http://lod.bco-dmo.org/id/dataset/826193
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2020-10-07
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Fish abundance and foraging rates by family from point surveys within and outside of canopies at Lameshur Bay, St John, USVI, Feb- Mar 2016
2020-10-07
publication
2020-10-07
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2020-10-14
publication
https://doi.org/10.26008/1912/bco-dmo.826193.1
Peter J. Edmunds
California State University Northridge
principalInvestigator
Georgios Tsounis
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Edmunds, P. J., Tsounis, G. (2020) Fish abundance and foraging rates by family from point surveys within and outside of canopies at Lameshur Bay, St John, USVI, Feb- Mar 2016. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-10-07 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.826193.1 [access date]
Fish abundance: canopy effect fish assemblage Dataset Description: <p>Fish abundance and foraging rates by family from point surveys within and outside of canopies at three sites at Lameshur Bay, St John, USVI: East Cabritte, Europa Bay, and East Tektite, in February and March 2016.</p>
<p>These data were used to test hypothesis 1&nbsp;in Tsounis et al. Coral Reefs (2020): the role of habitat complexity in distinguishing between octocoral and scleractinian recruitment niches.Tables 1,2; Figure 3; Appendix 2</p>
<p>These data are a continuation of BCO-DMO project 562086 (http://www.bco-dmo.org/project/562086) and BCO-DMO project 752508 (https://www.bco-dmo.org/project/752508).</p> Methods and Sampling: <p>The data presented in this file have been published in: Tsounis, G., Steele, M. A., &amp; Edmunds, P. J. Elevated feeding rates of fishes within octocoral canopies on Caribbean reefs.Coral Reefs (2020) 39:1299-1311, doi: 10.1007/s00338-020-01963-1.</p>
<p>Surveys were conducted at octocoral communities in St John, US Virgin Islands, in February and March 2016.&nbsp;Building on our previous studies on the environmental impact of octocoral community structure (Tsounis and Edmunds 2017; Tsounis et al. 2018), the present study was conducted at East Cabritte, Europa Bay, and East Tektite, within the Virgin Islands National Park, along the south shore of St. John.</p>
<p>Hypothesis (1) was tested: Fish abundance and their feeding rates are higher within the canopy of dense octocoral communities than outside, as a result of octocorals providing visual cover.</p>
<p>Methods: Point census surveys in 1 x 2 m quadrats placed within canopies and outside of canopies were used to quantify the abundances of fishes by family, and in these quadrats the foraging rates of fishes were estimated from the rate at which they took bites from benthic surfaces. An L-shaped PVC frame (1 x 2 m, hereafter referred to as “quadrat”) was placed haphazardly on the reef at each site, and then the observer retreated 5-7 m away and let 2-3 minutes pass to allow fishes to acclimate to the presence of the PVC frame. Each quadrat was observed for 5 min, during which the total number of bites on benthic surfaces by fishes (pooled among taxa) was counted. Quadrats in which fish reacted to the presence of the observer, for example, by seeking refuge in response to the diver, were excluded from the data.</p>
<p>Locations within each of the three sites were defined as within canopy ("in") if at least two large octocoral colonies were present in the quadrat. Where this criterion was not met, the area was categorized as outside of canopy ("out"). "Large colonies" were defined by the estimated mean height of arborescent octocorals at each site, and thus differed among sites. Large colonies were &gt; 20 cm tall at Europa Bay and East Tektite, and&nbsp; &gt; 30 cm tall at East Cabritte.&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1332915 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1332915
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1756381 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1756381
completed
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
Georgios Tsounis
California State University Northridge
18111 Nordhoff Street
Northridge
CA
91330-8303
georgios.tsounis@csun.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
site
lat
lon
canopy
Pomacathidae
Chaetodontidae
Blennioide_Gobiidae
Ostraciidae
Pomacentridae
Serranidae
Carangidae
Scaridae
Scorpaenidae
Acanthuridae
Lutjanidae
Holocentridae
Autostomidae
Labridae
Other_fish
Bites_min
total_fish
theme
None, User defined
site
latitude
longitude
count
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative research: Ecology and functional biology of octocoral communities
http://coralreefs.csun.edu/
Collaborative research: Ecology and functional biology of octocoral communities
