19:I[42426,["/_next/static/immutable/chunks/1xctgzqre-wsy.js","/_next/static/immutable/chunks/06_-wz6pdtp2b.js","/_next/static/immutable/chunks/30e52g49hg40p.js","/_next/static/immutable/chunks/02yq6tul2z-oh.js","/_next/static/immutable/chunks/10bx_ec2vj7n_.js","/_next/static/immutable/chunks/33bfn03fo8xnt.js","/_next/static/immutable/chunks/0tfjf78scu61b.js","/_next/static/immutable/chunks/31xnvej4n1bi9.js"],"default"] 1a:T5d6,

Hydroacoustic surveys were conducted at three well known artificial reefs in Jupiter, Florida (approximately: 27N, 80W). Sites include MG111 Barge and Warriors Reef (referred to as “mg” in data files), Sun Mariner Tugboat (referred to as “sun” in data files), and the Wreck Train complex (Zion, Miss Jenny, and Esso Bonaire) (referred to as “wrt” in data files). Surveys consisted of 20 350m long evenly spaced (10m) parallel transects.

Two Simrad split-beam echosounders (ES38-10 and ES 120-7C) were towed at approximately 2.5m s-1 on a custom built towfish, approximately 12m behind the research vessel (7m center console). GPS position is referenced at the center of the research vessel, but the correction has not been applied to these data. The distance between echosounders and antenna is approximately 15.5m.

Data were collected in Continuous Wave (pulse duration: 0.256µs, sampling interval: 10Hz) and Frequency Modulation (pulse duration: 2.048µs, sampling interval: 10Hz) modes at 38kHz (FM: 35-45kHz) and 120kHz (FM: 90-170kHZ) between 31 August and November 29, 2020. Data from 31 August to 15 October were collected in CW, and data from 30 October to 29 November were collected in FM. Echosounders were calibrated using standard techniques described by Demer et al. (2015).

Surveys were conducted biweekly during peak new and full moon periods. Missing surveys are attributed to power supply malfunctions and periods of inclement weather.

1b:T7d1,

Data were processed in Echoview 11.1.34 (Echoview Software Pty Ltd). Exported survey data were merged into four master survey files based on frequency (38/120kHZ) and collection mode (CW/FM). Files included are “cw38_2020_repos.csv”, “cw120_2020_repos.csv”, “fm38_2020_repos.csv”, and “fm120_2020_repos.csv”.

CW processing: Bottom and surface exclusion regions were first applied to remove bad data. Impulsive noise and background noise removal algorithms were then used to remove interference produced by the boat and electrical systems based on the techniques presented by Ryan et al. (2015) and De Robertis & Higginbottom (2007). The default Echoview settings were used. Impulse noise was evaluated based using three consecutive pings, and ten samples in the vertical domain. Data were removed if an adjacent region was >10dB greater or less than the reference region. Background noise was evaluated based on 20 consecutive pings, and five samples in the vertical domain. The maximum noise threshold was set to -125dB and the signal-to-noise ratio was set to 10.0. Those samples that did not mee the criteria were excluded. Data were then divided into 5m vertical by 5m horizontal cells and exported as .csv files.

FM processing: Bottom and surface exclusion regions were first applied to remove bad data. Data were then divided into 5m vertical by 5m horizontal cells. No further processing was completed.

Additional dataset description: Each row represents a 5m vertical x 5m horizontal cell along the transect. Individual cells can be identified by interval and layer. “_M” indicates mean for the respective variable. For example, “Time_M” is the mean time within interval “x”, and “Lat_M” is the mean latitude within interval “x”.

BCO-DMO processing notes:

merged all 4 datasets into 1 file
converted data to ISO_DateTime_UTC

1c:T928,NSF Award Abstract: Many species of reef fish form large seasonal gatherings at specific locations to spawn. Such aggregations may lead to population overfishing if not well managed. Additionally, spawning aggregations in shallow coastal areas may also be susceptible to prolonged surge, high volumes of freshwater run-off and potentially changes in salinity associated with large storms and tropical cyclones. Yet, the impact from such events, which are becoming increasingly prevalent, has not been studied. This study investigates the impacts of hurricane Dorian on spawning activity of the endangered goliath grouper (Epinephelus itajara) fish species off the southeast coast of Florida. The broader impacts of the project relate to its value to inform fisheries management plans for goliath grouper. The project supports two early career faculty members and training of a postdoctoral researcher, a graduate student, and several undergraduate students at Florida International University. Hurricane Dorian occurred at the peak of goliath grouper's spawning aggregation in Florida's shallow waters. This project takes advantage of ongoing acoustic surveys since 2017, telemetry, biophysical modelling, and behavioral studies of goliath grouper at spawning sites to assess how hurricane Dorian: 1) influenced the duration of spawning events and the size of aggregations, 2) affected individual residency to spawning sites and spawning behavior, 3) changed the dispersal patterns of goliath grouper larvae and identify nursery habitats with/without storm or hurricane events, and 4) influenced trophic cascades at the reef ecosystem level due to goliath grouper spawning aggregations as determined by changes on lower trophic level foraging rates and the subsequent changes to the benthos. The combination of methods provide insight into how storms affects spawning behavior from the individual to the group level, and how subsequent larval recruitment may be influenced. Finally, this project tests the utility of acceleration sensors for identifying spawning behavior in free ranging fishes, which will be of major significance to spawning studies across taxa. This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.6:["$","$L19",null,{"dataset":{"_id":"858599","description":"

