Water quality data from surveys, experiments and the NERR data sonde, sub-tropical estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019

Website: https://www.bco-dmo.org/dataset/821061
Data Type: Other Field Results
Version: 1
Version Date: 2020-07-29

» Collaborative Research: RAPID: Quantifying mechanisms by which Hurricane Michael facilitates a stable-state reversal on oyster reefs (Oyster Reef Reversal)
Kimbro, David L.Northeastern UniversityPrincipal Investigator
Stallings, Christopher D.University of South Florida (USF)Co-Principal Investigator
White, J. WilsonOregon State University (OSU)Co-Principal Investigator
Copley, NancyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Water quality data from surveys, experiments and the National Estuarine Research Reserve (NERR) data sonde, sub-tropical estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019.


Spatial Extent: Lat:29.67227 Lon:-84.33465
Temporal Extent: 2013-01-01 - 2019-12-14

Dataset Description

Water quality data from surveys, experiments and the National Estuarine Research Reserve (NERR) data sonde, sub-tropical estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019.

Acquisition Description

Site Selection- From Hanley et. al 2019, this was a multi-step process that first involved using ArcGIS to partition the bay’s oyster reefs (commercial and non-commercial) into six zones. Zone assignment was based on the reef’s relative distance by water from the river input (near, mid, far) as well as a reef’s east-west orientation to the river (East Apalachicola and West Apalachicola). Next, we randomly selected three reefs out of all possible reefs (including the experimental reefs) within each zone.

Surveys- Methods for surveys done from 2013-2016 were taken from Hanley et al. 2019.

Surveys 2013-2016-On each reef subtidal reef, we obtained spatially balanced samples by extending four 20 m transects at 90 degree angles from the boat. Along each transect, we overlaid a 0.25 m2 weighted quadrat at the 5, 10, 15, and 20 m marks. For each quadrat, we collected the entire contents of the quadrat into a uniquely labeled mesh bag, transported the bag to the surface, and placed the bag on ice to be processed at the lab. For intertidal reefs, we sampled 2 quadrats per reef, ‘low’ (located at the low water level) and ‘high’ (2 m above the low transect) quadrats centered along a 20 m transect on each reef.

Surveys 2019- Sites were selected from previously sampled reefs. Subtidal surveys were conducted by divers on SCUBA. A buoy was dropped at the sites. The divers attached a 10m transect to the buoy and surveyed the area in the four cardinal directions (North, South, East and West). We characterized the substrate 0.5m on each side of the transect as mud, sand or shell hash, as well as quantified the amount of oyster shells and counted the number of Oyster Drills (Stramonita haemastoma). If there were oysters or shells at meter 5 or meter 10 along the transect then everything in a 0.25m2 quadrat was collected and processed at the lab. We only sampled the intertidal sites in December 2019. We laid a transect across the crest of the reef and then divided the length of the transect by 7 to get a consistent sampling interval. At each sampling interval we recorded the width of the sampling side and then placed a 0.0625m2 quadrat at the midpoint of the sampling width and collected all the contents to be brought back to the lab and processed.

Water Quality Data - For each sample labeled 'survey', 'experiment' or 'spat', we used a YSI to obtain dissolved oxygen, temperature, salinity and pH at the surface and at the bottom.

Samples labeled 'surveys', 'experiments' or 'spat' were collected during surveys and experiments with a YSI Pro 2030. Samples collected from the Apalachicola Bay NERR at Cat Point were taken from the NERR CDMO database. Samples labeled 'seabird' were from a Seabird SBE 19plus V2 at a 150-second sampling interval. Samples labeled dacs were taken from Florida Department of Agriculture and Consumer Services.

Processing Description

BCO-DMO Processing Notes:
- data submitted in Excel file "Apalachicola_Data_2013-2019_ABP_4.xlsx" sheet "WQ_Data" extracted to csv
- added conventional header with dataset name, PI name, version date
- modified parameter names to conform with BCO-DMO naming conventions
- replaced missing data 'NA' with 'nd'
- changed commas in the notes column to semicolons
- changed dacs to DACS (for Dept of Agriculture and Consumer Services)
- joined this table with sheet "Reef Location" table in order to include lat/lon info
- re-formatted date from m/d/yyyy to yyyy-mm-dd and added ISO_DateTime_UTC column
- re-ordered columns
- reduced digits of: do_mg_l, do_perc, ph (to 2 digits); temp_C, sal_ppt (1 digit)
- sorted rows by {reef_type}{estuary}{region}{distance}{reef}

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Related Publications

Hanley, T., White, J., Stallings, C., & Kimbro, D. (2019). Environmental gradients shape the combined effects of multiple parasites on oyster hosts in the northern Gulf of Mexico. Marine Ecology Progress Series, 612, 111–125. doi:10.3354/meps12849

