http://lod.bco-dmo.org/id/dataset/857147
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-08-03
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK. from 2017 - 2019 (High latitude kelp dynamics project)
2021-08-03
publication
2021-08-03
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2021-10-14
publication
https://doi.org/10.26008/1912/bco-dmo.857147.1
Kristy J. Kroeker
University of California-Santa Cruz
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Bell, L. E., Kroeker, K. J. (2021) Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK. from 2017 - 2019 (High latitude kelp dynamics project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-08-03 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.857147.1 [access date]
Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK. Dataset Description: <p>Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK.</p> Methods and Sampling: <p><strong>Methodology:</strong></p>
<p><strong>Sampling and analytical procedures: </strong>To assess in-situ seasonal changes in coralline algae growth rates, we collected individuals from a crustose coralline algal genus (Crusticorallina painei, C. adhaerens and C. muricata; n=40) and a geniculate coralline species (Bossiella orbigniana; n=40) from a subtidal rocky reef directly adjacent to Harris Is., Sitka Sound, AK (57.032N, 135.273W) in December 2017, July 2018, and January 2019. Crustose individuals targeted for collection were those that had a morphology that could easily be separated from the rocky substrate, often disc-shaped with distinct white growing edges. Geniculate individuals were collected to include the basal holdfast. The individuals were cleaned by removing epiphytic algae and invertebrates with tweezers, and then placed in a 100mg L<sup>-1</sup> concentration of the membrane-permeable live-cell labeling fluorescent dye Calcein for 6h. This dye is absorbed by metabolically active meristematic tissue of the alga at the time of the stain, thus providing a growth benchmark for subsequently added tissue. After staining, each coralline individual (Crusticorallina spp.: a ‘disc’ with at least a 50% intact growing edge; B. orbigniana: a ‘floret’ containing 4-10 apical fronds) was attached to a small PVC stand by using z-spar epoxy putty to affix the older, non-meristematic tissue. Individuals on stands were then outplanted into the field on plates (2 crustose and 2 geniculate indiv. plate<sup>-1</sup>) and bolted onto rocky reef substrate at 10m depth MLLW at the edge of a giant kelp forest at Harris Is (57.032N, 135.277W). Coralline algae were retrieved after 2-3mo, for total outplant durations of 67d (Winter 2018), 66d (Summer 2018), and 103d (Winter 2019).</p>
<p>To measure linear growth, the coralline algae were imaged using a fluorescent lamp channel on a Ziess AxioZoom microscope at the UCSC Microscopy Center. Average growth extension from the original fluorescent stain was calculated for each individual using ImageJ (NIH v1.8.0) by analyzing measurements from up to 13 randomly selected points along the growing edge of the disc (Crusticorallina spp.) or from up to 17 randomly selected apical fronds in the floret (B. orbigniana).&nbsp;</p>
<p><strong>Problem report:</strong></p>
<p>Dataset only includes coralline algae individuals that were 1) not lost in the field, and 2) had sufficient stain uptake to enable measurements of new growth. Crustose coralline individuals that exhibited downward growth (versus primarily lateral growth along the growing edge of the disc) were more difficult to measure for accurate length extension. The parameter name “downward_growth” was used to indicate instances in which this occurred, and these individuals were not included in published analyses.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1752600 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1752600
completed
Kristy J. Kroeker
University of California-Santa Cruz
831-566-8253
100 Shaffer Road
Santa Cruz
CA
95060
USA
kkroeker@ucsc.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
year
season
species
alg_ID
len_um_1
len_um_2
len_um_3
len_um_4
len_um_5
len_um_6
len_um_7
len_um_8
len_um_9
len_um_10
len_um_11
len_um_12
len_um_13
len_um_14
len_um_15
len_um_16
len_um_17
downward_growth
Ziess AxioZoom microscope
theme
None, User defined
year
season
species scientific name (binomial)
individual
length
growth
featureType
BCO-DMO Standard Parameters
Fluorescence Microscope
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
CAREER: Energy fluxes and community stability in a dynamic, high-latitude kelp ecosystem
https://osprey.bco-dmo.org/project/756735
CAREER: Energy fluxes and community stability in a dynamic, high-latitude kelp ecosystem
<p><em>NSF Award Abstract:</em><br />
