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Site Selection- From Hanley et. al 2019, this was a multi-step process that first involved using ArcGIS to partition the bay\u2019s oyster reefs (commercial and non-commercial) into six zones. Zone assignment was based on the reef\u2019s relative distance by water from the river input (near, mid, far) as well as a reef\u2019s east-west orientation to the river (East Apalachicola and West Apalachicola). Next, we randomly selected three reefs out of all possible reefs (including the experimental reefs) within each zone.<\/p>\n
Surveys- Methods for surveys done from 2013-2016 were taken from Hanley et al. 2019.<\/p>\n
Surveys 2013-2016-On each reef subtidal reef, we obtained spatially balanced samples by extending four 20 m transects at 90 degree angles from the boat. Along each transect, we overlaid a 0.25 m2\u00a0weighted quadrat at the 5, 10, 15, and 20 m marks. For each quadrat, we collected the entire contents of the quadrat into a uniquely labeled mesh bag, transported the bag to the surface, and placed the bag on ice to be processed at the lab. For intertidal reefs, we sampled 2 quadrats per reef, \u2018low\u2019 (located at the low water level) and \u2018high\u2019 (2 m above the low transect) quadrats centered along a 20 m transect on each reef.<\/p>\n
Surveys 2019- Sites were selected from previously sampled reefs. Subtidal surveys were conducted by divers on SCUBA. A buoy was dropped at the sites. The divers attached a 10m transect to the buoy and surveyed the area in the four cardinal directions (North, South, East and West). We characterized the substrate 0.5m on each side of the transect as mud, sand or shell hash, as well as quantified the amount of oyster shells and counted the number of Oyster Drills (Stramonita haemastoma). If there were oysters or shells at meter 5 or meter 10 along the transect then everything in a 0.25m2 quadrat was collected and processed at the lab. We only sampled the intertidal sites in December 2019. We laid a transect across the crest of the reef and then divided the length of the transect by 7 to get a consistent sampling interval. At each sampling interval we recorded the width of the sampling side and then placed a 0.0625m2 quadrat at the midpoint of the sampling width and collected all the contents to be brought back to the lab and processed.<\/p><\/div>","@type":"rdf:HTML"}],"http:\/\/ocean-data.org\/schema\/hasBriefDescription":[{"@value":"Survey totals","@language":"en-US"}],"http:\/\/purl.org\/dc\/terms\/description":[{"@value":"
Surveys of inhabitants on the intertidal and subtidal oyster reef in Apalachicola Bay and Ocholckonee Bay, Florida, 2013-2019. This data includes the total numbers of adults, spat, live oysters, new and old gapers, and whether mussels,\u00a0barnacles crabs, or gastropods were present.<\/p><\/div>","@type":"rdf:HTML"}],"http:\/\/www.w3.org\/2000\/01\/rdf-schema#label":[{"@value":"Oyster reef survey totals","@type":"xsd:string"}],"http:\/\/ocean-data.org\/schema\/hasProcessingDescription":[{"@value":"
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This data includes the total numbers of adults, spat, live oysters, new and old gapers, and whether mussels, barnacles crabs, or gastropods were present.","@language":"en-US"}],"http:\/\/purl.org\/dc\/terms\/rights":[{"@id":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"http:\/\/ocean-data.org\/schema\/deprecated":[{"@value":"false","@type":"xsd:boolean"}],"http:\/\/ocean-data.org\/schema\/temporalExtent":[{"@value":"_:temporalExtent821071"}],"http:\/\/ocean-data.org\/schema\/spatialCoverage":[{"@value":"_:spatialCoverage821071"}],"http:\/\/purl.org\/dc\/terms\/bibliographicCitation":[{"@value":"Kimbro, D. L., Stallings, C. D., White, J. W. (2020) Surveys of inhabitants on the intertidal and subtidal oyster reef in Apalachicola Bay and Ocholckonee Bay, FL, 2013-2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). 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\n- data submitted in Excel file \"Apalachicola_Data_2013-2019_ABP_4.xlsx\" sheet \"Survey.totals\" extracted to csv
\n- added conventional header with dataset name, PI name, version date
\n- modified parameter names to conform with BCO-DMO naming conventions
\n- replaced missing data 'NA'\u00a0 and 'not entered in origiNAl data'\u00a0with 'nd'
\n- changed commas in the notes columns to semicolons
\n- joined this table with sheet \"Reef Location\" table in order to include lat\/lon info
\n- re-formatted 'harvest_date' and 'process_date'\u00a0from m\/d\/yyyy to yyyy-mm-dd
\n- re-ordered columns
\n- sorted rows by\u00a0{reef_type}{estuary}{region}{distance}{harvest_date}{reef_name}{reef}{transect}{quadrat}<\/p>\n