<p>The recent past has not been good for coral reefs, and journals have been filled with examples of declining coral cover, crashing fish populations, rising cover of macroalgae, and a future potentially filled with slime. However, reefs are more than the corals and fishes for which they are known best, and their biodiversity is affected strongly by other groups of organisms. The non-coral fauna of reefs is being neglected in the rush to evaluate the loss of corals and fishes, and this project will add on to an on-going long term ecological study by studying soft corals. This project will be focused on the ecology of soft corals on reefs in St. John, USVI to understand the Past, Present and the Future community structure of soft corals in a changing world. For the Past, the principal investigators will complete a retrospective analysis of octocoral abundance in St. John between 1992 and the present, as well as Caribbean-wide since the 1960's. For the Present, they will: (i) evaluate spatio-temporal changes between soft corals and corals, (ii) test for the role of competition with macroalgae and between soft corals and corals as processes driving the rising abundance of soft corals, and (iii) explore the role of soft corals as "animal forests" in modifying physical conditions beneath their canopy, thereby modulating recruitment dynamics. For the Future the project will conduct demographic analyses on key soft corals to evaluate annual variation in population processes and project populations into a future impacted by global climate change.</p>
<p>This project was funded to provide and independent "overlay" to the ongoing LTREB award (DEB-1350146, co-funded by OCE, PI Edmunds) focused on the long-term dynamics of coral reefs in St. John.</p>
<p>Note: This project is closely associated with the project "RAPID: Resilience of Caribbean octocorals following Hurricanes Irma and Maria". See: <a href="https://www.bco-dmo.org/project/749653">https://www.bco-dmo.org/project/749653</a>.</p>
<p><strong>The following publications and data resulted from this project:</strong><br />
2017 Tsounis, G., and P. J. Edmunds. Three decades of coral reef community dynamics in St. John, USVI: a contrast of scleractinians and octocorals. Ecosphere 8(1):e01646. DOI: <a href="http://dx.doi.org/10.1002/ecs2.1646" target="_blank" title="Link to external resource: 10.1002/ecs2.1646">10.1002/ecs2.1646</a><br />
<a href="https://www.bco-dmo.org/dataset/664254" target="_blank">Rainfall and temperature data</a><br />
<a href="https://www.bco-dmo.org/dataset/664223" target="_blank">Coral and macroalgae abundance and distribution</a><br />
<a href="https://www.bco-dmo.org/dataset/664267" target="_blank">Descriptions of hurricanes affecting St. John</a></p>
<p>2016 Gambrel, B. and Lasker, H.R. Marine Ecology Progress Series 546: 85–95, DOI: <a href="http://www.int-res.com/abstracts/meps/v546/p85-95/" target="_blank">10.3354/meps11670</a><br />
<a href="https://www.bco-dmo.org/dataset/662664" target="_blank">Colony to colony interactions</a><br />
<a href="https://www.bco-dmo.org/dataset/662377" target="_blank">Eunicea</a><a href="https://www.bco-dmo.org/dataset/662377" target="_blank"> </a><a href="https://www.bco-dmo.org/dataset/662377" target="_blank">flexuosa interactions</a><br />
<a href="http://Gorgonia ventalina asymmetry">Gorgonia </a><a href="https://www.bco-dmo.org/dataset/662645" target="_blank">ventalina</a><a href="https://www.bco-dmo.org/dataset/662645"> asymmetry</a><br />
<a href="https://www.bco-dmo.org/dataset/662791" target="_blank">Nearest neighbor surveys</a></p>
<p>2015 Lenz EA, Bramanti L, Lasker HR, Edmunds PJ. Long-term variation of octocoral populations in St. John, US Virgin Islands. Coral Reefs DOI <a href="http://dx.doi.org/10.1007/s00338-015-1315-x" target="_blank">10.1007/s00338-015-1315-x</a><br />
<a href="http://www.bco-dmo.org/dataset/562570" target="_blank">octocoral survey - densities</a><br />
<a href="http://www.bco-dmo.org/dataset/562595" target="_blank">octocoral counts - photoquadrats vs. insitu survey</a><br />
<a href="http://www.bco-dmo.org/dataset/562618" target="_blank">octocoral literature review</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/St_John_LTREB/octocorals/Lenzetal_CR_MetaDataSTJ2015_BCODMO_2015-07-15.xls">Download complete data for this publication (Excel file)</a></p>
<p>2015 Privitera-Johnson, K., et al., Density-associated recruitment in octocoral communities in St. John, US Virgin Islands, J.Exp. Mar. Biol. Ecol. DOI: <a href="http://dx.doi.org/10.1016/j.jembe.2015.08.006" target="_blank">10.1016/j.jembe.2015.08.006</a><br />
<a href="http://www.bco-dmo.org/dataset/565056" target="_blank">octocoral density dependence</a><br />
<a href="http://dmoserv3.whoi.edu/data_docs/St_John_LTREB/octocorals/MetaData_KPJetal_JEMBE2015_STJ_Octocorals.xlsx">Download complete data for this publication (Excel file)</a></p>
<p>Other datasets related to this project:<br />
<a href="https://www.bco-dmo.org/dataset/682966" target="_blank">octocoral transects - adult colony height</a></p>
VI Octocorals
largerWorkCitation
project
Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals
https://osprey.bco-dmo.org/project/752508
Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals
<p><em>NSF Award Abstract:</em><br />