High latitude kelp forests support a wealth of ecologically and economically important species, buffer coastlines from high-energy storms, and play a critical role in the marine carbon cycle by sequestering and storing large amounts of carbon. Understanding how energy fluxes and consumer-resource interactions vary in these kelp communities is critical for defining robust management strategies that help maintain these valuable ecosystem services. In this integrated research and education program, the project team will investigate how consumer populations respond to variability in temperature, carbonate chemistry and resource quality to influence the food webs and ecosystem stability of kelp forests. A comprehensive suite of studies conducted at the northern range limit for giant kelp (Macrocystis pyrifera) in SE Alaska will examine how kelp communities respond to variable environmental conditions arising from seasonal variability and changing ocean temperature and acidification conditions. As part of this project, undergraduate and high school students will receive comprehensive training through (1) an immersive field-based class in Sitka Sound, Alaska, (2) intensive, mentored research internships, and (3) experiential training in science communication and public outreach that will include a variety of opportunities to disseminate research findings through podcasts, public lectures and radio broadcasts.</p>
<p>Consumer-resource interactions structure food webs and govern ecosystem stability, yet our understanding of how these important interactions may change under future climatic conditions is hampered by the complexity of direct and indirect effects of multiple stressors within and between trophic levels. For example, environmentally mediated changes in nutritional quality and chemical deterrence of primary producers have the potential to alter herbivory rates and energy fluxes between primary producers and consumers, with implications for ecosystem stability. Moreover, the effects of global change on primary producers are likely to depend on other limiting resources, such as light and nutrients, which vary seasonally in dynamic, temperate and high latitude ecosystems. In marine ecosystems at high latitude, climate models predict that ocean acidification will be most pronounced during the winter months, when primary production is limited by light. This project is built around the hypothesis that there could be a mismatch in the energetic demands of primary consumers caused by warming and ocean acidification and resource availability and quality during winter months, with cascading effects on trophic structure and ecosystem stability in the future. Through complementary lab and field experiments, the project team will determine 1) how temperature and carbonate chemistry combine to affect primary consumer bioenergetics across a diversity of species and 2) the indirect effects of ocean acidification and warming on primary consumers via environmentally mediated changes in the availability, nutritional quality and palatability of primary producers across seasons. Using the data from the laboratory and field experiments, the project team will 3) construct a model of the emergent effects of warming and ocean acidification on trophic structure and ecosystem stability in seasonally dynamic, high latitude environments.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
High latitude kelp dynamics
largerWorkCitation
project
eng; USA
oceans
-135.277
-135.273
57.032
57.032
2017-01-01
2019-12-31
SE Alaskan coastal waters
0
BCO-DMO catalogue of parameters from Linear extension measurements of species from two common morphotypes of coralline algae found in Sitka Sound, AK. from 2017 - 2019 (High latitude kelp dynamics project)
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/857162.rdf
Name: year
Units: unitless
Description: <p>year of field deployment; format: YYYY</p>
http://lod.bco-dmo.org/id/dataset-parameter/857163.rdf
Name: season
Units: unitless
Description: <p>season of field deployment (summer vs winter)</p>
http://lod.bco-dmo.org/id/dataset-parameter/857164.rdf
Name: species
Units: unitless
Description: <p>name of species studied</p>
http://lod.bco-dmo.org/id/dataset-parameter/857165.rdf
Name: alg_ID
Units: unitless
Description: <p>numerical ID of individual</p>
http://lod.bco-dmo.org/id/dataset-parameter/857166.rdf
Name: len_um_1
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857167.rdf
Name: len_um_2
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857168.rdf
Name: len_um_3
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857169.rdf
Name: len_um_4
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857170.rdf
Name: len_um_5
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857171.rdf
Name: len_um_6
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857172.rdf
Name: len_um_7
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857173.rdf
Name: len_um_8
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857174.rdf
Name: len_um_9
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857175.rdf
Name: len_um_10
