http://lod.bco-dmo.org/id/dataset/843467
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-03-05
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Bottle sampling from 2012 to 2019 in the Gulf of Maine
2021-03-05
publication
2021-03-05
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-05-04
publication
https://doi.org/10.26008/1912/bco-dmo.843467.1
Dennis J. McGillicuddy
Woods Hole Oceanographic Institution
principalInvestigator
Bruce Keafer
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: McGillicuddy, D. J., Keafer, B., Kosnyrev, O. (2021) Bottle sampling from 2012 to 2019 in the Gulf of Maine. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-03-05 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.843467.1 [access date]
Bottle data Dataset Description: Methods and Sampling: <p>Sea-Bird SBE 9 CTD data measurements using Sea-Bird Software SBE Seasave at standard CTD stations: profiles (down casts) with water sampling (up casts).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1314642 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1314642
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1840381 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1840381
Funding provided by National Institutes of Health (NIH) Award Number: NIH-P01ES021923 Award URL: https://reporter.nih.gov/project-details/8388954#details
Funding provided by National Institutes of Health (NIH) Award Number: NIH-P01ES028938 Award URL: https://taggs.hhs.gov/Detail/AwardDetail?arg_AwardNum=P01ES028938&arg_ProgOfficeCode=123
completed
Dennis J. McGillicuddy
Woods Hole Oceanographic Institution
508-289-2683
266 Woods Hole Road Bigelow 209B, Mail Stop 11
Woods Hole
MA
02543
USA
dmcgillicuddy@whoi.edu
pointOfContact
Bruce Keafer
Woods Hole Oceanographic Institution
+1 508 289-2509
Woods Hole Oceanographic Institution Department of Biology MS #32
Woods Hole
MA
02543
USA
bkeafer@whoi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Cruise_ID
CTD_Cast_Number
Latitude
Longitude
Bottle
Sal00
Sigma_00
Sbeox0
TimeS
PrDM
T090C
C0
WetStar
Sbeox0V
Scan
Ph
CStarTr0
AltM
Par
FlECO_AFL
SeaTurbMtr
Spar
Xmiss
ISO_DateTime_UTC
Sea-Bird SBE 9
theme
None, User defined
Cruise identifier
cast
latitude
longitude
Niskin bottle number
bottle salinity
sigma-theta
dissolved Oxygen
time_elapsed
water pressure
water temperature at measurement depth
conductivity
fluorescence
Oxygen in volts
scan
pH
transmission
altitude
No BCO-DMO term
PAR
SPAR
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird 9
instrument
BCO-DMO Standard Instruments
CT2015-01
CT2015-04
CT2016-01
CT2016-02
CT2018-01
CT2018-02
CT2019-01
CT2019-02
CT2019-03
GC2016-01
TI603
TI606
TI623
TI661
TI667
TI670
TI672
TI677
TI691
TI747
TI751
TI752
TI758
TI762
TI770
TI813
TI817
TI831
TI906
TI972
TI978
service
Deployment Activity
Gulf of Maine
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Woods Hole Center for Oceans and Human Health
https://www2.whoi.edu/site/whcohh/
Woods Hole Center for Oceans and Human Health
Overall Abstract:
The Woods Hole Center for Oceans and Human Health (WHCOHH) will comprise a strong and integrated set of research projects using novel in situ sampling technologies and modeling approaches building on prior research to address how environmental factors influence harmful algal bloom (HAB) dynamics and human exposure to HAB toxins, a serious and global human health threat. The overall objective is to protect public health through enhanced understanding of how oceanic processes affect the intensity and distribution of toxin-producing HABs and to understand the potential health risks from exposure even to low levels of their potent neurotoxins, especially during susceptible stages of life. The Center will focus on two key HAB taxa: Alexandrium catenella, which produces the saxitoxins responsible for paralytic shellfish poisoning (PSP), and Pseudo-nitzschia spp., which produce domoic acid responsible for amnesic shellfish poisoning (ASP) syndrome, both are expanding geographically. Novel, targeted, efficient, and data-rich sampling approaches developed by the applicants and applied in situ in natural settings have revealed new controls of A. catenella population dynamics, and have identified possible new environmental links regarding toxic Pseudo-nitzschia species. Project 1 will examine further the physiological and environmental variables affecting these HABs, which may underlie population adaptation in different habitats and different environmental regimes. Project 2 will incorporate these new and fundamental insights on bloom regulation into coupled population models to predict HAB