Bottle sampling from 2012 to 2019 in the Gulf of Maine

Website: https://www.bco-dmo.org/dataset/843467
Data Type: Cruise Results
Version: 1
Version Date: 2021-03-05

Project
» WHCOHH - Physiological and behavioral plasticity in harmful algal bloom dynamics: variation across different habitats (WHCOHH Algal Bloom Dynamics)

Program
» Woods Hole Center for Oceans and Human Health (WHCOHH)
ContributorsAffiliationRole
McGillicuddy, Dennis J.Woods Hole Oceanographic Institution (WHOI)Principal Investigator
Keafer, BruceWoods Hole Oceanographic Institution (WHOI)Co-Principal Investigator
Kosnyrev, OlgaWoods Hole Oceanographic Institution (WHOI)Data Manager
Soenen, KarenWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Bottle sampling from 2012 to 2019 in the Gulf of Maine.


Coverage

Spatial Extent: N:44.983 E:-66.113 S:41.528 W:-70.793
Temporal Extent: 2012-05-23 - 2019-08-12

Methods & Sampling

Sea-Bird SBE 9 CTD data measurements using Sea-Bird Software SBE Seasave at standard CTD stations: profiles (down casts) with water sampling (up casts).


Data Processing Description

Sea-Bird Software SBE Data Processing

BCO-DMO Processing notes:

  • Adjusted station numbers (everything ending with .0 to integer) to join with location file
  • Concatenated all bottle files, added file names as Cruise IDs
  • Adjusted headers to comply with database requirements
  • Rounded fields to 3 and 4 decimales
  • Converted dates to ISO format

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Data Files

File
bottle_data_all.csv
(Comma Separated Values (.csv), 905.89 KB)
MD5:32cbb1e1606d89b06a20d3dbc0a9319a
Primary data file for dataset ID 843467
WHCOHH_Bottle_Data
filename: CTD_BTL_data.zip
(ZIP Archive (ZIP), 241.70 KB)
MD5:fed265e022c6fa21c290e6dd79614df2
Bottle data from 2012 to 2019 related to the Woods Hole Center for Ocean and Human Health project

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Parameters

ParameterDescriptionUnits
Cruise_ID

Ship ID, year and cruise number

unitless
CTD_Cast_Number

description

unitless
Latitude

latitude

degN
Longitude

longitude

degW
Bottle

niskin number

unitless
Sal00

salinity

unitless
Sigma_00

sigma-theta density

kg/m^3
Sbeox0

dissolved oxygen concentration

ml/L
TimeS

elapsed time

sec
PrDM

pressure

db
T090C

temperature

degC
C0

conductivity

S/m
WetStar

fluorescence 1

mg/m^3
Sbeox0V

raw oxygen

V
Scan

scan number

unitless
Ph

pH

unitless
CStarTr0

Beam Transmission, WET Labs C-Star

%
AltM

altimetry

m
Par

PAR/Irradiance

microEinsteins/m^2/second
FlECO_AFL

fluorescence 2

mg/m^3
SeaTurbMtr

turbidity

NTU
Spar

SPAR/Surface Irradiance

microEinsteins/m^2/second
Xmiss

beam transmission, Chelsea/Seatech

%
ISO_DateTime_UTC

DateTime of sampling in UTC timezone and in ISO format (yyyy-mm-ddThh:mm:ssZ)

unitless


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Instruments

Dataset-specific Instrument Name
Sea-Bird SBE 9
Generic Instrument Name
CTD Sea-Bird 9
Dataset-specific Description
Sea-Bird SBE 9 CTD data measurements
Generic Instrument Description
The Sea-Bird SBE 9 is a type of CTD instrument package. The SBE 9 is the Underwater Unit and is most often combined with the SBE 11 Deck Unit (for real-time readout using conductive wire) when deployed from a research vessel. The combination of the SBE 9 and SBE 11 is called a SBE 911. The SBE 9 uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 and SBE 4). The SBE 9 CTD can be configured with auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorometer, altimeter, etc.). Note that in most cases, it is more accurate to specify SBE 911 than SBE 9 since it is likely a SBE 11 deck unit was used. more information from Sea-Bird Electronics