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857176.rdf
Name: len_um_11
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857177.rdf
Name: len_um_12
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857178.rdf
Name: len_um_13
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857179.rdf
Name: len_um_14
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857180.rdf
Name: len_um_15
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857181.rdf
Name: len_um_16
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857182.rdf
Name: len_um_17
Units: um
Description: <p>length measurement from stain to growing edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/857183.rdf
Name: downward_growth
Units: unitless
Description: <p>indication of downward growth (Y = yes; N = no)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
9866
https://darchive.mblwhoilibrary.org/bitstream/1912/27621/1/dataset-857147_coralline-algae-growth__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.857147.1
download
onLine
dataset
<p><strong>Methodology:</strong></p>
<p><strong>Sampling and analytical procedures: </strong>To assess in-situ seasonal changes in coralline algae growth rates, we collected individuals from a crustose coralline algal genus (Crusticorallina painei, C. adhaerens and C. muricata; n=40) and a geniculate coralline species (Bossiella orbigniana; n=40) from a subtidal rocky reef directly adjacent to Harris Is., Sitka Sound, AK (57.032N, 135.273W) in December 2017, July 2018, and January 2019. Crustose individuals targeted for collection were those that had a morphology that could easily be separated from the rocky substrate, often disc-shaped with distinct white growing edges. Geniculate individuals were collected to include the basal holdfast. The individuals were cleaned by removing epiphytic algae and invertebrates with tweezers, and then placed in a 100mg L<sup>-1</sup> concentration of the membrane-permeable live-cell labeling fluorescent dye Calcein for 6h. This dye is absorbed by metabolically active meristematic tissue of the alga at the time of the stain, thus providing a growth benchmark for subsequently added tissue. After staining, each coralline individual (Crusticorallina spp.: a ‘disc’ with at least a 50% intact growing edge; B. orbigniana: a ‘floret’ containing 4-10 apical fronds) was attached to a small PVC stand by using z-spar epoxy putty to affix the older, non-meristematic tissue. Individuals on stands were then outplanted into the field on plates (2 crustose and 2 geniculate indiv. plate<sup>-1</sup>) and bolted onto rocky reef substrate at 10m depth MLLW at the edge of a giant kelp forest at Harris Is (57.032N, 135.277W). Coralline algae were retrieved after 2-3mo, for total outplant durations of 67d (Winter 2018), 66d (Summer 2018), and 103d (Winter 2019).</p>
<p>To measure linear growth, the coralline algae were imaged using a fluorescent lamp channel on a Ziess AxioZoom microscope at the UCSC Microscopy Center. Average growth extension from the original fluorescent stain was calculated for each individual using ImageJ (NIH v1.8.0) by analyzing measurements from up to 13 randomly selected points along the growing edge of the disc (Crusticorallina spp.) or from up to 17 randomly selected apical fronds in the floret (B. orbigniana).&nbsp;</p>
<p><strong>Problem report:</strong></p>
<p>Dataset only includes coralline algae individuals that were 1) not lost in the field, and 2) had sufficient stain uptake to enable measurements of new growth. Crustose coralline individuals that exhibited downward growth (versus primarily lateral growth along the growing edge of the disc) were more difficult to measure for accurate length extension. The parameter name “downward_growth” was used to indicate instances in which this occurred, and these individuals were not included in published analyses.</p>
Specified by the Principal Investigator(s)
<p><strong>Processing notes from researcher:</strong></p>
<p>Length measurements made using ImageJ software on appropriately scaled images taken with a Ziess AxioZoom microscope.</p>
<p><strong>BCO-DMO processing notes:</strong></p>
<p>Numerical fields rounded to maximum level of precision</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Ziess AxioZoom microscope
Ziess AxioZoom microscope
PI Supplied Instrument Name: Ziess AxioZoom microscope PI Supplied Instrument Description:To measure linear growth, the coralline algae were imaged using a fluorescent lamp channel on a Ziess AxioZoom microscope at the UCSC Microscopy Center. Instrument Name: Fluorescence Microscope Instrument Short Name: Instrument Description: Instruments that generate enlarged images of samples using the phenomena of fluorescence and phosphorescence instead of, or in addition to, reflection and absorption of visible light. Includes conventional and inverted instruments. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB06/