events, a key step toward being able to quantify future risks from this recurrent public health threat. In biomedical studies with the zebrafish model, Project 3 has identified myelination in the developing brain as a target of domoic acid. They will use transgenic zebrafish and single-cell RNA-sequencing to identify the cell-specific mechanisms underlying effects of domoic acid, saxitoxin, and the cyanotoxin anatoxin-a in zebrafish embryos in vivo and will use human iPSC-derived 3D brain systems in vitro to elucidate toxin effects on neural and glial cell differentiation in human cells. Studies also will determine whether prior exposure to ubiquitous persistent organic pollutants may modify effects of subsequent exposure to saxitoxin and domoic acid. All projects will collaborate to link oceanic processes to human exposure, helping to define the exposure of susceptible human subpopulations. The Community Engagement Core will facilitate integration of the research with education and engagement of resource managers and other stakeholders. We also will improve awareness of emerging HAB issues for the public health community and develop new educational materials and interactive activities for K-12 classrooms, and for health care providers. An Administrative Core will encourage open discussion of planning, integration, and communication, and provide rigorous evaluation of progress in all aspects of the program.
NSF Award Abstract: See https://www.nsf.gov/awardsearch/show-award?AWD_ID=2418297
The data management plan for the program can be found here.
WHCOHH
largerWorkCitation
program
WHCOHH - Physiological and behavioral plasticity in harmful algal bloom dynamics: variation across different habitats
https://osprey.bco-dmo.org/project/818414
WHCOHH - Physiological and behavioral plasticity in harmful algal bloom dynamics: variation across different habitats
<p><em>Alexandrium catenella</em> and <em>Pseudo-nitzschia</em> spp. threaten human health through their production of potent neurotoxins that respectively cause Paralytic Shellfish Poisoning and Amnesic Shellfish Poisoning. Both are widespread across coastal waters of the U.S. and globally. Environmental factors alter marine ecosystems in many unanticipated ways, and a major concern is that the occurrence of these harmful algal blooms (HABs) and their concomitant human health impacts will grow. This project addresses key uncertainties regarding the impact of environmental variability on the timing and severity of HABs through detailed biological and ecological study of <em>Alexandrium</em> and <em>Pseudo-nitzschia</em> blooms within the Gulf of Maine (GOM). The GOM is an ideal system because of the long history of regional HAB issues and associated groundbreaking research by WHCOHH. Comprehensive studies of bloom physiology, toxicity, and oceanographic drivers have led to construction of coupled physical-biological models that have improved our understanding of key HAB dynamics and set the stage for continued interdisciplinary investigation of mechanisms at the cellular-to-GOM scale that are relevant to human exposure and health. In particular, the physiological responses of these HABs — growth, toxicity, and life cycle transitions — to shifting environmental conditions remain uncertain. <strong>We hypothesize that long-term trends in HAB risks in the GOM are inherently linked to physiological processes and toxin dynamics that are driven by ecological stimuli</strong>. This project’s aims are designed to illuminate the role of life cycle dynamics and cellular physiology in determining the occurrence of <em>Alexandrium</em> and <em>Pseudo-nitzschia</em> blooms. We apply a wide variety of innovative approaches for study of natural populations in situ, leveraging a unique region-scale HAB observing system (HABON-NE). Aims 1 and 2 focus on <em>A. catenella</em> and seek to characterize cyst dormancy cycles, cyst formation, and subsequent bloom termination. These aims build upon prior successful approaches and models from study of inshore systems, asking the question if open water populations of the GOM are governed by similar dynamics. Aim 3 investigates the physiology underlying the emerging bloom dynamics of <em>Pseudo-nitzschia</em> in the GOM with in situ physiological observation coupled with targeted metatranscriptomics. Through the direct assessment of life cycle processes and physiology of HABs in the GOM, the results from this work will be directly applicable to the successful integration of physiology into models (Project 2) and inform estimates of potential risk for human exposure to HAB toxins (Project 3).</p>
