http://lod.bco-dmo.org/id/dataset/866304
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-12-08
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017.
2022-02-23
publication
2022-02-23
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2022-03-15
publication
https://doi.org/10.26008/1912/bco-dmo.866304.1
Brian Gaylord
University of California - Davis: Bodega Marine Laboratory
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Ninokawa, A. T., Gaylord, B. (2022) Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-02-23 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.866304.1 [access date]
Effects of mussels on seawater chemistry - vertical profiles Dataset Description: Methods and Sampling: <p>These data were generated by establishing a mussel bed in a laboratory flow tunnel. Each profile represents a period where chemistry (pH and O2) was measured at defined heights within and above the mussel bed. These profiles occurred at two places in the mussel bed. Alkalinity at the top of each profile was determined with bottle samples and interpolated to each time point. Alkalinity profiles were generated by calculating the change in alkalinity using the pH and O2 profiles. These chemical profiles were used to calculate calcification and respiration rates of the mussel bed.</p>
<p>Known Issues: No oxygen data was collected for profiles 1-7. This also prohibits the calculation of alkalinity profiles.</p>
<p>Methods described in detail in Ninokawa et al. (2020).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1636191 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1636191
completed
Brian Gaylord
University of California - Davis: Bodega Marine Laboratory
707-875-1940
Bodega Marine Laboratory & Department of Evolution and Ecology 2099 Westshore Road, P.O. Box 247
Bodega Bay
CA
94923
USA
bpgaylord@ucdavis.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
profile
ISO_DateTime_Local
ISO_DateTime_UTC
ph_height
ph_position
top_ph
prof_ph
diff_ph
top_temp
prof_temp
salinity
o2_height
o2_position
top_o2
prof_o2
diff_o2
top_TA
prof_TA
del_TA
Nortek acoustic doppler profiler
Presens Microx 4 Profiling O2 and temperature sensor
Honeywell Durafet III combination electrode
Yellow Springs Instruments 6920 Multiparameter Sonde.
theme
None, User defined
cast
ISO_DateTime_Local
ISO_DateTime_UTC
height
No BCO-DMO term
pH
water temperature at measurement depth
sal_nis
dissolved Oxygen
total alkalinity (TA)
featureType
BCO-DMO Standard Parameters
Acoustic Doppler Current Profiler
Oxygen Microelectrode Sensor
pH Sensor
YSI Sonde 6-Series
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Trophic consequences of ocean acidification: Intertidal sea star predators and their grazer prey
https://osprey.bco-dmo.org/project/712799
Trophic consequences of ocean acidification: Intertidal sea star predators and their grazer prey
<p><em>NSF Award Abstract:</em><br />
The absorption of human-produced carbon dioxide into the world's oceans is altering the chemistry of seawater, including decreasing its pH. Such changes, collectively called "ocean acidification", are expected to influence numerous types of sea creatures. This project examines how shifts in ocean pH affect animal behavior and thus interactions among species. It uses a case study system that involves sea star predators, snail grazers that they eat, and seaweeds consumed by the latter. The rocky-shore habitats where these organisms live have a long history of attention, and new findings from this work will further extend an already-large body of marine ecological knowledge. The project provides support for graduate and undergraduate students, including underrepresented students from a nearby community college. The project underpins the development of a new educational module for local K-12 schools. Findings will moreover be communicated to the public through the use of short film documentaries, as well as through established relationships with policy, management, and industry groups, and contacts with the media.</p>
<p>Ocean acidification is a global-scale perturbation. Most research on the topic, however, has examined effects on single species operating in isolation, leaving interactions among species underexplored. This project confronts this knowledge gap by considering how ocean acidification may shift predator-prey relationships through altered behavior. It targets as a model system sea stars, their gastropod grazer prey, and macoalgae consumed by the latter, via four lines of inquiry. 1) The project examines the functional response of the focal taxa to altered seawater chemistry, using experiments that target up to 16 discrete levels of pH. This experimental design is essential for identifying nonlinearities and tipping points. 2) The project addresses both consumptive and non-consumptive components of direct and indirect species interactions. The capacity of ocean acidification to influence such links is poorly known, and better understanding of this issue is a recognized priority. 3) The project combines controlled laboratory experiments with field trials that exploit tide pools and their unique pH signatures as natural mesocosms. Field tests of ocean acidification effects are relatively rare and are sorely needed. 4) A final research phase expands upon the above three components to address effects of ocean acidification on multiple additional taxa that interact in rocky intertidal systems, to provide a broad database that may have utility for future experiments or modeling.</p>
