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.814406.1 [access date]
Methods and Sampling: Methodology:
Sediment samples were collected from hydrothermal areas of Guaymas Basin in the Gulf of California during cruise AT3706 of R/V Atlantis in December 2016. Push cores were obtained using the human-occupied deep diving vehicle Alvin during dives 4867 to 4872. Porewater was extracted from the sediment by centrifugation and then filtered through a 0.2 μm syringe filter. For rate measurements, approximately 3 mL of live sediment was transferred into a modified Hungate tube as described previously (Bowles et al., 2011). At each depth, triplicate live samples and one killed control were collected for the quantification of acetate and methanol turnover rates. The details of the rate measurements can be found in Zhuang et al. (2018).
Instruments:
Methanol and ethanol in the porewater were quantified with a purge and trap system connected to a GC–FID (SRI) (Zhuang et al., 2018).
Issues of note: Due to the limited volume of porewaters, methanol and ethanol were not determined for most of the samples collected from Dives 4867 to Dive 4870.
Missing data identifiers:
* B.D.: Below detection limit.
* nd：Not determined. nd is the default missing data identifier in the BCO-DMO data system.
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1357360 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1357360
completed
Samantha B. Joye
University of Georgia
706-542-5893
Dept. of Marine Sciences 325 Sanford Drive
Athens
GA
30602
USA
mjoye@uga.edu
pointOfContact
Andreas Teske
University of North Carolina at Chapel Hill
508-287-1648
Department of Marine Sciences 3117B Venable Hall, CB 3300
Chapel Hill
NC
27599
USA
teske@email.unc.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Dive_No
Site
Sampling_date
Latitude
Longitude
Depth
Incubation_T
Acetate_methanogenesis_rate
Acetate_turnover_time_to_methane
Aceate_Oxidation_rate
Actate_turnover_to_CO2
Methanol_methanogenesis_rate
Methanol_turnover_time_to_methane
Methanol_Oxidation_rate
Methanol_turnover_to_CO2
theme
None, User defined
dive_id
site
date_utc
latitude
longitude
depth core
water temperature at measurement depth
No BCO-DMO term
time_elapsed
featureType
BCO-DMO Standard Parameters
AT37-06
AT37-06_Alvin_Dives
service
Deployment Activity
Guaymas Basin
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Microbial Carbon cycling and its interactions with Sulfur and Nitrogen transformations in Guaymas Basin hydrothermal sediments
https://osprey.bco-dmo.org/project/474317
Collaborative Research: Microbial Carbon cycling and its interactions with Sulfur and Nitrogen transformations in Guaymas Basin hydrothermal sediments
<p><em>Description from NSF award abstract:</em><br />
Hydrothermally active sediments in the Guaymas Basin are dominated by novel microbial communities that catalyze important biogeochemical processes in these seafloor ecosystems. This project will investigate genomic potential, physiological capabilities and biogeochemical roles of key uncultured organisms from Guaymas sediments, especially the high-temperature anaerobic methane oxidizers that occur specifically in hydrothermally active sediments (ANME-1Guaymas). The study will focus on their role in carbon transformations, but also explore their potential involvement in sulfur and nitrogen transformations. First-order research topics include quantifying anaerobic methane oxidation under high temperature,in situ concentrations of phosphorus and methane , and with alternate electron acceptors; sulfate and sulfur-dependent microbial pathways and isotopic signatures under these conditions; and nitrogen transformations in methane-oxidizing microbial communities, hydrothermal mats and sediments.</p>
<p>This integrated biogeochemical and microbiological research will explore the pathways of and environmental controls on the consumption and production of methane, other alkanes, inorganic carbon, organic acids and organic matter that fuel the Guaymas sedimentary microbial ecosystem. The hydrothermal sediments of Guaymas Basin provide a spatially compact, high-activity location for investigating novel modes of methane cycling and carbon assimilation into microbial biomass. In the case of anaerobic methane oxidation, the high temperature and pressure tolerance of Guaymas Basin methane-oxidizing microbial communities, and their potential to uncouple from the dominant electron acceptor sulfate, vastly increase the predicted subsurface habitat space and biogeochemical role for anaerobic microbial methanotrophy in global deep subsurface diagenesis. Further, microbial methane production and oxidation interlocks with syulfur and nitrogen transformations, which will be explored at the organism and process level in hydrothermal sediment microbial communities and mats of Guaymas Basin. In general, first-order research tasks (rate measurements, radiotracer incorporation studies, genomes, in situ microgradients) define the key microbial capabilities, pathways and processes that mediate chemical exchange between the subsurface hydrothermal/seeps and deep ocean waters.</p>
Guaymas Basin Interactions
largerWorkCitation
project
eng; USA
oceans
Guaymas Basin
-111.47317
-111.38417
27.00733
27.46667
2016-12-18
2016-12-24
Guaymas Basin, Gulf of California, 27.00 N, 111.00W
0
BCO-DMO catalogue of parameters from Acetate and methanol turnover rates from sediment push cores collected during HOV Alvin dives during the R/V Atlantis cruise AT37-06 in Guaymas Basin, Gulf of California in December 2016