WHCOHH Algal Bloom Dynamics
largerWorkCitation
project
eng; USA
oceans
Gulf of Maine
-70.793
-66.113
41.528
44.983
2012-05-23
2019-08-12
0
BCO-DMO catalogue of parameters from Bottle sampling from 2012 to 2019 in the Gulf of Maine
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/848659.rdf
Name: Cruise_ID
Units: unitless
Description: <p>Ship ID, year and cruise number</p>
http://lod.bco-dmo.org/id/dataset-parameter/848660.rdf
Name: CTD_Cast_Number
Units: unitless
Description: <p>description</p>
http://lod.bco-dmo.org/id/dataset-parameter/848661.rdf
Name: Latitude
Units: degN
Description: <p>latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/848662.rdf
Name: Longitude
Units: degW
Description: <p>longitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/848663.rdf
Name: Bottle
Units: unitless
Description: <p>niskin number</p>
http://lod.bco-dmo.org/id/dataset-parameter/848664.rdf
Name: Sal00
Units: unitless
Description: <p>salinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/848665.rdf
Name: Sigma_00
Units: kg/m^3
Description: <p>sigma-theta density</p>
http://lod.bco-dmo.org/id/dataset-parameter/848666.rdf
Name: Sbeox0
Units: ml/L
Description: <p>dissolved oxygen concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/848667.rdf
Name: TimeS
Units: sec
Description: <p>elapsed time</p>
http://lod.bco-dmo.org/id/dataset-parameter/848668.rdf
Name: PrDM
Units: db
Description: <p>pressure</p>
http://lod.bco-dmo.org/id/dataset-parameter/848669.rdf
Name: T090C
Units: degC
Description: <p>temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/848670.rdf
Name: C0
Units: S/m
Description: <p>conductivity</p>
http://lod.bco-dmo.org/id/dataset-parameter/848671.rdf
Name: WetStar
Units: mg/m^3
Description: <p>fluorescence 1</p>
http://lod.bco-dmo.org/id/dataset-parameter/848672.rdf
Name: Sbeox0V
Units: V
Description: <p>raw oxygen</p>
http://lod.bco-dmo.org/id/dataset-parameter/848673.rdf
Name: Scan
Units: unitless
Description: <p>scan number</p>
http://lod.bco-dmo.org/id/dataset-parameter/848674.rdf
Name: Ph
Units: unitless
Description: <p>pH</p>
http://lod.bco-dmo.org/id/dataset-parameter/848675.rdf
Name: CStarTr0
Units: %
Description: <p>Beam Transmission, WET Labs C-Star</p>
http://lod.bco-dmo.org/id/dataset-parameter/848676.rdf
Name: AltM
Units: m
Description: <p>altimetry</p>
http://lod.bco-dmo.org/id/dataset-parameter/848677.rdf
Name: Par
Units: microEinsteins/m^2/second
Description: <p>PAR/Irradiance</p>
http://lod.bco-dmo.org/id/dataset-parameter/848678.rdf
Name: FlECO_AFL
Units: mg/m^3
Description: <p>fluorescence 2</p>
http://lod.bco-dmo.org/id/dataset-parameter/848679.rdf
Name: SeaTurbMtr
Units: NTU
Description: <p>turbidity</p>
http://lod.bco-dmo.org/id/dataset-parameter/848680.rdf
Name: Spar
Units: microEinsteins/m^2/second
Description: <p>SPAR/Surface Irradiance</p>
http://lod.bco-dmo.org/id/dataset-parameter/848681.rdf
Name: Xmiss
Units: %
Description: <p>beam transmission, Chelsea/Seatech</p>
http://lod.bco-dmo.org/id/dataset-parameter/851319.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>DateTime of sampling in UTC timezone and in ISO format (yyyy-mm-ddThh:mm:ssZ)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
247496
https://darchive.mblwhoilibrary.org/bitstream/1912/27039/1/CTD_BTL_data.zip
download
927635
https://darchive.mblwhoilibrary.org/bitstream/1912/27039/2/dataset-843467_bottle-data__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.843467.1
download
onLine
dataset
<p>Sea-Bird SBE 9 CTD data measurements using Sea-Bird Software SBE Seasave at standard CTD stations: profiles (down casts) with water sampling (up casts).</p>
Specified by the Principal Investigator(s)
<p>Sea-Bird Software SBE Data Processing</p>
<p>BCO-DMO Processing notes:</p>
<ul>
<li>Adjusted station numbers (everything ending with .0 to integer) to join with location file</li>
<li>Concatenated all bottle files, added file names as Cruise IDs</li>
<li>Adjusted headers to comply with database requirements</li>
<li>Rounded fields to 3 and 4 decimales</li>
<li>Converted dates to ISO format</li>
</ul>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Sea-Bird SBE 9
Sea-Bird SBE 9