Data have been published “as is”. Final review by the data submitter was not received after it was imported into the BCO-DMO data system.

\n","problem":"","acquisition":"$1a","processing":"$1b","bcodmoProcessing":"","title":"Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020.","nickname":"Hydroacoustic Survey Data 2020","dataUrl":"","currentState":"Final no updates expected","currentStateId":"7","validated":false,"restricted":false,"version":"1","version_date":"2023-01-27T05:00:00.000Z","abstract":"Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020.","citation":"Papastamatiou, Y. (2023) Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-01-27 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.858599.1 [access date]","citationParts":{"identifier":"doi:10.26008/1912/bco-dmo.858599.1","versionDate":"2023-01-27","versionId":"1","year":"2023","title":"Echosounder data from goliath grouper aggregations in Jupiter, FL from August 31 until November 30, 2020.","authors":"Papastamatiou, Y.","publisher":"Biological and Chemical Oceanography Data Management Office (BCO-DMO)."},"doi":"10.26008/1912/bco-dmo.858599.1","release_date":null,"field_dataset_location":"","temporal_extent":{"start":"2020-08-30T04:00:00.000Z","end":"2020-11-29T05:00:00.000Z"},"temporal":{"resolution":"time:unitDay","type":"time:Interval","start":{"value":"1598760000","label":"2020-08-30"},"end":{"value":"1606626000","label":"2020-11-29"}},"spatial_extent":{"shape":"polygon","center":{"latitude":26.970328115357,"longitude":-80.017576735902},"wkt":"POLYGON ((-80.03035344 26.95842445, -80.0048 26.95842445, -80.0048 26.98223177, -80.03035344 26.98223177, -80.03035344 26.95842445))","north":26.98223177,"east":-80.0048,"south":26.95842445,"west":-80.03035344},"dataset_type":["Other Field Results"],"keywords":["oceans"],"data_files":[{"id":"903457","title":"hydroacoustics_all.csv","url":"https://datadocs.bco-dmo.org/dataset/858599/file/qAAoq8ZiOgMlmo/hydroacoustics_all.csv","showTableUrl":"https://www.bco-dmo.org/dataset/858599/data/view/903457","description":"Primary data file for dataset ID 858599","filename":"hydroacoustics_all.csv","bytesize":86120185,"checksum":{"value":"1ec495f8d4707806b23707f9a4ddddb8","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":true,"showTable":true,"restricted":false}],"supplemental_files":[],"roles":[{"role":{"_id":"138","name":"Principal Investigator"},"performedBy":{"_id":"825400","name":"Yannis Papastamatiou"},"performedAtOrganization":{"_id":"331","name":"Florida International University"}},{"role":{"_id":"133","name":"Contact"},"performedBy":{"_id":"825400","name":"Yannis Papastamatiou"},"performedAtOrganization":{"_id":"331","name":"Florida International University"}},{"role":{"_id":"145","name":"BCO-DMO Data Manager"},"performedBy":{"_id":"748773","name":"Karen Soenen"},"performedAtOrganization":{"_id":"191","name":"Woods Hole Oceanographic Institution"}}],"deployments":[],"funding":[{"_id":"825392","name":"OCE-2006293","fundingSource":{"_id":"355","name":"NSF Division of Ocean Sciences"},"url":"https://www.nsf.gov/awardsearch/show-award?AWD_ID=2006293"},{"_id":"825393","name":"OCE-2006295","fundingSource":{"_id":"355","name":"NSF Division of Ocean Sciences"},"url":"https://www.nsf.gov/awardsearch/show-award?AWD_ID=2006295"}],"instruments":[{"_id":"864198","name":"Simrad EK80 Scientific Wideband Transceivers","description":"Simrad EK80 Scientific Wideband Transceivers were used with Simrad ES38-10 and ES120-7C Splitbeam echosounders. Echosounders were calibrated using standard techniques described by Demer et al. (2015).","type_id":"864196","type_name":"Simrad EK80 echo sounder","type_desc":"A high precision scientific echo sounder, designed to simultaneously operate frequencies ranging from 10 to 500 kHz. EK80 is a modular echo sounder system, and can operate with a combination of split and single beam transducers facilitated by a built-in calibration application. This system was built in succession to the EK60 echo sounder.","type_acronym":"EK80"},{"_id":"864195","name":"Simrad ES38-10 and ES120-7C Splitbeam echosounders","description":"Simrad ES38-10 and ES120-7C Splitbeam echosounders. Echosounders were calibrated using standard techniques described by Demer et al. (2015).","type_id":"622","type_name":"Split-Beam Echosounder","type_desc":"\"The split-beam echosounder has a transducer which is divided into four quadrants.The target direction is determined by comparing the signals received by each quadrant... The transmission pulse is applied to the whole transducer but the signals received by each quadrant are processed separately...The target strength is estimated from the transducer sensitivity in the relevant direction, namely the beam pattern and the on-axis sensitivity.\" From \"Fisheries Acoustics: Theory and Practice\" by E. John Simmonds, D. N. MacLennan, Wiley-Blackwell; 2 edition.","type_acronym":"Splitbeam Echosounder"}],"parameters":[{"_id":"864211","name":"Collection_Mode","format":"","frictionlessType":"string","description":"