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Deployments

CT2015-01

Website
Platform
R/V Connecticut
Start Date
2015-05-07
End Date
2015-05-07

CT2015-04

Website
Platform
R/V Connecticut
Start Date
2015-08-06
End Date
2015-08-07

CT2016-01

Website
Platform
R/V Connecticut
Start Date
2016-05-03
End Date
2016-05-05

CT2016-02

Website
Platform
R/V Connecticut
Start Date
2016-07-19
End Date
2016-07-20

CT2018-01

Website
Platform
R/V Connecticut
Start Date
2018-04-30
End Date
2018-05-02

CT2018-02

Website
Platform
R/V Connecticut
Start Date
2018-07-18
End Date
2018-07-19

CT2019-01

Website
Platform
R/V Connecticut
Start Date
2019-06-12
End Date
2019-06-17

CT2019-02

Website
Platform
R/V Connecticut
Start Date
2019-07-09
End Date
2019-07-11

CT2019-03

Website
Platform
R/V Connecticut
Start Date
2019-08-13
End Date
2019-08-13

GC2016-01

Website
Platform
R/V Gulf Challenger
Start Date
2016-10-05
End Date
2016-10-07

TI603

Website
Platform
R/V Tioga
Start Date
2012-05-23
End Date
2012-05-25

TI606

Website
Platform
R/V Tioga
Start Date
2012-06-11
End Date
2012-06-11

TI623

Website
Platform
R/V Tioga
Start Date
2012-08-04
End Date
2012-08-05

TI661

Website
Platform
R/V Tioga
Start Date
2013-04-28
End Date
2013-04-28

TI667

Website
Platform
R/V Tioga
Start Date
2013-05-14
End Date
2013-05-16

TI670

Website
Platform
R/V Tioga
Start Date
2013-05-30
End Date
2013-05-31

TI672

Website
Platform
R/V Tioga
Start Date
2013-06-12
End Date
2013-06-13

TI677

Website
Platform
R/V Tioga
Start Date
2013-07-08
End Date
2013-07-09

TI691

Website
Platform
R/V Tioga
Start Date
2013-08-03
End Date
2013-08-07

TI747

Website
Platform
R/V Tioga
Start Date
2014-05-02
End Date
2014-05-03

TI751

Website
Platform
R/V Tioga
Start Date
2014-05-20
End Date
2014-05-22

TI752

Website
Platform
R/V Tioga
Start Date
2014-06-06
End Date
2014-06-06

TI758

Website
Platform
R/V Tioga
Start Date
2014-06-15
End Date
2014-06-17

TI762

Website
Platform
R/V Tioga
Start Date
2014-07-10
End Date
2014-07-12

TI770

Website
Platform
R/V Tioga
Start Date
2014-07-25
End Date
2014-07-27

TI813

Website
Platform
R/V Tioga
Start Date
2015-06-17
End Date
2015-06-18

TI817

Website
Platform
R/V Tioga
Start Date
2015-07-07
End Date
2015-07-08

TI831

Website
Platform
R/V Tioga
Start Date
2015-08-02
End Date
2015-08-05

TI906

Website
Platform
R/V Tioga
Start Date
2016-10-20
End Date
2016-10-20

TI972

Website
Platform
R/V Tioga
Start Date
2017-07-17
End Date
2017-07-22

TI978

Website
Platform
R/V Tioga
Start Date
2017-08-09
End Date
2017-08-11


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Project Information

WHCOHH - Physiological and behavioral plasticity in harmful algal bloom dynamics: variation across different habitats (WHCOHH Algal Bloom Dynamics)


