http://lod.bco-dmo.org/id/dataset/840941
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-02-17
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Coral pulse amplitude modulation (PAM) throughout a heat temperature study conducted in aquaria at Brewer’s Bay, St. Thomas, The U.S. Virgin Islands in June of 2017
2021-02-17
publication
2021-02-17
revision
BCO-DMO Linked Data URI
2021-02-17
creation
http://lod.bco-dmo.org/id/dataset/840941
Laura Mydlarz
University of Texas at Arlington
principalInvestigator
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Mydlarz, L., Brandt, M. (2021) Coral pulse amplitude modulation (PAM) throughout a heat temperature study conducted in aquaria at Brewer’s Bay, St. Thomas, The U.S. Virgin Islands in June of 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-02-17 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/840941 [access date]
Methods and Sampling: <p>Location:&nbsp;Brewer’s Bay (18.34403, -64.98435), St. Thomas, The U.S. Virgin Islands<br />
<br />
PAM recorded twice a day in the mid morning and mid afternoon.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1712134 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1712134
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1712240 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1712240
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1712540 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1712540
onGoing
Laura Mydlarz
University of Texas at Arlington
817-272-0397
501 S. Nedderman Dr. 337 Life Sciences Building
Arlington
TX
76013
United States
mydlarz@uta.edu
pointOfContact
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
340-693-1379
2 John Brewers Bay
St. Thomas, USVI
00802
mbrandt@uvi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
BUCKET
SPECIES
CORE
DATE
TIME
MEMORY
PULSE
Fv
Fm
Yield
ETR
PAR
TEMP
TREATMENT
ISO_DateTime_UTC
Diving Pulse amplitude modulation (Diving PAM)
theme
None, User defined
tank
species scientific name (binomial)
core id
date_local
time_local
sample description
fluorescence
Fv to Fm ratio
Electron Transport Rate (ETR)
No BCO-DMO term
water temperature at measurement depth
treatment
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
Fluorometer
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Immunity to Community: Can Quantifying Immune Traits Inform Reef Community Structure?
https://osprey.bco-dmo.org/project/727496
Immunity to Community: Can Quantifying Immune Traits Inform Reef Community Structure?
<p>NSF abstract:</p>
<p>Coral diseases have increased significantly throughout the past 30 years. Climate change and other detrimental environment factors are likely to blame. Unhealthy coral reefs cannot support the fish and other life that make the reef a vibrant and diverse ecosystem. Corals reefs in the Caribbean Sea are disease hotspots and many reefs have experienced population collapses due to outbreaks of disease. Importantly, coral species vary in their susceptible to disease, but the reasons behind this variation are unknown. This project will quantify coral susceptibility to disease by examining coral immunity using several novel approaches and experiments. Seven species of coral that differ in disease susceptibility, growth rates, growth form and reproductive strategies will be used. Immune responses of each species of coral will be measured by exposing the corals to bacterial immune stimulators. Susceptibility to white plague disease, a prevalent disease affecting many species of corals, will also be measured by exposing the corals to active white plague disease and calculating disease transmission rates. The immune response and disease transmission data for each coral species will be used to develop a predictive model to determine how different coral communities will respond to disease threats under climate change scenarios. This project will support graduate students at University of Texas, Arlington (Hispanic-serving Institution) and University of Virgin Islands (Historically Black University) and many undergraduate students at all three institutions (Mote Marine Laboratory). This research will be highlighted at outreach events at all three institutions which take place regularly and include Earth Day Texas in Dallas, TX, Mote's Living Reef Exhibit and Aquarium in Sarasota, FL and "Reef Fest" and Agricultural fairs in the U.S. Virgin Islands.</p>