Continuous Wave (pulse duration: 0.256µs, sampling interval: 10Hz) and Frequency Modulation (pulse duration: 2.048µs, sampling interval: 10Hz)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"864212","name":"Frequency","format":"","frictionlessType":"integer","description":"

Frequency mode: 38kHz (FM: 35-45kHz) and 120kHz (FM: 90-170kHZ)

","units":{"_id":"","name":"kHz"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"864213","name":"Interval","format":"","frictionlessType":"string","description":"

Represents a 5m wide column along transect

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"864214","name":"Layer","format":"","frictionlessType":"integer","description":"

Represents a 5m high layer in the water column

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"864215","name":"Sv_mean","format":"","frictionlessType":"number","description":"

Mean Volume Back Scattering Strength

","units":{"_id":"","name":"dB re 1m-1"},"type":{"_id":"716036","name":"Acc_bksctr","description":"

Includes all parameters covering the strength of acoustic signal return, including absolute measurements of returning signal strength as well as parameters expressed as backscatter (the proportion of transmitted signal returned)

"}},{"_id":"864216","name":"NASC","format":"","frictionlessType":"number","description":"

Nautical Area Scattering Coefficient

","units":{"_id":"","name":"m2 nmi-2"},"type":{"_id":"716036","name":"Acc_bksctr","description":"

"}},{"_id":"864217","name":"Depth_mean","format":"","frictionlessType":"number","description":"

Depth of 5m x 5m cel

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"808","name":"depth","description":"

Observation/sample depth below the sea surface. Units often reported as: meters, feet.

\nWhen used in a JGOFS/GLOBEC dataset the depth is a best estimate; usually but not always calculated from pressure; calculated either from CTD pressure using Fofonoff and Millard (1982; UNESCO Tech Paper #44) algorithm adjusted for 1980 equation of state for seawater (EOS80) or simply equivalent to nominal depth as recorded during sampling if CTD pressure was unavailable.

"}},{"_id":"864218","name":"Date_M","format":"%Y%m%d","frictionlessType":"date","description":"

Date of surv

","units":{"_id":"","name":"unitless"},"type":{"_id":"1070","name":"date","description":"

date; generally reported in GMT as YYYYMMDD (year; month; day); also as MMDD (month; day); EqPac dates are local Hawaii time. ISO_Date format is YYYY-MM-DD (http://www.iso.org/iso/home/standards/iso8601.htm)

"}},{"_id":"864219","name":"Time_M","format":"%H:%M:%S.%f","frictionlessType":"time","description":"

24hr format, UTC

","units":{"_id":"","name":"unitless"},"type":{"_id":"1075","name":"time","description":"

Time GMT defined as HHMM; time of day; generally reported in GMT as HHMM (hours and minutes) but may also be HH.H (decimal hours) or HHMMSS (hours; minutes and seconds); in EqPac time is reported as Hawaii local time

"}},{"_id":"864220","name":"Lat_M","format":"","frictionlessType":"number","description":"

Mean latitude within a cell

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"730","name":"latitude","description":"

latitude, in decimal degrees, North is positive, negative denotes South; Reported in some datasets as degrees, minutes

"}},{"_id":"864221","name":"Lon_M","format":"","frictionlessType":"number","description":"

Mean longitude within a cell

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"731","name":"longitude","description":"

longitude, in decimal degrees, East is positive, negative denotes West; Reported in some datasets as degrees, minutes

"}},{"_id":"864222","name":"Beam_volume_sum","format":"","frictionlessType":"number","description":"

Volume of cell determined by echosounder opening angle and depth

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"542214","name":"volume","description":"

The amount of 3-dimensional space an object occupies. Capacity.
\nAs in the volume of the tank or container used in a laboratory experiment.