Alexandrium catenella and Pseudo-nitzschia spp. threaten human health through their production of potent neurotoxins that respectively cause Paralytic Shellfish Poisoning and Amnesic Shellfish Poisoning. Both are widespread across coastal waters of the U.S. and globally. Environmental factors alter marine ecosystems in many unanticipated ways, and a major concern is that the occurrence of these harmful algal blooms (HABs) and their concomitant human health impacts will grow. This project addresses key uncertainties regarding the impact of environmental variability on the timing and severity of HABs through detailed biological and ecological study of Alexandrium and Pseudo-nitzschia blooms within the Gulf of Maine (GOM). The GOM is an ideal system because of the long history of regional HAB issues and associated groundbreaking research by WHCOHH. Comprehensive studies of bloom physiology, toxicity, and oceanographic drivers have led to construction of coupled physical-biological models that have improved our understanding of key HAB dynamics and set the stage for continued interdisciplinary investigation of mechanisms at the cellular-to-GOM scale that are relevant to human exposure and health. In particular, the physiological responses of these HABs — growth, toxicity, and life cycle transitions — to shifting environmental conditions remain uncertain. We hypothesize that long-term trends in HAB risks in the GOM are inherently linked to physiological processes and toxin dynamics that are driven by ecological stimuli. This project’s aims are designed to illuminate the role of life cycle dynamics and cellular physiology in determining the occurrence of Alexandrium and Pseudo-nitzschia blooms. We apply a wide variety of innovative approaches for study of natural populations in situ, leveraging a unique region-scale HAB observing system (HABON-NE). Aims 1 and 2 focus on A. catenella and seek to characterize cyst dormancy cycles, cyst formation, and subsequent bloom termination. These aims build upon prior successful approaches and models from study of inshore systems, asking the question if open water populations of the GOM are governed by similar dynamics. Aim 3 investigates the physiology underlying the emerging bloom dynamics of Pseudo-nitzschia in the GOM with in situ physiological observation coupled with targeted metatranscriptomics. Through the direct assessment of life cycle processes and physiology of HABs in the GOM, the results from this work will be directly applicable to the successful integration of physiology into models (Project 2) and inform estimates of potential risk for human exposure to HAB toxins (Project 3).



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Program Information

Woods Hole Center for Oceans and Human Health (WHCOHH)


Coverage: Western N. Atlantic, Arctic


Overall Abstract:
The Woods Hole Center for Oceans and Human Health (WHCOHH) will comprise a strong and integrated set of research projects using novel in situ sampling technologies and modeling approaches building on prior research to address how environmental factors influence harmful algal bloom (HAB) dynamics and human exposure to HAB toxins, a serious and global human health threat. The overall objective is to protect public health through enhanced understanding of how oceanic processes affect the intensity and distribution of toxin-producing HABs and to understand the potential health risks from exposure even to low levels of their potent neurotoxins, especially during susceptible stages of life. The Center will focus on two key HAB taxa: Alexandrium catenella, which produces the saxitoxins responsible for paralytic shellfish poisoning (PSP), and Pseudo-nitzschia spp., which produce domoic acid responsible for amnesic shellfish poisoning (ASP) syndrome, both are expanding geographically. Novel, targeted, efficient, and data-rich sampling approaches developed by the applicants and applied in situ in natural settings have revealed new controls of A. catenella population dynamics, and have identified possible new environmental links regarding toxic Pseudo-nitzschia species. Project 1 will examine further the physiological and environmental variables affecting these HABs, which may underlie population adaptation in different habitats and different environmental regimes. Project 2 will incorporate these new and fundamental insights on bloom regulation into coupled population models to predict HAB events, a key step toward being able to quantify future risks from this recurrent public health threat. In biomedical studies with the zebrafish model, Project 3 has identified myelination in the developing brain as a target of domoic acid. They will use transgenic zebrafish and single-cell RNA-sequencing to identify the cell-specific mechanisms underlying effects of domoic acid, saxitoxin, and the cyanotoxin anatoxin-a in zebrafish embryos in vivo and will use human iPSC-derived 3D brain systems in vitro to elucidate toxin effects on neural and glial cell differentiation in human cells. Studies also will determine whether prior exposure to ubiquitous persistent organic pollutants may modify effects of subsequent exposure to saxitoxin and domoic acid. All projects will collaborate to link oceanic processes to human exposure, helping to define the exposure of susceptible human subpopulations. The Community Engagement Core will facilitate integration of the research with education and engagement of resource managers and other stakeholders. We also will improve awareness of emerging HAB issues for the public health community and develop new educational materials and interactive activities for K-12 classrooms, and for health care providers. An Administrative Core will encourage open discussion of planning, integration, and communication, and provide rigorous evaluation of progress in all aspects of the program.

NSF Award Abstract: See https://www.nsf.gov/awardsearch/show-award?AWD_ID=2418297

The data management plan for the program can be found here.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)
National Institutes of Health (NIH)
National Institutes of Health (NIH)

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