<p>Environmental changes, such as ocean warming, have led to an increase in the prevalence of coral diseases, causing region-wide population collapses in some locations. However, not all coral species, or even populations within species, are affected by disease equally. Some species are host to many different types of diseases, but have limited mortality. Other species suffer significant disease-related mortality. How and why disease susceptibility differs among species and the effects of this differential susceptibility on reef community structure and composition are currently unknown. This project will use immune-challenge experiments that will quantify novel components of the innate immune system of corals, coupled with the application of a trait-based model, to fulfill three goals: 1) Determine variability of coral immune traits in seven common coral species found on Caribbean reefs, 2) Determine the variability in resistance to white plague disease transmission in the same coral species 3) Develop a predictive model of coral community assemblage that incorporates immune traits. Quantification of coral immunity will also incorporate unique approaches, such as combining full transcriptome sequencing with protein activity assays for a gene-to-phenotype analysis. Data will be mapped onto immune pathways for comprehensive pathway evaluation between coral species and these will serve as trait inputs into a "traitspace" model. These traits will provide continuous data within the model, which will create a probability density function (PDF) for the trait distributions of each species. These PDFs will then be used to determine the probability of species under different disease exposure scenarios. Model analyses will determine which traits influence community structure and characterize how disease exposure and the immune response will predict community assemblages through space and time. The completion and application of a trait-base model that incorporates extensive immunity parameters (none of which have been applied to trait models within coral ecosystems) is a distinct product from this project.</p>
Coral Immune Traits
largerWorkCitation
project
eng; USA
oceans
-64.98435
-64.98435
18.34403
18.34403
2017-06-29
2017-06-30
US Virgin Islands
0
BCO-DMO catalogue of parameters from Coral pulse amplitude modulation (PAM) throughout a heat temperature study conducted in aquaria at Brewer’s Bay, St. Thomas, The U.S. Virgin Islands in June of 2017
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/840993.rdf
Name: BUCKET
Units: unitless
Description: <p>Bucket ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/840994.rdf
Name: SPECIES
Units: unitless
Description: <p>Coral species abbreviation (OFAV = Orbicella faveolata, PAST =Porites astreoides)</p>
http://lod.bco-dmo.org/id/dataset-parameter/840995.rdf
Name: CORE
Units: unitless
Description: <p>Coral fragment ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/840996.rdf
Name: DATE
Units: unitless
Description: <p>Local sample date (Atlantic Standard Time, GMT-4) in format mm-dd-yy</p>
http://lod.bco-dmo.org/id/dataset-parameter/840997.rdf
Name: TIME
Units: unitless
Description: <p>Local sample time (Atlantic Standard Time, GMT-4) in format HH:MM AM/PM</p>
http://lod.bco-dmo.org/id/dataset-parameter/840998.rdf
Name: MEMORY
Units: unitless
Description: <p>PAM datapoint ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/840999.rdf
Name: PULSE
Units: unitless
Description: <p>Light Pulse ID</p>
http://lod.bco-dmo.org/id/dataset-parameter/841000.rdf
Name: Fv
Units: unitless
Description: <p>Variable fluorescence</p>
http://lod.bco-dmo.org/id/dataset-parameter/841001.rdf
Name: Fm
Units: unitless
Description: <p>Max fluorescence</p>
http://lod.bco-dmo.org/id/dataset-parameter/841002.rdf
Name: Yield
Units: dimensionless
Description: <p>Quantum yield (Fv/Fm)</p>
http://lod.bco-dmo.org/id/dataset-parameter/841003.rdf
Name: ETR
Units: unknown
Description: <p>Electron Transport Rate (ETR)</p>
http://lod.bco-dmo.org/id/dataset-parameter/841004.rdf
Name: PAR
Units: unknown
Description: <p>Pulse Amplitude Radiation</p>
http://lod.bco-dmo.org/id/dataset-parameter/841005.rdf
Name: TEMP
Units: degrees Celsius
Description: <p>Bucket temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/841006.rdf
Name: TREATMENT
Units: unitless
Description: <p>Treatment ("Control" or "Heat")</p>
http://lod.bco-dmo.org/id/dataset-parameter/841007.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>ISO DateTime (UTC time zone) in ISO 8601 format yyyy-mm-ddTHH:MMZ</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
https://osprey.bco-dmo.org/dataset/840941/data/download
download
onLine
dataset
<p>Location:&nbsp;Brewer’s Bay (18.34403, -64.98435), St. Thomas, The U.S. Virgin Islands<br />
<br />
PAM recorded twice a day in the mid morning and mid afternoon.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Data Manager Processing notes:<br />
* Data submitted in file "Caspase 2 PAM Data Submission.xlsx" sheet 1 extracted to csv<br />
* Time format altered so it can be described accurately.&nbsp; A space added between "A" or "P" and an "M" added to each values so for example "10:12A" changed to "10:12 AM"<br />
* An additional column added to the dataset for the ISO Date Time in ISO 8601 format in UTC time using date and time provided in local time zone "Atlantic Standard Time (GMT-4)"</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Diving Pulse amplitude modulation (Diving PAM)
Diving Pulse amplitude modulation (Diving PAM)
PI Supplied Instrument Name: Diving Pulse amplitude modulation (Diving PAM) Instrument Name: Fluorometer Instrument Short Name:Fluorometer Instrument Description: A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/113/