Coral reefs are exposed to a diversity of natural and anthropogenic disturbances, and the consequences for ecosystem degradation have been widely publicized. However, the reported changes have been biased towards fishes and stony corals, and for Caribbean reefs, the most notable example of this bias are octocorals ("soft corals"). Although they are abundant and dominate many Caribbean reefs, they are rarely included in studies due to the difficulty of both identifying them and in quantifying their abundances. In some places there is compelling evidence that soft corals have increased in abundance, even while stony corals have become less common. This suggests that soft corals are more resilient than stony corals to the wide diversity of disturbances that have been impacting coral corals. The best coral reefs on which to study these changes are those that have been studied for decades and can provide a decadal context to more recent events, and in this regard the reefs of St. John, US Virgin Islands are unique. Stony corals on the reefs have been studied since 1987, and the soft corals from 2014. This provides unrivalled platform to evaluate patterns of octocoral abundance and recruitment; identify the patterns of change that are occurring on these reefs, and identify the processes responsible for the resilience of octocoral populations. The project will extend soft coral monitoring from 4 years to 8 years, and within this framework will examine the roles of baby corals, and their response to seafloor roughness, seawater flow, and seaweed, in determining the success of soft corals. The work will also assess whether the destructive effects of Hurricanes Irma and Maria have modified the pattern of change. In concert with these efforts the project will be closely integrated with local high schools at which the investigators will host marine biology clubs and provide independent study opportunities for their students and teachers. Unique training opportunities will be provided to undergraduate and graduate students, as well as a postdoctoral researcher, all of whom will study and work in St. John, and the investigators will train coral reef researchers to identify the species of soft corals through a hands-on workshop to be conducted in the Florida Keys.</p>
<p>Understanding how changing environmental conditions will affect the community structure of major biomes is the ecological objective defining the 21st century. The holistic effects of these conditions on coral reefs will be studied on shallow reefs within the Virgin Islands National Park in St. John, US Virgin Islands, which is the site of one of the longest-running, long-term studies of coral reef community dynamics in the region. With NSF-LTREB support, the investigators have been studying long-term changes in stony coral communities in this location since 1987, and in 2014 NSF-OCE support was used to build an octocoral "overlay" to this decadal perspective. The present project extends from this unique history, which has been punctuated by the effects of Hurricanes Irma and Maria, to place octocoral synecology in a decadal context, and the investigators exploit a rich suite of legacy data to better understand the present and immediate future of Caribbean coral reefs. This four-year project will advance on two concurrent fronts: first, to extend time-series analyses of octocoral communities from four to eight years to characterize the pattern and pace of change in community structure, and second, to conduct a program of hypothesis-driven experiments focused on octocoral settlement that will uncover the mechanisms allowing octocorals to more effectively colonize substrata than scleractinian corals on present day reefs. Specifically, the investigators will conduct mensurative and manipulative experiments addressing four hypotheses focusing on the roles of: (1) habitat complexity in distinguishing between octocoral and scleractinian recruitment niches, (2) the recruitment niche in mediating post-settlement success, (3) competition in algal turf and macroalgae in determining the success of octocoral and scleractian recruits, and (4) role of octocoral canopies in modulating the flux of particles and larvae to the seafloor beneath. The results of this study will be integrated to evaluate the factors driving higher ecological resilience of octocorals versus scleractinians on present-day Caribbean reefs.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Octocoral Community Dynamics
largerWorkCitation
project
eng; USA
biota
oceans
-64.7299
-64.7188
18.3092
18.3167
2016-02-01
2016-03-31
From projects that focused on the following 2 locations: 1. St. John, US Virgin Islands: 18.3185, 64.7242 2. St. John, US Virgin Islands
0
BCO-DMO catalogue of parameters from Fish abundance and foraging rates by family from point surveys within and outside of canopies at Lameshur Bay, St John, USVI, Feb- Mar 2016
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/826318.rdf
Name: site
Units: unitless
Description: <p>site identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/826319.rdf
Name: lat
Units: decimal degrees
Description: <p>latitude; north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/826320.rdf
Name: lon
Units: decimal degrees
Description: <p>longitude; east is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/826321.rdf
Name: canopy
Units: unitless
Description: <p>Locations within each of the three sites were defined as within canopy ("in") if at least two large octocoral colonies were present in the quadrat. Where this criterion was not met the area was categorized as outside of canopy ("out").</p>
http://lod.bco-dmo.org/id/dataset-parameter/826322.rdf
Name: Pomacathidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Pomacathidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826323.rdf
Name: Chaetodontidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Chaetodontidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826324.rdf
Name: Blennioide_Gobiidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Blennioide/Gobiidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826325.rdf