"}},{"_id":"864223","name":"Source","format":"","frictionlessType":"string","description":"

Survey ID provides site code, date, and survey period (day/night)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1741","name":"sample_descrip","description":"

text description or other traits of the sample collected

"}},{"_id":"864224","name":"ISO_DateTime_UTC","format":"%Y-%m-%dT%H:%M:%S.%fZ","frictionlessType":"datetime","description":"

description

","units":{"_id":"","name":"units"},"type":{"_id":"1908","name":"ISO_DateTime_UTC","description":"

Date/Time (UTC) ISO formatted
\nThis standard is based on ISO 8601:2004(E) and takes on any of the following forms:
\n2009-08-30T09:05:00[.xx] (local time)
\n2009-08-30T14:05:00[.xx]Z (UTC time)
\n2009-08-30T14:05:00[.xx]-05:00
\nThe dashes and the colons can be dropped.
\nThe T can also be dropped \"by mutual agreement\", but one needs the trailing Z if the time is UTC.

Sample ISO_datetime_utc:
\n2009-08-30T14:05:00[.xx]Z (UTC time)

Format: YYYY-mm-ddTHH:MM:SS[.xx]Z (UTC time)

"}}],"related_publications":[{"id":"858652","citation":"De Robertis, A., & Higginbottom, I. (2007). A post-processing technique to estimate the signal-to-noise ratio and remove echosounder background noise. ICES Journal of Marine Science, 64(6), 1282–1291. doi:10.1093/icesjms/fsm112\r\n","relation_type":["Methods"],"relation_desc":""},{"id":"858651","citation":"Demer, D. A.; Berger, L.; Bernasconi, M.; Bethke, E.; Boswell, K.; Chu, D.; Domokos, R. Et Al. (2015). Calibration of acoustic instruments. <i>ICES</i>. https://doi.org/10.17895/ICES.PUB.5494","relation_type":["Methods"],"relation_desc":""},{"id":"858653","citation":"Ryan, T. E., Downie, R. A., Kloser, R. J., & Keith, G. (2015). Reducing bias due to noise and attenuation in open-ocean echo integration data. ICES Journal of Marine Science, 72(8), 2482–2493. doi:10.1093/icesjms/fsv121\r\n","relation_type":["Methods"],"relation_desc":""}],"related_datasets":[],"services":[{"grouping":"","items":[{"name":"View Data","description":"An in-browser view of the primary tabular data file","url":"https://www.bco-dmo.org/dataset/858599/data/view","contentType":"text/html","actionType":"view"}]},{"grouping":"Metadata","items":[{"name":"HTML","description":"A simple HTML page of the dataset metadata","url":"https://www.bco-dmo.org/dataset/858599/description","contentType":"text/html","actionType":"view"},{"name":"PDF","description":"A PDF of the HTML dataset metadata","url":"https://www.bco-dmo.org/dataset/858599/Dataset_description.pdf","contentType":"application/pdf","actionType":"download"},{"name":"ISO 19115-2 (NOAA Profile)","description":"","url":"https://www.bco-dmo.org/dataset/858599/iso","contentType":"application/xml","actionType":"download"}]}],"programs":[],"projects":[{"_id":"825391","name":"Collaborative Research: RAPID: Storm and tropical cyclone effects on the spawning activity, larval dispersal, and ecosystem impacts of an endangered marine predator","acronym":"Storm effect on predator","description":"$1c"}],"archives":[{"id_value":"10.26008/1912/bco-dmo.858599.1","url":"https://doi.org/10.26008/1912/bco-dmo.858599.1","date_assigned":"2023-01-27","version_date":"2023-01-27","archiver":"Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)","archiver_id":"272"}],"license":{"name":"Creative Commons Attribution 4.0","id":"CC-BY-4.0","uri":"https://creativecommons.org/licenses/by/4.0/","spdxUri":"https://spdx.org/licenses/CC-BY-4.0"},"metrics":{"views":{"count":144},"downloads":{"count":336}}}}]