http://lod.bco-dmo.org/id/dataset/862410
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-10-04
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Benthic cover quadrat observations and photos from the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City, 2014-2017
2022-11-08
publication
2022-11-08
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2022-11-29
publication
https://doi.org/10.26008/1912/bco-dmo.862410.1
Malin Pinsky
Rutgers University
principalInvestigator
Michelle Stuart
Rutgers University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Pinsky, M., Stuart, M. (2022) Benthic cover quadrat observations and photos from the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City, 2014-2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-11-08 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.862410.1 [access date]
Dataset Description: <p>Example quadrat photo.&nbsp; See "Data Files" section to access the full set of quadrat photos bundled in zip files by year.<br />
<img alt="" src="https://datadocs.bco-dmo.org/file/xov91MLuMyyLm/IMG_1603.JPG" style="width:600px" /><br />
[Example image&nbsp;<span style="font-size:13px">IMG_1603.JPG is also included in the file bundle&nbsp;2014_quadrat_photos.zip]</span><br />
<br />
See Related Datasets and Supplemental Files sections for other data collected as part of the same transect and quadrat surveys.</p> Methods and Sampling: <p>Photoquadrat framer&nbsp;constructed from PVC pipe, PVC cement, galvanized bolts, wing nuts, and washers.&nbsp; Quadrat was 50 x 50 cm.<br />
<br />
<strong>Benthic quadrat procedure:</strong></p>
<p>- records dive and transect attributes:<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - dive number<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - transect number<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - site name<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - date<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - time<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - observer initials<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - visibility (meters)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - depth at start of transect (feet)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - depth at end of transect (feet)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - transect length (meters)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - quadrat number</p>
<p>- places 5 quadrats in fixed or random locations along transect<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - random locations were selected prior to the start of the transect<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - fixed locations were returned to each year<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - nails were driven into the reef the first year to mark locations<br />
- observes and records the primary benthic cover within the quadrat<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - family of invertebrate or abiotic benthic cover<br />
- measures rugosity within the quadrat using the chain method.&nbsp;Rugosity was measured with a 6 m chain. (See EPA Field Manual for Coral Reef Assessments,&nbsp;Santavy et al. (2012).<br />
- records any additional notes<br />
- takes photo and records photo file number<br />
<br />
<strong>Issue report:</strong></p>
<p>Some photos could not be taken if the reef was too shallow and the camera was above water.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1430218 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1430218
completed
Malin Pinsky
Rutgers University
848-932-8242
14 College Farm Rd.
New Brunswick
NJ
08901
USA
malin.pinsky@rutgers.edu
pointOfContact
Michelle Stuart
Rutgers University
(848) 932-5515
ENR 168 14 College Farm Rd
New Brunswick
NJ
08901
USA
michelle.stuart@rutgers.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
DiveNum
TransectNum
Site
Date
Time
Observer
Vis_m
Heading
Depth_start_ft
Depth_end_ft
Length_m
Quadrat_num
Position_m
Cover_1
Cover_2
Cover_3
Cover_4
Cover_5
Rugosity_m
Notes
Image_nums
ISO_DateTime_UTC
Canon Rebel T5i
theme
None, User defined
dive_id
transect
site
date_local
time_local
person name
visibility
heading
depth
length
site description
comments
sample description
ISO_DateTime_UTC
featureType
BCO-DMO Standard Parameters
Underwater Camera
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
https://osprey.bco-dmo.org/project/554706
RAPID: Mega-typhoon impacts on the metapopulation resilience of coral reef fishes
<p><em>Description from NSF award abstract:</em><br />