Name: Ostraciidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Ostraciidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826326.rdf
Name: Pomacentridae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Pomacentridae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826327.rdf
Name: Serranidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Serranidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826328.rdf
Name: Carangidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Carangidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826329.rdf
Name: Scaridae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Scaridae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826330.rdf
Name: Scorpaenidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Scorpaenidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826331.rdf
Name: Acanthuridae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Acanthuridae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826332.rdf
Name: Lutjanidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Lutjanidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826333.rdf
Name: Holocentridae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Holocentridae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826334.rdf
Name: Autostomidae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Autostomidae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826335.rdf
Name: Labridae
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Labridae fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826336.rdf
Name: Other_fish
Units: bites/5 minutes
Description: <p>Number of bites in 5 minutes on benthic surfaces by Other fish</p>
http://lod.bco-dmo.org/id/dataset-parameter/826337.rdf
Name: Bites_min
Units: bites/minute
Description: <p>Overall Number of grazing contacts (bites) on the benthos for all fish present in the 2x1m quadrat during the 5th observation minute. If the same fish entered the quadrat repeatedly they were scored as one individual</p>
http://lod.bco-dmo.org/id/dataset-parameter/826338.rdf
Name: total_fish
Units: bites/5 minutes
Description: <p>sum of all fish bites in the 5-minute observation perios</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
7035
https://darchive.mblwhoilibrary.org/bitstream/1912/26307/1/dataset-826193_fish-abundance-canopy-effect-fish-assemblage__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.826193.1
download
onLine
dataset
<p>The data presented in this file have been published in: Tsounis, G., Steele, M. A., &amp; Edmunds, P. J. Elevated feeding rates of fishes within octocoral canopies on Caribbean reefs.Coral Reefs (2020) 39:1299-1311, doi: 10.1007/s00338-020-01963-1.</p>
<p>Surveys were conducted at octocoral communities in St John, US Virgin Islands, in February and March 2016.&nbsp;Building on our previous studies on the environmental impact of octocoral community structure (Tsounis and Edmunds 2017; Tsounis et al. 2018), the present study was conducted at East Cabritte, Europa Bay, and East Tektite, within the Virgin Islands National Park, along the south shore of St. John.</p>
<p>Hypothesis (1) was tested: Fish abundance and their feeding rates are higher within the canopy of dense octocoral communities than outside, as a result of octocorals providing visual cover.</p>
<p>Methods: Point census surveys in 1 x 2 m quadrats placed within canopies and outside of canopies were used to quantify the abundances of fishes by family, and in these quadrats the foraging rates of fishes were estimated from the rate at which they took bites from benthic surfaces. An L-shaped PVC frame (1 x 2 m, hereafter referred to as “quadrat”) was placed haphazardly on the reef at each site, and then the observer retreated 5-7 m away and let 2-3 minutes pass to allow fishes to acclimate to the presence of the PVC frame. Each quadrat was observed for 5 min, during which the total number of bites on benthic surfaces by fishes (pooled among taxa) was counted. Quadrats in which fish reacted to the presence of the observer, for example, by seeking refuge in response to the diver, were excluded from the data.</p>
<p>Locations within each of the three sites were defined as within canopy ("in") if at least two large octocoral colonies were present in the quadrat. Where this criterion was not met, the area was categorized as outside of canopy ("out"). "Large colonies" were defined by the estimated mean height of arborescent octocorals at each site, and thus differed among sites. Large colonies were &gt; 20 cm tall at Europa Bay and East Tektite, and&nbsp; &gt; 30 cm tall at East Cabritte.&nbsp;</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Notes:</strong><br />
-&nbsp;data submitted in Excel file "Tsounis 2020 data archive.xls" sheet "Canopy effect fish assemblage" extracted to csv<br />
- added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions<br />
- joined lat/lon coordinates from <a href="https://www.bco-dmo.org/dataset/765328">dataset&nbsp;765328</a>: ( formerly&nbsp;<a href="http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Octocoral_Community_Dynamics/adult_surveys.html0">http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Octocoral_Community_Dynamics/adult_surveys.html0</a>&nbsp;)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact