Trace metals, hydrography, and fluorescence from CTD casts on the RVIB Nathaniel B. Palmer (cruise NBP1704) in the Ross Sea, Antarctica from April to May 2017

Website: https://www.bco-dmo.org/dataset/856009
Data Type: Cruise Results
Version: 1
Version Date: 2021-07-22

Project
» Impact of Convective Processes and Sea Ice Formation on the Distribution of Iron in the Ross Sea: Closing the Seasonal Cycle (PIPERS)
ContributorsAffiliationRole
Sedwick, Peter N.Old Dominion University (ODU)Principal Investigator, Contact
Heyl, TaylorWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
Water column samples for analysis of trace elements (dissolved, soluble, and particulate), and continuous profiles of temperature, salinity, chlorophyll fluorescence, and dissolved oxygen concentration were collected from CTD casts on the RVIB Nathaniel B. Palmer (cruise NBP1704) in the Ross Sea, Antarctica from April to May 2017.


Coverage

Spatial Extent: N:-71.128 E:-179.956 S:-77.715 W:178.861
Temporal Extent: 2017-04-23 - 2017-05-28

Methods & Sampling

Water-column sample collection and in-situ measurements: Water-column samples for analysis of trace elements (dissolved, soluble and particulate), and continuous profiles of temperature, salinity, chlorophyll fluorescence and dissolved oxygen concentration were collected using a trace-metal clean conductivity-temperature-depth sensor (SBE 19 plus, SeaBird Electronics) mounted on a custom-built trace-metal clean carousel (SeaBird Electronics) fitted with custom-modified 5-L Teflon-lined external-closure Niskin-X samplers (General Oceanics), deployed using a non-metallic line with polymer jacket.

Shipboard processing of water-column samples: Upon recovery, the Niskin-X samplers were transferred into a shipboard Class-100 clean laboratory container, where seawater was filtered through pre-rinsed 0.2-micrometer (µm) pore AcroPak Supor filter capsules (Pall) into acid-cleaned 125 milliliter (mL) low-density polyethylene (LDPE) bottles (Nalgene) for shore-based dissolved trace element determinations, and, for selected samples, into acid-cleaned 60 mL LDPE bottles (Nalgene) for subsequent ultrafiltration through acid-rinsed 0.02 µm Anotop syringe filters (Whatman) following Ussher et al. (2010) for shore-based soluble trace element determinations. While drawing samples, the Niskin-X samplers were pressurized using 0.2 µm-filtered ultra-high purity compressed nitrogen gas. All samples used for dissolved- and soluble trace element determinations were acidified at sea to pH ~1.8 with ultrapure hydrochloric acid (Fisher Optima grade) then stored at room temperature until post-cruise analysis at Old Dominion University. In addition, from selected samples, a pre-cleaned perfluoroalkoxy alkane (PFA) cylindrical reservoir (Savillex) was filled with approximately 1.8 liters (L) of unfiltered seawater, which was passed through sequential 2 µm- and 0.2 µm-pore acid-cleaned 47-mm diameter polycarbonate membrane filters (Poretics) mounted in an in-line PFA filter holder (Savillex) using overpressure from 0.2 µm-filtered compressed air. The filters were then rinsed with 200 mL of ultrapure deionized water (Barnstead Nanopure) that had been adjusted to pH 8 with ultrapure ammonium hydroxide solution (Fisher Optima grade), placed in pre-cleaned polystyrene Petri dishes (Fisher), then air-dried under a Class-100 clean-air bench. The dried filters were stored in the sealed Petri dishes inside a desiccator at room temperature until post-cruise analysis at the NOAA Pacific Marine Environmental Laboratory.