When Typhoon Haiyan hit the Philippines it had sustained winds of 305 to 315 kph and was the strongest storm ever to make landfall. Storms are one of the most important disturbances to coral reef ecosystems. Previous research has primarily emphasized that habitat recovery is important for the recovery of reef fish communities after disturbance. We understand little, however, about the role of larval dispersal in mediating species responses to disturbance. Reef fish function as metapopulations connected by larval dispersal among reefs, and larval connectivity is therefore a critical process for their dynamics. A field site directly in Typhoon Haiyan's path provides an ideal opportunity to address the role of larval dispersal during recovery. Over the course of four field seasons (2008 to 2013), nearly two thousand clownfish were surveyed along 20km of coastline. Clownfish possess the same basic life history as most reef fish (sedentary adults and pelagic larvae), but are sufficiently rare and visible that genetic parentage methods can be used to follow larval dispersal. This study site is therefore a unique location in which to understand the metapopulation impacts of a massive storm. This project will focus on three hypotheses: 1) Habitat destruction determines the short-term impacts of storms disturbance, 2) Metapopulation processes shape recolonization after disturbance, and 3) Disturbance allows rare competitors to increase in abundance. The project will address these questions with a combination of fixed and random transects to assess reef habitat and reef fish abundance and diversity, as well as detailed, spatially explicit surveys of anemones and clownfish. Genetic mark-recapture and parentage methods with yellowtail clownfish will pinpoint the origin of new recruits that recolonize the reef post-typhoon.</p>
Reef Fish Resilience
largerWorkCitation
project
eng; USA
oceans
124.711
124.787
10.6335
10.8743
2014-06-08
2017-05-11
West coast of Leyte Island, Visayas, Philippines
0
BCO-DMO catalogue of parameters from Benthic cover quadrat observations and photos from the West coast of Leyte, the Philippines in the municipalities of Albuera and Bay Bay City, 2014-2017
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/883360.rdf
Name: DiveNum
Units: unitless
Description: <p>Dive Number</p>
http://lod.bco-dmo.org/id/dataset-parameter/883361.rdf
Name: TransectNum
Units: unitless
Description: <p>Transect number</p>
http://lod.bco-dmo.org/id/dataset-parameter/883362.rdf
Name: Site
Units: unitless
Description: <p>Site name (fixed (permanent) or random indicated by a P or R, respectively)</p>
http://lod.bco-dmo.org/id/dataset-parameter/883363.rdf
Name: Date
Units: unitless
Description: <p>Date of dive (local time zone UTC+08:00)</p>
http://lod.bco-dmo.org/id/dataset-parameter/883364.rdf
Name: Time
Units: unitless
Description: <p>Time of dive (local time zone UTC+08:00)</p>
http://lod.bco-dmo.org/id/dataset-parameter/883365.rdf
Name: Observer
Units: unitless
Description: <p>observer initials (First_Last)</p>
http://lod.bco-dmo.org/id/dataset-parameter/883366.rdf
Name: Vis_m
Units: meters (m)
Description: <p>Visibility</p>
http://lod.bco-dmo.org/id/dataset-parameter/883367.rdf
Name: Heading
Units: degrees
Description: <p>compass orientation travelled on the transect. degrees (0-360)</p>
http://lod.bco-dmo.org/id/dataset-parameter/883368.rdf
Name: Depth_start_ft
Units: feet
Description: <p>depth at start of transect</p>
http://lod.bco-dmo.org/id/dataset-parameter/883369.rdf
Name: Depth_end_ft
Units: feet
Description: <p>depth at end of transect</p>
http://lod.bco-dmo.org/id/dataset-parameter/883370.rdf
Name: Length_m
Units: meters (m)
Description: <p>transect length</p>
http://lod.bco-dmo.org/id/dataset-parameter/883371.rdf
Name: Quadrat_num
Units: unitless
Description: <p>order of quadrat placed</p>
http://lod.bco-dmo.org/id/dataset-parameter/883372.rdf
Name: Position_m
Units: meters (m)
Description: <p>position along the transect length</p>
http://lod.bco-dmo.org/id/dataset-parameter/883373.rdf
Name: Cover_1
Units: unitless
Description: <p>Primary cover #1 within the quadrat. A period symbol "." in this column indicates there was no coral. A question mark indicates "could not determine." Columns Cover_1,Cover_2,Cover_3,Cover_4,Cover_5 represent the dominant cover types (up to five) within the quadrat. </p>
http://lod.bco-dmo.org/id/dataset-parameter/883374.rdf
Name: Cover_2
Units: unitless
Description: <p>Primary cover #2 within the quadrat. A period symbol "." in this column indicates there was no coral. A question mark indicates "could not determine." Columns Cover_1,Cover_2,Cover_3,Cover_4,Cover_5 represent the dominant cover types (up to five) within the quadrat. </p>
http://lod.bco-dmo.org/id/dataset-parameter/883375.rdf
Name: Cover_3
Units: unitless
Description: <p>Primary cover #3 within the quadrat. A period symbol "." in this column indicates there was no coral. A question mark indicates "could not determine." Columns Cover_1,Cover_2,Cover_3,Cover_4,Cover_5 represent the dominant cover types (up to five) within the quadrat. </p>
http://lod.bco-dmo.org/id/dataset-parameter/883376.rdf
Name: Cover_4
Units: unitless
Description: <p>Primary cover #4 within the quadrat. A period symbol "." in this column indicates there was no coral. A question mark indicates "could not determine." Columns Cover_1,Cover_2,Cover_3,Cover_4,Cover_5 represent the dominant cover types (up to five) within the quadrat. </p>
http://lod.bco-dmo.org/id/dataset-parameter/883377.rdf
Name: Cover_5
Units: unitless