PI Supplied Instrument Name: Sea-Bird SBE 9 PI Supplied Instrument Description:Sea-Bird SBE 9 CTD data measurements Instrument Name: CTD Sea-Bird 9 Instrument Short Name:CTD SBE 9 Instrument Description: The Sea-Bird SBE 9 is a type of CTD instrument package. The SBE 9 is the Underwater Unit and is most often combined with the SBE 11 Deck Unit (for real-time readout using conductive wire) when deployed from a research vessel. The combination of the SBE 9 and SBE 11 is called a SBE 911. The SBE 9 uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 and SBE 4). The SBE 9 CTD can be configured with auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorometer, altimeter, etc.). Note that in most cases, it is more accurate to specify SBE 911 than SBE 9 since it is likely a SBE 11 deck unit was used. more information from Sea-Bird Electronics Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
Cruise: CT2015-01
CT2015-01
R/V Connecticut
R/V Connecticut
vessel
CT2015-01
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2015-04
CT2015-04
R/V Connecticut
R/V Connecticut
vessel
CT2015-04
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2016-01
CT2016-01
R/V Connecticut
R/V Connecticut
vessel
CT2016-01
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2016-02
CT2016-02
R/V Connecticut
R/V Connecticut
vessel
CT2016-02
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2018-01
CT2018-01
R/V Connecticut
R/V Connecticut
vessel
CT2018-01
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2018-02
CT2018-02
R/V Connecticut
R/V Connecticut
vessel
CT2018-02
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2019-01
CT2019-01
R/V Connecticut
R/V Connecticut
vessel
CT2019-01
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2019-02
CT2019-02
R/V Connecticut
R/V Connecticut
vessel
CT2019-02
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: CT2019-03
CT2019-03
R/V Connecticut
R/V Connecticut
vessel
CT2019-03
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: GC2016-01
GC2016-01
R/V Gulf Challenger
Community Standard Description
International Council for the Exploration of the Sea
R/V Gulf Challenger
vessel
GC2016-01
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI603
TI603
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI603
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI606
TI606
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI606
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI623
TI623
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI623
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI661
TI661
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI661
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI667
TI667
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI667
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI670
TI670
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI670
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI672
TI672
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI672
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI677
TI677
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI677
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI691
TI691
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI691
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI747
TI747
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI747
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI751
TI751
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI751
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI752
TI752
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI752
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI758
TI758
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI758
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI762
TI762
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI762
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI770
TI770
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI770
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI813
TI813
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI813
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI817
TI817
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI817
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI831
TI831
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI831
Katherine Hubbard
Woods Hole Oceanographic Institution
Cruise: TI906
TI906
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI906
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI972
TI972
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI972
Bruce Keafer
Woods Hole Oceanographic Institution
Cruise: TI978
TI978
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel
TI978
Bruce Keafer
Woods Hole Oceanographic Institution
R/V Connecticut
R/V Connecticut
vessel
R/V Gulf Challenger
Community Standard Description
International Council for the Exploration of the Sea
R/V Gulf Challenger
vessel
R/V Tioga
Community Standard Description
International Council for the Exploration of the Sea
R/V Tioga
vessel