Determination of DFe, sFe, DMn, sMn, DNi, DCu, DZn: Concentrations of these dissolved and soluble transition metals were measured in 0.2 µm-filtered (dissolved fraction) or 0.02 µm-filtered (soluble fraction) acidified seawater samples using a sector-field inductively-coupled plasma mass spectrometer (Thermo Fisher Scientific ElementXR) with an in-line separation-preconcentration system (Elemental Scientific SeaFAST SP3), following a modification of the method of Lagerström et al. (2013). Calibration standards were prepared in low-analyte concentration seawater, for which initial concentrations were determined using the method of standard additions, and were introduced using the same in-line separation-preconcentration procedure as the seawater samples. Scandium was used as an internal standard. Analyses were performed on a volumetric basis, so concentrations are reported in units of nanomole per liter (nM). Analytical blank concentrations were assessed by applying the in-line separation-preconcentration procedure including all reagents except loading air in place of the seawater sample ("air blank"), with the following mean blank concentrations: 0.002 nM DFe, <0.001 nM DMn, 0.003 nM DNi, 0.001 nM DCu, 0.001 nM DZn. Limits of detection were defined as the concentration equivalent to 3 times the standard deviation on the mean blank (n = 12), as follows: 0.042 nM DFe and sFe, 0.003 nM DMn and sMn, 0.021 nM DNi, 0.006 nM DCu, and 0.018 nM DZn. Estimated analytical precision, expressed as percent relative standard deviation on the mean (%RSD), is the average value of the %RSD obtained for replicate (separate-day) analyses of 58 different samples, as follows: 8.0% for DFe and sFe, 1.8% for DMn and sMn, 3.0% for DNi, 2.5% for DCu, and 5.8% for DZn. In terms of external consistency, we obtained the following mean concentrations for the GEOTRACES GSP seawater consensus material: 0.187 ± 0.037 nM DFe (n = 17; consensus value 0.155 ± 0.045 nM), 0.789 ± 0.016 nM DMn (n = 19; consensus value 0.778 ± 0.034 nM), 2.59 ±0.08 nM DNi (n = 19, consensus value 2.60 ± 0.10 nM), 0.581 ± 0.015 nM DCu (n = 19; consensus value 0.574 ± 0.053 nM), and 0.015 ± 0.003 nM DZn (n = 3; consensus value 0.030 ± 0.052 nM). Our reported GSP DZn concentration is for measurements in aliquots from a freshly-opened bottle of this consensus material; two other bottles yielded much higher concentrations and are therefore assumed to be contaminated.

Determination of pFe-large, pFe-small, pMn-large, pMn-small, pAl-large, pAl-small: The concentrations of Fe, Mn, and Al in suspended particles separated on 2 µm- and 0.2 µm-pore membrane filters (defined as large- and small-particulate fractions, respectively) were measured using energy dispersive X-ray fluorescence (ED-XRF), following the method of Buck et al. (2021). ED-XRF analysis was conducted under a vacuum atmosphere using thin-film principles on a Thermo Fisher Scientific Quant’X equipped with a rhodium target X-ray tube and an electronically-cooled, lithium-drifted solid-state detector. X-rays for primary sample excitation were passed through graphite and metal filters for optimum control of peak-to-background ratios, using the excitation conditions described by Buck et al. (2021). Four separate quality assurance/quality control procedures were conducted: (1) daily energy adjustment was performed for an energy channel alignment of the Quant’X; (2) weekly calibration verification using a series of multi-element samples; (3) weekly analysis of the NIST 2783 standard reference material; and (4) monthly analysis of 10 acid-washed filter blanks. Calibrations were performed using commercially available thin-film standards (MicroMatter Inc.), as well as low-concentration standards for pFe and pMn (<1000 nanograms per square centimeter (ng cm-2)) that were prepared as described by Buck et al. (2021). Field blanks, for which acid-cleaned 0.2 µm- and 2 µm-pore polycarbonate membranes were mounted in the filtration assembly, rinsed with 200 mL of pH 8 ammonium hydroxide solution, then air-dried and stored as for the samples, yielded the following measured blank concentrations that were subtracted from corresponding sample values: 4.5/5.1 ng cm-2 for Fe (0.2 µm/2 µm), below the minimum detection limit for Mn (0.2 µm/2 µm), and 11.78/11.77 ng cm-2 for Al (0.2 µm/2 µm). The minimum detection limit (MDL) for individual elements using ED-XRF is defined as 3 times the square root of the background intensity measured from a standard of known concentration (Bertin, 2012; Buck et al., 2021), which yields the following MLD values: 0.95 ng cm-2 Fe (equivalent to ~0.13 nM pFe), 1.27 ng cm-2 Mn (equivalent to ~0.18 nM pMn), and 9.4 ng cm-2 Al (equivalent to ~2.8 nM pAl). Analytical precision and accuracy of the ED-XRF method were assessed from analyses of the NIST-2783 standard reference material (air particulate on filter media). Mean recoveries ± one standard deviation for individual elements in NIST-2783 by ED-XRF were 108% ± 2.6% for Fe, 104% ± 2.5% for Mn, and 92% ± 3.5% for Al (n = 320).

