Oxygen data from 12 Wire Flyer deployments conducted on R/V Sikuliaq cruise SKQ201701S in the Eastern Tropical North Pacific from January to February 2017

Website: https://www.bco-dmo.org/dataset/859905
Data Type: Cruise Results
Version: 1
Version Date: 2021-09-01

Project
» Collaborative Research: A metabolic index to predict the consequences of climate change for midwater ecosystems (Metabolic Index)
ContributorsAffiliationRole
Roman, Christopher NeilUniversity of Rhode Island (URI)Principal Investigator
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset includes oxygen data from 12 Wire Flyer deployments conducted on R/V Sikuliaq cruise SKQ201701S in the Eastern Tropical North Pacific from January to February 2017.


Coverage

Spatial Extent: N:22.604527 E:-117.009013 S:21.222495 W:-118.591761
Temporal Extent: 2017-01-25 - 2017-02-12

Methods & Sampling

Data were collected on R/V Sikuliaq cruise SKQ201701S in the Eastern Tropical North Pacific during January and February 2017. The data have not been corrected for any time lags. Oxygen data are from an Aanderaa Optode 4831F. See the accompanying sensor manual (PDF) for the field details.

The Wire Flyer position was calculated using measurements of the clump weight depth and the wire payout. The layback distance is the Flyer’s distance behind the ship. Refer to the Supplemental Files for more information on the Wire Flyer.

Known Problems/Issues:
There is a time lag in the data due to the sensor's foil response. This is noticeable on adjacent profiles, with similar O2 values appearing at different depths. The data can be lag shifted 5-7 seconds to remove most of the offset.


Data Processing Description

BCO-DMO Processing:
- concatenated data from 12 separate files into one dataset;
- replaced "NaN" with "nd" (no data);
- created new column "deployment_id" (based on original file name);
- converted date/time field to ISO8601 format.


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Data Files

File
O2_2017.csv
(Comma Separated Values (.csv), 61.58 MB)
MD5:0ecc7dae80e1083ee946e0ea95790286
Primary data file for dataset ID 859905

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Supplemental Files

File
SKQ201701S Wire Flyer Summary Plots
filename: summary_plots.zip
(ZIP Archive (ZIP), 16.49 MB)
MD5:81e1ebe72d60bf253110a9aa93a5fc21
Summary plots of data from 12 Wire Flyer deployments conducted on R/V Sikuliaq cruise SKQ201701S. There is one PDF for each deployment. The file naming convention is YYYYMMDD_HHMMSS, set at the start of the deployment, e.g. 20170125_151748. The times are all in GMT, not local time.
TD 269 OPERATING MANUAL OXYGEN OPTODE 4330, 4835, 4831
filename: TD269v5_Operating_manual_Oxygen_Optode_4330_4835_and_4831.pdf
(Portable Document Format (.pdf), 5.72 MB)
MD5:7a18b2248d363da076eedb61e2aed965
Operating manual for Aanderaa oxygen optodes 4330, 4835, and 4831.
Wire Flyer Launch and Recover Document
filename: flyer_launch_and_recover_document.pdf
(Portable Document Format (.pdf), 7.26 MB)
MD5:f9274b8c8b003b9a39083191e4f2c76b
Document describing the Wire Flyer launch and recovery procedures.
Wire Flyer Overview 2019
filename: Wire_flyer_overview_2019.pdf
(Portable Document Format (.pdf), 15.84 MB)
MD5:7c3c14f839142f115c5aa467894395d7
Slides from a presentation by Christopher Roman titled "The Wire Flyer vehicle system and
high resolution hydrographic sections".

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Related Publications

Roman, C., Ullman, D. S., Hebert, D., & Licht, S. (2019). The Wire Flyer Towed Profiling System. Journal of Atmospheric and Oceanic Technology, 36(2), 161–182. doi:10.1175/jtech-d-17-0180.1
Methods
Wishner, K. F., Seibel, B. A., Roman, C., Deutsch, C., Outram, D., Shaw, C. T., … Riley, S. (2018). Ocean deoxygenation and zooplankton: Very small oxygen differences matter. Science Advances, 4(12), eaau5180. doi:10.1126/sciadv.aau5180
Results

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Parameters

ParameterDescriptionUnits
deployment_ididentifier for the deployment; indicates the start date and time of deployment in format: YYYYMMDD_hhmmss (time zone is GMT) unitless
AirSaturationair saturation (%) relative to the nominal air pressure unitless (percent)
C2Ampamplitude measurement with red excitation light millivolts (mV)
Temperaturetemperature degrees Celsius
C2RPhphase measurement with red excitation light degrees
TCPhasetemperature compensated phase degrees
timestamptime stamp in microunix seconds microunix seconds
C1RPhphase measurement with blue excitation light degrees
O2Concentrationpartial pressure of dissolved oxygen in water micromoles per liter
C1Ampamplitude measurement with blue excitation light millivolts (mV)
CalPhasecalibrated phase degrees
RawTempvoltage from thermistor bridge millivolts (mV)
datestringdate-time string (GMT) in format where xxx represent milliseconds: YYYY-MM-DD hh:mm:ss.xxx unitless
ISO_DateTime_UTCdate-time string converted to ISO8601 format: YYYY-MM-DDThh:mm:ss.xxxxxxZ. Note that data are accurate to milliseconds (not microseconds) unitless
latLatitude. This is either the ship or the flyer position, but it is the best position available. If the Flyer position was known, accounting for the tow cable, this is the value used here. If the flyer position was not known (e.g. maybe the winch cable counter failed), the ship position was recorded. degrees North
lonLongitude. This is either the ship or the flyer position, but it is the best position available. If the Flyer position was known, accounting for the tow cable, this is the value used here. If the flyer position was not known (e.g. maybe the winch cable counter failed), the ship position was recorded degrees East


