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An axenic Thalassiosira pseudonana 1335 culture (National Center for Marine Algae) was grown in 500 ml of L1 +Si medium[1] in a 600 ml vented tissue culture flask at 18 \u00b0C under 16 h light at 160 \u00b5mol photons\/m^2\/s and 8 h dark. After the diatom cultures had been growing for 7 d, bacteria pre-grown in 1\/2 YTSS medium at 30 \u00b0C (Ruegeria pomeroyi DSS-3 (treatment A) and Stenotrophomonas sp. SKA14 (treatment D)) or 1\/10 YTSS medium at 25 \u00b0C (Polaribacter dokdonensis (treatment E)) were washed 5 times in sterile L1 medium and inoculated into the diatom cultures and glucose controls at ~10^6 (Stenotrophomonas sp. and P. dokdonensis) or ~10^7 (R. pomeroyi) cells\/ml. 3 or 4 replicates were collected for each co-culture. Axenic T. pseudonana and unamended L1+Si medium were maintained and sampled alongside the co-cultures as controls (treatment X and C). Samples were collected after 48 h.<\/p>\n
Microbial cells were removed from co-cultures by filtration through 0.2 \u00b5m pore-size filters at 8 h, 24 h, and 49 h after bacterial inoculation. Uninoculated medium served as the blank. Metabolites were derivatized with benzoyl chloride (Widner et al. in prep), extracted using a solid phase resin (Agilent, Bond Elut PPL), and analyzed using ultra high performance liquid chromatography coupled with electrospray ionization and tandem mass spectrometry (UHPLC-ESI-MSMS).<\/p>\n
Data were processed using Skyline (Pino et al. 2017, Henderson et al. 2018) and MATLAB.<\/p><\/div>","@type":"rdf:HTML"}],"http:\/\/ocean-data.org\/schema\/hasBriefDescription":[{"@value":"MetaboLights accessions: MS samples","@language":"en-US"}],"http:\/\/purl.org\/dc\/terms\/description":[{"@value":"
The study examined the ability of bacteria to draw down exometabolites from the culture medium as detected by novel approaches in mass spectrometry (MS). See related dataset on parallel experiments using nuclear magnetic resonance (NMR) analysis.This dataset includes information about samples and treatments analyzed with MS. Bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152 were collected 8, 24, and 49\u00a0hours after individual inoculation into a diatom Thalassiosira psuedonana culture and resulting metabolites were analyzed.<\/p>\n
Raw data files are located at Metabolights, MetaboLights accession number MTBLS1751: BCO-DMO Processing Notes:<\/strong>
https:\/\/www.ebi.ac.uk\/metabolights\/MTBLS1751\/files<\/a>
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\n- data submitted in Excel file \"MTBLS1751\u00a0for BCODMO.xlsx\" sheet \"Sheet1\" extracted to csv
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Bacteria Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152 were collected 8, 24, and 49 hours after individual inoculation into a diatom Thalassiosira psuedonana culture and resulting metabolites were analyzed. Raw data files are located at Metabolights, MetaboLights accession number MTBLS1751.","@language":"en-US"}],"http:\/\/purl.org\/dc\/terms\/rights":[{"@id":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"http:\/\/ocean-data.org\/schema\/deprecated":[{"@value":"false","@type":"xsd:boolean"}],"http:\/\/ocean-data.org\/schema\/temporalExtent":[{"@value":"_:temporalExtent826670"}],"http:\/\/purl.org\/dc\/terms\/bibliographicCitation":[{"@value":"Kujawinski, E. (2020) Sample and treatment information from mass spectrometry assays of metabolite experiments on Thalassiosira pseudonanna 1335 inoculated with three bacterial strains. Biological and Chemical Oceanography Data Management Office (BCO-DMO). 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