Temperature: In-situ temperature was measured using a conductivity-temperature-depth sensor (SBE 19 plus, SeaBird Scientific), with data processed using the SBE Data Processing software.

Salinity: Salinity was calculated from in-situ conductivity, as measured using a conductivity-temperature-depth (CTD) sensor (SBE 19 plus, SeaBird Electronics), with data processed using the SBE Data Processing software.

Fluorescence: In-situ chlorophyll fluorescence was measured using a WET Labs ECO-FL(RT)D deep chlorophyll fluorometer with 125 micrograms per liter (μg L-1) range mounted on the CTD rosette, with data processed using the SBE Data Processing software.

Dissolved Oxygen: In-situ dissolved oxygen concentration was measured using an SBE 43 Dissolved Oxygen Sensor mounted on the CTD rosette, with data processed using the SBE Data Processing software.


Data Processing Description

Inductively-coupled plasma mass spectrometer: Instrumental data were collected using ElementXR processing software (Thermo Fisher Scientific), and post-analysis calculations were performed using Microsoft Excel.

Energy dispersive X-ray fluorescence spectrometer: Instrumental data were processed using Quant’X processing software (Thermo Fisher Scientific), and post-analysis calculations were performed using Microsoft Excel.

CTD sensors: Primary and derived data from the CTD sensors (temperature, conductivity, depth, in-situ chlorophyll fluorescence, dissolved oxygen) were processed using using the SBE Data Processing software (SeaBird Scientific).

Known problems: The measured values from the dissolved oxygen concentration sensor were systematically low compared to sensor measurements from a conventional CTD (verified by discrete bottle sample measurements), and are not considered to be quantitatively reliable. We suspect that the sensor membrane was damaged due to exposure to sub-freezing temperatures during deployment and recovery.

Data quality flags were assigned as follows:
1 = good;
2 = good; an average of at least two determinations on different days;
3 = possibly contaminated; determination anomalously high;
4 = sample signal outside the range of calibration standards;
5 = values were systematically low compared to sensor measurements from conventional CTD, and are therefore not considered to be quantitatively reliable.

"BDL" is used to indicate values that are below detection limits. See Methods & Sampling section for detection limits.

 


BCO-DMO Processing Description

- Converted dates to ISO date format (yyyy-mm-dd)
- Adjusted field/parameter names to comply with BCO-DMO naming conventions
- Missing data identifier "ND" (not determined) replaced with 'nd' (BCO-DMO's default missing data identifier)
- Added a conventional header with dataset name, PI names, version date


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Data Files

File
NBP1704_bottle.csv
(Comma Separated Values (.csv), 43.13 KB)
MD5:75eef276cc4bab9054919e260540e70e
Primary data file for dataset ID 856009

