http://lod.bco-dmo.org/id/dataset/835593
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-01-07
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019.
2021-08-23
publication
2021-08-23
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-08-23
publication
https://doi.org/10.26008/1912/bco-dmo.835593.1
Steven W. Wilhelm
University of Tennessee Knoxville
principalInvestigator
Gary LeCleir
University of Tennessee
principalInvestigator
Matthew Sullivan
Ohio State University
principalInvestigator
Joshua Weitz
Georgia Institute of Technology
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Wilhelm, S. W., LeCleir, G., Sullivan, M., Weitz, J. (2021) CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-08-23 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.835593.1 [access date]
AE1926 CTD profiles Dataset Description: Methods and Sampling: <p>CTD casts were performed using the ships CTD rosette every 4 hours to survey the water column down to a depth of 500 meters.&nbsp;</p>
<p>The CTD used for this study had redundant/ replicate sensors for measuring many of the&nbsp;parameters.<br />
<br />
&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1829636 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1829636
completed
Steven W. Wilhelm
University of Tennessee Knoxville
865-974-0665
1499 Circle Dr Room 637
Knoxville
TN
37996
USA
wilhelm@utk.edu
pointOfContact
Gary LeCleir
University of Tennessee
Knoxville
TX
37996
USA
pointOfContact
Matthew Sullivan
Ohio State University
614-247-1616
496 W 12th Ave Riffe Building
Columbus
OH
43210
USA
sullivan.948@osu.edu
pointOfContact
Joshua Weitz
Georgia Institute of Technology
404-894-3700
310 Ferst Dr.
Atlanta
GA
30332
USA
jsweitz@gatech.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Cast_ID
ISO_DateTime_UTC
CStarTr0
Conductivity_0
Conductivity_1
Density_1
Density_2
Depth
Descent_Rate
Fluoresence_1
Fluoresence_2
Latitude
Longitude
Oxygen_Raw_1
Oxygen_Raw_2
Oxygen_1
Oxygen_2
Pressure
Salinity_1
Salinity_2
Temperature_ITS_1
Temperature_IPTS_1
Temperature_ITS_2
Temperature_IPTS_2
CStarAt0
Seabird SBE 9plus
SPAR
theme
None, User defined
cast
ISO_DateTime_UTC
transmission
conductivity
density
depth
descent_rate
fluorescence
latitude
longitude
Oxygen in volts
dissolved Oxygen
water pressure
salinity
water temperature at measurement depth
water temperature (IPTS-68 standard)
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird
LI-COR Biospherical PAR Sensor
instrument
BCO-DMO Standard Instruments
AE1926
service
Deployment Activity
Bermuda Atlantic
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses
https://osprey.bco-dmo.org/project/775816
Collaborative Research: Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses
<p><em>NSF Award Abstract:</em><br />
Viral infections of marine microbes can transform the fate of microbial populations that fuel global ocean biogeochemical cycles. For example, viral infections of microbes lead to the release of carbon and nutrients back into the environment. This regeneration of carbon and nutrients stimulates the activity of other microbes and diverts carbon and nutrients from larger organisms in marine food webs. Because virus-microbe infections are relatively specific, it is critical to identify those pairs of viruses and microbes that may disproportionally contribute to the turnover of carbon and nutrients in the ocean. This project will develop quantitative approaches and tools to quantify which viruses infect which microbes and to use these data to quantify how viral infections of microbes collectively shape nutrient and carbon cycles in the North Atlantic Ocean. The project will analyze virus-microbe interactions in mesocosms at the Bigelow Laboratory for Ocean Sciences in mid-coast Maine and during open ocean expeditions to the Bermuda Atlantic Time-Series Study (BATS) site. An interdisciplinary team will leverage recent advances in molecular biology, computational biology, and mathematical modeling to identify virus-host partners and their impact on the movement of elements through marine systems. This project will support three graduate students, six undergraduate students and one postdoctoral researcher in an interdisciplinary context. Research advances will be translated into reproducible software methods to be disseminated via the community cyberinfrastructure platform iVirus, with additional training materials presented as part of a viral methods and informatics workshop held at The Ohio State University. The translation of discoveries to the public will be furthered by the involvement of journalism undergraduate students at the University of Tennessee-Knoxville.</p>
<p>This project builds upon advances in the molecular toolkit of viromics to develop an integrated approach to characterize lineage-specific rates of infection, lysis, and nutrient release induced by marine viruses in open ocean ecosystems. It will combine theory, in vitro experiments, and in situ sampling to (i) extend a robust inference method for estimating virus-microbe cross-infection networks from time-series data; (ii) establish and characterize in-vitro protocols for inferring cross-infectivity in complex communities using culture-independent methods; (iii) estimate lineage-specific rates of lysis and regeneration of nutrients in marine systems, including applications to coastal and open ocean ecosystems. Project aims focus on quantifying the extent to which virus-induced lysis and regeneration of carbon and nutrients is heterogeneously distributed across microbial populations. To do so, the project will incorporate time series measurements of abundance information (via metagenomes) and activity information (via metatranscriptomes). In so doing, it will advance efforts to understand community-scale interactions rather than those amongst a single virus-host pair. Theoretical methods and in vitro protocols will directly infer lineage-specific infection, lysis, and nutrient release rates in coastal- and open-ocean ecosystems in the North Atlantic Ocean. Results will be used to identify key links that disproportionately influence bulk nutrient release. A novel PCR-based approach will augment and validate the core inference approach. Overall, the project aims to enhance our understanding of how viruses contribute to marine ecosystem function.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