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reef_typesubtidal or intertidal reef unitless
estuaryname of the estuary: Apalachicola or Ocholckonee unitless
regionarea in the bay: east; west; ocholckonee unitless
distancedistance from the river: zone 1 or 2 or 3. 1 is the closest and 3 is the furthest from freshwater input unitless
reef_nameName of the reefs in experiments (2013-2016) unitless
reefnumber of the reef; Cat indicates data from Apalachicola National Estuarian Research Reserve at Catpoint in Apalachicola Bay unitless
sample_typesample collected during: survey; experiment; dacs; seabird; spat; NERR unitless
Latlatitude; north is positive decimal degrees
Longlongitude; east is positive decimal degrees
TransectThe transect name. Used to help identify different sites unitless
date_localdate the sample was taken unitless
time_localtime the sample was taken; Eastern Standard Time (UTC-4) unitless
ISO_DateTime_UTCDate/Time (UTC) ISO formatted based on ISO 8601:2004E; formatted as YYYY-mm-ddTHH:MM:SSZ unitless
weekweek of year that sample was taken (1 to 53) unitless
yearyear in which sample was collected unitless
surf_botwhether the measurment was taken at the surface or the bottom unitless
do_mg_ldissolved oxygen milligrams/liter
do_percPercentage of dissolved oxygen unitless
temp_Ctemperature degrees Celsius
sal_pptsalinity parts per thousand
phpH unitless
sp_cond_us_cmspecific conductivity microSiemens/centimeter
notesFor DACS sampling in Ocholckonee Bay; the number in the notes column is the DACS station number unitless

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Dataset-specific Instrument Name
YSI Pro 2030
Generic Instrument Name
Water Quality Multiprobe
Dataset-specific Description
Used to measure dissolved oxygen, temperature, salinity and pH.
Generic Instrument Description
An instrument which measures multiple water quality parameters based on the sensor configuration.

Dataset-specific Instrument Name
Seabird SBE 19plus V2
Generic Instrument Name
CTD Sea-Bird SBE SEACAT 19plus
Dataset-specific Description
Used to measure conductivity, temperature, and pressure and with auxiliary sensors, measures dissolved oxygen, pH, turbidity, fluorescence, oil, PAR, nitrates, altimeter, etc.
Generic Instrument Description
Self contained self powered CTD profiler. Measures conductivity, temperature and pressure in both profiling (samples at 4 scans/sec) and moored (sample rates of once every 5 seconds to once every 9 hours) mode. Available in plastic or titanium housing with depth ranges of 600m and 7000m respectively. Minature submersible pump provides water to conductivity cell.

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Project Information

Collaborative Research: RAPID: Quantifying mechanisms by which Hurricane Michael facilitates a stable-state reversal on oyster reefs (Oyster Reef Reversal)

Coverage: Sub-tropic estuarine waters, subtidal and intertidal in Apalachicola Bay and Ocholckonee Bay

NSF Award Abstract:

Ecosystems can exhibit "tipping points" whereby an environmental disturbance pushes an ecosystem into an altered state from which it does not recover, even when the environment normalizes. This may have happened to valuable oyster reefs in Northwest Florida in 2012, when drought and low river flow allowed predators of oysters to flourish and consume nearly all the oysters. Despite subsequent years of normal rainfall and river flow, oysters have not recovered, suggesting the ecosystem may have crossed a tipping point. However, the timing and magnitude of the disturbance from Hurricane Michael (2018) may have pushed the ecosystem back towards its original, healthy state. In this project, investigators make field observations to gauge how predators and oysters are responding to Hurricane Michael and conduct lab experiments to test how predators and oysters respond to hurricane rainfall conditions. Additionally, they use mathematical models to predict whether effects observed in the field and lab could lead to a shift back past the tipping point. This is a rare opportunity to study how oyster ecosystems can shift back from altered to healthy states. However, a rapid response is essential before seasonal changes in the weather and bay obscure hurricane impacts. This research has several broader impacts. First, it will expand the ecological theory of tipping points. Second, it can support the management of the Apalachicola Bay oyster fishery, such as insight into the likely success of restoration efforts. The team coordinates with the Apalachicola National Estuarine Research Reserve to this end. Finally, research outputs are incorporated into ongoing public education and training efforts.

Ecosystems can rapidly shift from their original, high-value state to a new, degraded one. Such shifts have been observed in many ecosystems, but it is sometimes difficult to identify the mechanisms that mediate the shift beyond a "tipping point" and - to a greater extent - those that could mediate a shift back to the original state. Improving our understanding and predictive capability of tipping points depends on identifying the mechanisms that underlie bi-directional system shifts. In 2012, the oyster reefs of Apalachicola Bay, FL abruptly shifted into an oyster-less state when prolonged drought and low river flow allowed marine oyster predators to flourish. Despite subsequent years of normal rainfall and flow, there has not been a return shift, suggesting this ecosystem may have entered an alternate stable state. The hypothesis of this work is that in 2018 Hurricane Michael provided a sufficient disturbance to shift the system back into the attracting basin for its original state (prior observations support this prediction). This project couples field observations and lab experiments with population modeling to test whether and how Hurricane Michael initiated a reversal shift. A rapid response is essential before seasonal variability in this ecosystem obscures hurricane effects. The proposal's intellectual merit is based on its ability to address a central goal in ecology: identifying and predicting ecosystem tipping points. Combining empirical observations and models is a promising approach to advance this goal, but has not been widely applied in the field, mainly because researchers are not in place at the time of a shift. Hurricane Michael provides a unique opportunity to address this knowledge gap.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

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Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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