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Related Publications

Ackley, S. F., Stammerjohn, S., Maksym, T., Smith, M., Cassano, J., Guest, P., … Parno, J. (2020). Sea-ice production and air/ice/ocean/biogeochemistry interactions in the Ross Sea during the PIPERS 2017 autumn field campaign. Annals of Glaciology, 61(82), 181–195. doi:10.1017/aog.2020.31
Results
Buck, N. J., Barrett, P. M., Morton, P. L., Landing, W. M., & Resing, J. A. (2021). Energy dispersive X‐ray fluorescence methodology and analysis of suspended particulate matter in seawater for trace element compositions and an intercomparison with high‐resolution inductively coupled plasma‐mass spectrometry. Limnology and Oceanography: Methods, 19(6), 401–415. Portico. https://doi.org/10.1002/lom3.10433
Methods
Lagerström, M. E., Field, M. P., Séguret, M., Fischer, L., Hann, S., & Sherrell, R. M. (2013). Automated on-line flow-injection ICP-MS determination of trace metals (Mn, Fe, Co, Ni, Cu and Zn) in open ocean seawater: Application to the GEOTRACES program. Marine Chemistry, 155, 71–80. doi:10.1016/j.marchem.2013.06.001
Methods
Ussher, S. J., Achterberg, E. P., Sarthou, G., Laan, P., de Baar, H. J. W., & Worsfold, P. J. (2010). Distribution of size fractionated dissolved iron in the Canary Basin. Marine Environmental Research, 70(1), 46–55. doi:10.1016/j.marenvres.2010.03.001
Methods

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Parameters

ParameterDescriptionUnits
StationPIPERS cruise station number unitless
Sample_IDunique identifier for each water sample unitless
Depthsample collection depth (below surface) meters
Latitudelatitude of CTD recovery in decimal degrees North decimal degrees
Longitudelongitude of CTD recovery in decimal degrees East (West is negative) decimal degrees
DateDate of CTD recovery in ISO8601 format (YYYY-MM-DD) unitless
Bottom_Depthapproximate seafloor depth meters
DFedissolved Fe (nanomole per liter
DFe_Flagdata quality flag that applies to DFe (Refer to Processing Description for flag definitions) unitless
sFesoluble Fe (nanomole per liter
sFe_Flagdata quality flag that applies to sFe (Refer to Processing Description for flag definitions) unitless
pFe_large>2 µm particulate Fe concentration nanomole per liter
pFe_small0.2-2 µm particulate Fe concentration nanomole per liter
DMndissolved Mn (nanomole per liter
DMn_Flagdata quality flag that applies to DMn (Refer to Processing Description for flag definitions) unitless
sMnsoluble Mn (nanomole per liter
sMn_Flagdata quality flag that applies to sMn (Refer to Processing Description for flag definitions) unitless
pMn_large>2 µm particulate Mn concentration nanomole per liter
pMn_small0.2-2 µm particulate Mn concentration nanomole per liter
pAl_large>2 µm particulate Al concentration nanomole per liter
pAl_small0.2-2 µm particulate Al concentration nanomole per liter
DNidissolved Ni (nanomole per liter
DNi_Flagdata quality flag that applies to DNi (Refer to Processing Description for flag definitions) unitless
DCudissolved Cu (nanomole per liter
DCu_Flagdata quality flag that applies to DCu (Refer to Processing Description for flag definitions) unitless
DZndissolved Zn (nanomole per liter
DZn_Flagdata quality flag that applies to DZn (Refer to Processing Description for flag definitions) unitless
Temperaturein-situ temperature from CTD degrees celsius
Salinitysalinity calculated from CTD conductivity unitless
Fluorin-situ chlorophyll fluorescence (uncalib) milligrams per cubic meter (mg m-3)
Sigma_Thetadensity calculated as sigma-theta unitless
Oxygenin-situ dissolved oxygen from CTD micromole per kilogram
Oxygen_Flagdata quality flag that applies to Oxygen (Refer to Processing Description for flag definitions) unitless


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Instruments

Dataset-specific Instrument Name
Niskin-X samplers (General Oceanics)
Generic Instrument Name
Niskin bottle
Generic Instrument Description
A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Dataset-specific Instrument Name
SBE 19 plus, SeaBird Scientific
Generic Instrument Name
CTD Sea-Bird
Dataset-specific Description
Calibrated prior to the cruise by SeaBird Scientific
Generic Instrument Description
Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics, no specific unit identified. This instrument designation is used when specific make and model are not known. See also other SeaBird instruments listed under CTD. More information from Sea-Bird Electronics.