InVirT
largerWorkCitation
project
eng; USA
oceans
Bermuda Atlantic
-64.38645
0.4904
0.0147
31.827679
2019-10-12
2019-10-17
Bermuda Atlantic Time Series
0
BCO-DMO catalogue of parameters from CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/836027.rdf
Name: Cast_ID
Units: unitless
Description: <p>ID of the CTD cast</p>
http://lod.bco-dmo.org/id/dataset-parameter/836028.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>Start time of CTD cast in ISO format (yyyy-mm-ddThh-dd-tt) in UTC timezone.</p>
http://lod.bco-dmo.org/id/dataset-parameter/836029.rdf
Name: CStarTr0
Units: percentage (%)
Description: <p>Beam Transmission</p>
http://lod.bco-dmo.org/id/dataset-parameter/836030.rdf
Name: Conductivity_0
Units: siemens per meters (S/m)
Description: <p>Conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/836031.rdf
Name: Conductivity_1
Units: siemens per meters (S/m)
Description: <p>Conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/836032.rdf
Name: Density_1
Units: kilograms per cubic meters (kg/m^3)
Description: <p>Density</p>
http://lod.bco-dmo.org/id/dataset-parameter/836033.rdf
Name: Density_2
Units: kilograms per cubic meters (kg/m^3)
Description: <p>Density</p>
http://lod.bco-dmo.org/id/dataset-parameter/836034.rdf
Name: Depth
Units: meters (m)
Description: <p>Depth</p>
http://lod.bco-dmo.org/id/dataset-parameter/836035.rdf
Name: Descent_Rate
Units: meters per seconds (m/s)
Description: <p>Descent Rate</p>
http://lod.bco-dmo.org/id/dataset-parameter/836036.rdf
Name: Fluoresence_1
Units: micrograms per liters (ug/l)
Description: <p>Fluoresence, Chelsea Aqua 3 Chl Con</p>
http://lod.bco-dmo.org/id/dataset-parameter/836037.rdf
Name: Fluoresence_2
Units: miligrams per cubic meters (mg/m^3)
Description: <p>Fluorescence, WET Labs ECO-AFL/FL</p>
http://lod.bco-dmo.org/id/dataset-parameter/836038.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude, south is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/836039.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude, west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/836040.rdf
Name: Oxygen_Raw_1
Units: Volts (V)
Description: <p>Raw oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/836041.rdf
Name: Oxygen_Raw_2
Units: Volts (V)
Description: <p>Raw oxygen, 2</p>
http://lod.bco-dmo.org/id/dataset-parameter/836042.rdf
Name: Oxygen_1
Units: milligrams per liters (mg/l)
Description: <p>Oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/836043.rdf
Name: Oxygen_2
Units: milligrams per liters (mg/l)
Description: <p>Oxygen, 2</p>
http://lod.bco-dmo.org/id/dataset-parameter/836045.rdf
Name: Pressure
Units: dB
Description: <p>Pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/836046.rdf
Name: Salinity_1
Units: PSU
Description: <p>Practical salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/836047.rdf
Name: Salinity_2
Units: PSU
Description: <p>Practical salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/836049.rdf
Name: Temperature_ITS_1
Units: degrees Celsius (°C), International Temperature Scale - 1990
Description: <p>Water temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/836050.rdf
Name: Temperature_IPTS_1
Units: degrees Celsius (°C)
Description: <p>Water temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/836051.rdf
Name: Temperature_ITS_2
Units: degrees Celsius (°C), International Temperature Scale - 1990
Description: <p>Water temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/836052.rdf
Name: Temperature_IPTS_2
Units: degrees Celsius (°C)
Description: <p>Water temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/859395.rdf
Name: CStarAt0
Units: percentage (%)
Description: <p>Beam Transmission</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
6125824
https://darchive.mblwhoilibrary.org/bitstream/1912/27464/1/dataset-835593_ctd-profile-casts__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.835593.1
download
onLine
dataset
<p>CTD casts were performed using the ships CTD rosette every 4 hours to survey the water column down to a depth of 500 meters.&nbsp;</p>
<p>The CTD used for this study had redundant/ replicate sensors for measuring many of the&nbsp;parameters.<br />
<br />
&nbsp;</p>
Specified by the Principal Investigator(s)
<p>The data is converted from its raw form using the “convert” program in the SBEDataProcessing software. The data then got binned based on depth with a bin size of 1 using the “Bin Average” program within the same software suite. BCO-DMO processing notes: * Did not serve cast InVirTC1 (test cast) * Removed PAR and SPAR columns due to uncertain values * Renamed fields to comply with database requirements * Joined CTD files with dates</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Seabird SBE 9plus
Seabird SBE 9plus
PI Supplied Instrument Name: Seabird SBE 9plus PI Supplied Instrument Description:Seabird SBE 9plus Instrument Name: CTD Sea-Bird Instrument Short Name:CTD Sea-Bird Instrument Description: A Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics. This instrument designation is used when specific make and model are not known or when a more specific term is not available in the BCO-DMO vocabulary. Refer to the dataset-specific metadata for more information about the specific CTD used. More information from: http://www.seabird.com/ Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
SPAR
SPAR
PI Supplied Instrument Name: SPAR PI Supplied Instrument Description:Surface PAR sensor. The SPAR sensor is typically mounted on the ship and does not submerge with the CTD. Instrument Name: LI-COR Biospherical PAR Sensor Instrument Short Name:LI-COR Biospherical PAR Instrument Description: The LI-COR Biospherical PAR Sensor is used to measure Photosynthetically Available Radiation (PAR) in the water column. This instrument designation is used when specific make and model are not known. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0074/
Cruise: AE1926
AE1926
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel
AE1926
Steven W. Wilhelm
University of Tennessee Knoxville
R/V Atlantic Explorer
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantic Explorer
vessel