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Instruments

Dataset-specific Instrument Name
Wire Flyer
Generic Instrument Name
Wire Flyer Towed Profiling System
Generic Instrument Description
Description from Roman et al. (2019): The Wire Flyer towed vehicle is a platform able to collect high-resolution water column sections. The vehicle is motivated by a desire to effectively capture spatial structures at the submesoscale. The Wire Flyer profiles up and down along a ship-towed cable autonomously using controllable wings for propulsion. At ship speeds between 2 and 5 kt (1.02–2.55 m s−1), the vehicle is able to profile over prescribed depth bands down to 1000 m. The vehicle carries sensors for conductivity, temperature, depth, oxygen, turbidity, chlorophyll, pH, and oxidation reduction potential. During normal operations, the vehicle is typically commanded to cover vertical regions between 300 and 400 m in height with profiles that repeat at kilometer spacing. The vertical profiling speed can be user-specified up to 150 m min−1. During operations, an acoustic modem is used to communicate with the vehicle to provide status information, data samples, and the ability to modify the sampling pattern.   Detailed information can be found in the following publication: Roman, C., Ullman, D. S., Hebert, D., & Licht, S. (2019). The Wire Flyer Towed Profiling System. Journal of Atmospheric and Oceanic Technology, 36(2), 161–182. doi:10.1175/jtech-d-17-0180.1

Dataset-specific Instrument Name
Aanderaa Optode 4831F
Generic Instrument Name
Aanderaa 4831F (fast-response) oxygen optode
Dataset-specific Description
Oxygen data are from an Aanderaa Optode 4831F.
Generic Instrument Description
A stand-alone oxygen optode with integrated temperature sensor, manufactured by Aanderaa. This instrument exploits the physio-chemical principle of dynamic fluorescence quenching to measure absolute oxygen concentration and percent saturation. Depth rating: 300 m, 3000 m or 6000 m; oxygen concentration accuracy of < 8 uM or 5 %, and resolution of < 1 uM; air saturation accuracy of < 5 %, and resolution of 0.4 %; response time (63 %): < 8 s.


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Deployments

SKQ201701S

Website
Platform
R/V Sikuliaq
Start Date
2017-01-19
End Date
2017-02-15
Description
See additional cruise information from R2R: https://www.rvdata.us/search/cruise/SKQ201701S


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Project Information

Collaborative Research: A metabolic index to predict the consequences of climate change for midwater ecosystems (Metabolic Index)

Coverage: Eastern Tropical North Pacific


Description from NSF award abstract:
With climate change, ocean temperatures are expected to increase which in turn will reduce oxygen availability and increase metabolic oxygen demand in marine organisms. The investigators will conduct shipboard physiological experiments for various marine organisms and determine their distributions in relation to environmental conditions within an oxygen minimum zone (OMZ) in the Eastern Pacific Ocean. The goal will be to model and map a Metabolic Index (MI) to predict how vertical and horizontal distributions for these species might change throughout the world's oceans in the future. The MI is defined as the ratio between environmental oxygen supply and temperature-dependent oxygen demand. Oxygen supply includes both the environmental oxygen concentration across a habitat range and the physiological features of organisms that facilitate oxygen uptake, such as gills and circulatory systems. Thus, the MI will integrate measured tolerance and environmental exposure to low oxygen with environmental data. The investigators will measure tolerance to low oxygen, focusing on under-studied organisms, including the effect of temperature and organism size. They will sample along a natural gradient in oxygen content south of the California Current in the Eastern Pacific. The science team and a videographer will develop a blog about deep-sea biology and climate change using web-based and video technologies. Four graduate students will be funded on this project, and in conjunction with a recently developed course in pelagic ecology, several undergraduates will have the opportunity to participate in seagoing research.

This research fills a critical need for a physiology-based metric that can be used to predict changing marine communities as the oceans warm and hypoxic zones expand. Modern OMZs are extensive and characterized by deep-water (300-800 m) oxygen partial pressures lethal to most marine organisms, yet thriving communities exist there. Climate change is predicted to further deplete oxygen. The investigators will model and map a Metabolic Index (MI) for diverse marine species to help predict how in vertical and horizontal distributions of species may change throughout the world's oceans in the future. The MI will derive oxygen supply and demand data from published and planned measurements of the minimum environmental partial pressure of oxygen to which individual species are exposed (based on their distributions in the water column) and the minimum requirements to support routine aerobic metabolic demand (from shipboard respiration measurements of individuals). During research cruises in the Eastern Pacific along a gradient of OMZ intensity, the investigators will conduct shipboard physiological measurements to determine metabolic demand for understudied mesozooplankton and gelatinous taxa and determine the size- and temperature dependence for diverse species for incorporation into the MI. Vertically-stratified net sampling and in situ photography will identify and characterize unique OMZ community features, such as the lower oxycline biomass peak present in some OMZs and the oxygen-dependence of day and night habitat depths for vertically-migrating species. The MI will be mapped using climatological data to both test and generate hypotheses about the response of oceanic communities to climate change. In preliminary analysis, the MI suggests a metabolic constraint at a MI of ~2 that may act to limit vertical and horizontal habitat ranges.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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