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/814684.rdf
Name: Dive_No
Units: unitless
Description: <p>Dive number</p>
http://lod.bco-dmo.org/id/dataset-parameter/814685.rdf
Name: Site
Units: unitless
Description: <p>Site name</p>
http://lod.bco-dmo.org/id/dataset-parameter/814686.rdf
Name: Sampling_date
Units: unitless
Description: <p>Sample date (UTC) in ISO 8601 format yyyy-mm-dd</p>
http://lod.bco-dmo.org/id/dataset-parameter/814687.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/814688.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/814689.rdf
Name: Depth
Units: centimeters (cm)
Description: <p>Sediment sampling depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/814690.rdf
Name: Incubation_T
Units: degrees Celsius
Description: <p>Incubation temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/814691.rdf
Name: Acetate_methanogenesis_rate
Units: picomoles per cubic centimeter per day (pmol cm-3 d-1)
Description: <p>Methanogenesis rate from acetate measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814692.rdf
Name: Acetate_turnover_time_to_methane
Units: days
Description: <p>The turnover time acetate to methane measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814693.rdf
Name: Aceate_Oxidation_rate
Units: picomoles per cubic centimeter per day (pmol cm-3 d-1)
Description: <p>Acetate oxidation rate measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814694.rdf
Name: Actate_turnover_to_CO2
Units: days
Description: <p>The turnover time of acetate to CO2 measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814695.rdf
Name: Methanol_methanogenesis_rate
Units: picomoles per cubic centimeter per day (pmol cm-3 d-1)
Description: <p>Methanogenesis rate from methanol measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814696.rdf
Name: Methanol_turnover_time_to_methane
Units: days
Description: <p>The turnover time methanol to methane measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814697.rdf
Name: Methanol_Oxidation_rate
Units: picomoles per cubic centimeter per day (pmol cm-3 d-1)
Description: <p>Methanol oxidation rate measured with radiotracers</p>
http://lod.bco-dmo.org/id/dataset-parameter/814698.rdf
Name: Methanol_turnover_to_CO2
Units: days
Description: <p>The turnover time of methanol to CO2 measured with radiotracers</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3206
https://darchive.mblwhoilibrary.org/bitstream/1912/26462/1/dataset-814406_at37-06-acetate-and-methanol-turnover-rates__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.814406.1
download
onLine
dataset
Methodology:
Sediment samples were collected from hydrothermal areas of Guaymas Basin in the Gulf of California during cruise AT3706 of R/V Atlantis in December 2016. Push cores were obtained using the human-occupied deep diving vehicle Alvin during dives 4867 to 4872. Porewater was extracted from the sediment by centrifugation and then filtered through a 0.2 μm syringe filter. For rate measurements, approximately 3 mL of live sediment was transferred into a modified Hungate tube as described previously (Bowles et al., 2011). At each depth, triplicate live samples and one killed control were collected for the quantification of acetate and methanol turnover rates. The details of the rate measurements can be found in Zhuang et al. (2018).
Instruments:
Methanol and ethanol in the porewater were quantified with a purge and trap system connected to a GC–FID (SRI) (Zhuang et al., 2018).
Issues of note: Due to the limited volume of porewaters, methanol and ethanol were not determined for most of the samples collected from Dives 4867 to Dive 4870.
Missing data identifiers:
* B.D.: Below detection limit.
* nd：Not determined. nd is the default missing data identifier in the BCO-DMO data system.
Specified by the Principal Investigator(s)
BCO-DMO Data Manager Processing Notes:
* Data submitted in Excel file "Data submission OCE.xlsx" sheet "Rate" extracted to csv
* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions (spaces, +, and - changed to underscores). Units in parentheses removed and added to Parameter Description metadata section.
* The default missing identifier in the original file N.D. for "not determined" is displayed as "nd" in the data. nd is the default missing data identifier in the BCO-DMO system.
* removed metadata notes at the bottom of the file and moved to parameter descriptions. E.g. "B.D.: Below detection limit."
* Date formats converted to ISO 8601 yyyy-mm-dd
* Lat/lon converted to decimal degrees from degrees decimal minutes
* values rounded to integer instead of the scientific notation for _time_to_ columns which have units of days. (Acetate_turnover_time_to_methane, Actate_turnover_to_CO2,
Methanol_turnover_time_to_methane, Methanol_turnover_to_CO2)
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Cruise: AT37-06
AT37-06
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT37-06
Andreas Teske
University of North Carolina at Chapel Hill
https://datadocs.bco-dmo.org/d3/data_docs/GuaymasBasin_Interactions/AT37-06_CruiseReport.pdf
Report describing AT37-06
Deployment: AT37-06_Alvin_Dives
AT37-06_Alvin_Dives
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned
AT37-06_Alvin_Dives
Andreas Teske
University of North Carolina at Chapel Hill
https://datadocs.bco-dmo.org/d3/data_docs/GuaymasBasin_Interactions/AT37-06_CruiseReport.pdf
Report describing AT37-06_Alvin_Dives
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
HOV Alvin
Community Standard Description
International Council for the Exploration of the Sea
HOV Alvin
submarine-manned