Dataset-specific Instrument Name
Fluorometer (in-situ chlorophyll fluorescence) WET Labs ECO-FL(RT)D deep chlorophyll fluorometer
Generic Instrument Name
Fluorometer
Dataset-specific Description
Calibrated prior to the cruise by SeaBird Scientific
Generic Instrument Description
A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Dataset-specific Instrument Name
ElementXR (Thermo Fisher Scientific), with SeaFAST SP3 in-line separation-preconcentration system and autosampler (Elemental Scientific)
Generic Instrument Name
Inductively Coupled Plasma Mass Spectrometer
Generic Instrument Description
An ICP Mass Spec is an instrument that passes nebulized samples into an inductively-coupled gas plasma (8-10000 K) where they are atomized and ionized. Ions of specific mass-to-charge ratios are quantified in a quadrupole mass spectrometer.

Dataset-specific Instrument Name
SBE 43 dissolved oxygen sensor, SeaBird Scientific
Generic Instrument Name
Sea-Bird SBE 43 Dissolved Oxygen Sensor
Dataset-specific Description
Calibrated prior to the cruise by SeaBird Scientific
Generic Instrument Description
The Sea-Bird SBE 43 dissolved oxygen sensor is a redesign of the Clark polarographic membrane type of dissolved oxygen sensors. more information from Sea-Bird Electronics

Dataset-specific Instrument Name
Energy dispersive X-ray fluorescence spectrometer Quant’X (Thermo Fisher Scientific)
Generic Instrument Name
Spectrometer
Generic Instrument Description
A spectrometer is an optical instrument used to measure properties of light over a specific portion of the electromagnetic spectrum.

Dataset-specific Instrument Name
in-line separation-preconcentration system (Elemental Scientific SeaFAST SP3)
Generic Instrument Name
SeaFAST Automated Preconcentration System
Generic Instrument Description
The seaFAST is an automated sample introduction system for analysis of seawater and other high matrix samples for analyses by ICPMS (Inductively Coupled Plasma Mass Spectrometry).


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Deployments

NBP1704

Website
Platform
RVIB Nathaniel B. Palmer
Start Date
2017-04-10
End Date
2017-06-14
Description
See additional cruise information from the Rolling Deck to Repository (R2R): https://www.rvdata.us/search/cruise/NBP1704


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Project Information

Impact of Convective Processes and Sea Ice Formation on the Distribution of Iron in the Ross Sea: Closing the Seasonal Cycle (PIPERS)


Coverage: Ross Sea, Antarctica (ca. 66°S-78°S, 165°E-175°W)


NSF Award Abstract

The waters of the Ross Sea continental shelf are among the most productive in the Southern Ocean, and likely comprise a significant oceanic sink for atmospheric carbon dioxide. In this region, primary production can be limited by the supply of dissolved iron to surface waters during the growing season.
A range of biogeochemical measurements and activities are to be carried out in the late summer-autumnal- early winter time frame in the Ross Sea in order to better understand phytoplankton dynamics, along with carbon export. These biogeochemical parameters include elements such as Fe, C and S believed to be important to Antarctic ecosystems. As well as there being interest in the functioning of the Ross Sea ecosystem leading up to the impending polar night, there is also uncertainty as to what drives the biogeochemical redistribution undergone by micronutrient Fe species during the extensive sea-ice formation at this time of year.

The field setting and remote conditions that accompany the proposed study present several possibilities for STEM education and training at the K-12, undergraduate and graduate levels, as well as for public outreach. At the K-12 level, the project seeks to support the development of educational outreach materials targeting elementary and middle school students,
pre-service science teachers, and in-service science teachers.



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Funding

Funding SourceAward
NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP)

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