Description: <p>Primary cover #5 within the quadrat. A period symbol "." in this column indicates there was no coral. A question mark indicates "could not determine." Columns Cover_1,Cover_2,Cover_3,Cover_4,Cover_5 represent the dominant cover types (up to five) within the quadrat. </p>
http://lod.bco-dmo.org/id/dataset-parameter/883378.rdf
Name: Rugosity_m
Units: meters (m)
Description: <p>rugosity along transect. An X in the rugosity column means rugosity was not recorded at that station.</p>
http://lod.bco-dmo.org/id/dataset-parameter/883379.rdf
Name: Notes
Units: unitless
Description: <p>transect notes</p>
http://lod.bco-dmo.org/id/dataset-parameter/883380.rdf
Name: Image_nums
Units: unitless
Description: <p>image file number</p>
http://lod.bco-dmo.org/id/dataset-parameter/883381.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>Timestamp with timezone in ISO 8601 format (UTC)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3559301090
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/1/2017_quadrat_photos.zip
download
393058743
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/2/2016_quadrat_photos.zip
download
1604042117
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/3/2015_05_quadrat_photos.zip
download
1113633990
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/4/2015_01_quadrat_photos.zip
download
5786511345
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/5/2014_quadrat_photos.zip
download
76259
https://darchive.mblwhoilibrary.org/bitstream/1912/29533/6/dataset-862410_benthic-cover-quadrats-and-photos__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.862410.1
download
onLine
dataset
<p>Photoquadrat framer&nbsp;constructed from PVC pipe, PVC cement, galvanized bolts, wing nuts, and washers.&nbsp; Quadrat was 50 x 50 cm.<br />
<br />
<strong>Benthic quadrat procedure:</strong></p>
<p>- records dive and transect attributes:<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - dive number<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - transect number<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - site name<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - date<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - time<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - observer initials<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - visibility (meters)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - depth at start of transect (feet)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - depth at end of transect (feet)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - transect length (meters)<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - quadrat number</p>
<p>- places 5 quadrats in fixed or random locations along transect<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - random locations were selected prior to the start of the transect<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - fixed locations were returned to each year<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - nails were driven into the reef the first year to mark locations<br />
- observes and records the primary benthic cover within the quadrat<br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; - family of invertebrate or abiotic benthic cover<br />
- measures rugosity within the quadrat using the chain method.&nbsp;Rugosity was measured with a 6 m chain. (See EPA Field Manual for Coral Reef Assessments,&nbsp;Santavy et al. (2012).<br />
- records any additional notes<br />
- takes photo and records photo file number<br />
<br />
<strong>Issue report:</strong></p>
<p>Some photos could not be taken if the reef was too shallow and the camera was above water.</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Data Manager Processing notes:<br />
* Imported data tables each sheet named "Quadrats" within files submitted to BCO-DMO as&nbsp;Transect_and_quadrat_data/GPSSurveys.*.xlsx<br />
* Supplemental transect locations table from Transect_locations/Transect_locations.*.xlsx concatenated together and attached to this dataset and Fish and Invertebrate Transects dataset as a supplemental file.&nbsp;&nbsp;See file description for details about one location lat/lon that was updated based on a comment in the file.<br />
* replaced semicolons in time values to colons to match the rest of the time format.<br />
* Column Image_nums listed&nbsp;file image numbers delimited with either a space, comma, or comma and space.&nbsp; Changed to semicolon delimiter for consistency.<br />
* Date format changed to ISO 8601 format YYYY-MM-DD<br />
* Column ISO_DateTime_UTC added to data table from local dates and times.<br />
* Dataset contains variable missing data identifiers (blank,?,X, and a period alone in a cell).&nbsp; These were left as-is though the difference is unknown.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Canon Rebel T5i
Canon Rebel T5i
PI Supplied Instrument Name: Canon Rebel T5i PI Supplied Instrument Description:Waterproof Camera: Canon Rebel T5i with an EF-S 18-55mm lens. Instrument Name: Underwater Camera Instrument Short Name: Instrument Description: All types of photographic equipment that may be deployed underwater including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/180/