BOAR Trophic
largerWorkCitation
project
eng; USA
oceans
-123.04805
-123.04805
38.33325
38.33325
2017-01-27
2017-02-14
Central California coast, USA
0
BCO-DMO catalogue of parameters from Vertical profiles of chemistry within and above a mussel bed established in a laboratory flow tunnel at the Bodega Marine Laboratory, CA in 2017.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/870284.rdf
Name: profile
Units: unitless
Description: <p>profile identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/870285.rdf
Name: ISO_DateTime_Local
Units: unitless
Description: <p>date and time of measurement in Pacific time zone in format: YYYY-MM-DDTHH:MM</p>
http://lod.bco-dmo.org/id/dataset-parameter/870286.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>date and time of measurement in UTC in format: YYYY-MM-DDThh:mmZ</p>
http://lod.bco-dmo.org/id/dataset-parameter/870287.rdf
Name: ph_height
Units: centimeters (cm)
Description: <p>height of profiling pH sensors above the substrate</p>
http://lod.bco-dmo.org/id/dataset-parameter/870288.rdf
Name: ph_position
Units: unitless
Description: <p>location of pH sensor in the bed, 1=95 cm downstream of leading edge, 2=145 cm downstream of leading edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/870289.rdf
Name: top_ph
Units: unitless
Description: <p>pH measured by the top pH sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870290.rdf
Name: prof_ph
Units: unitless
Description: <p>pH measured by the profiling pH sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870291.rdf
Name: diff_ph
Units: unitless
Description: <p>pH difference between the profiling pH and top pH sensors (diff.ph=prof.ph-top.ph)</p>
http://lod.bco-dmo.org/id/dataset-parameter/870292.rdf
Name: top_temp
Units: degrees celsius
Description: <p>temperature measured by the top temperature sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870293.rdf
Name: prof_temp
Units: degrees celsius
Description: <p>temperature measured by the profiling temperature sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870294.rdf
Name: salinity
Units: PSU
Description: <p>salinity measured by the top salinity meter</p>
http://lod.bco-dmo.org/id/dataset-parameter/870295.rdf
Name: o2_height
Units: centimeters (cm)
Description: <p>height of O2 profiling sensor above the substrate</p>
http://lod.bco-dmo.org/id/dataset-parameter/870296.rdf
Name: o2_position
Units: unitless
Description: <p>location of pH sensor in the bed, 1=95 cm downstream of leading edge, 2=145 cm downstream of leading edge</p>
http://lod.bco-dmo.org/id/dataset-parameter/870297.rdf
Name: top_o2
Units: µmol kg-1
Description: <p>oxygen concentration measured by the top O2 sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870298.rdf
Name: prof_o2
Units: µmol kg-1
Description: <p>oxygen concentration measured by the profiling O2 sensor</p>
http://lod.bco-dmo.org/id/dataset-parameter/870299.rdf
Name: diff_o2
Units: µmol kg-1
Description: <p>oxygen concentration difference between the profiling O2 and top O2 sensors (diff.o2=prof.o2-top.o2)</p>
http://lod.bco-dmo.org/id/dataset-parameter/870300.rdf
Name: top_TA
Units: µmol kg-1
Description: <p>alkalinity at the top of the profiles measured with bottle samples</p>
http://lod.bco-dmo.org/id/dataset-parameter/870301.rdf
Name: prof_TA
Units: µmol kg-1
Description: <p>alkalinity measured at the profiler height by combining the top alkalinity and alkalinity change values (prof.TA = top.TA+del.TA)</p>
http://lod.bco-dmo.org/id/dataset-parameter/870302.rdf
Name: del_TA
Units: µmol kg-1
Description: <p>alkalinty change profiles calculated by the combination of pH and O2 profiles (Barnes, 1983)</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
46311
https://darchive.mblwhoilibrary.org/bitstream/1912/28197/1/dataset-866304_effects-mussels-seawater-chemistry-vertical-profiles__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.866304.1
download
onLine
dataset
<p>These data were generated by establishing a mussel bed in a laboratory flow tunnel. Each profile represents a period where chemistry (pH and O2) was measured at defined heights within and above the mussel bed. These profiles occurred at two places in the mussel bed. Alkalinity at the top of each profile was determined with bottle samples and interpolated to each time point. Alkalinity profiles were generated by calculating the change in alkalinity using the pH and O2 profiles. These chemical profiles were used to calculate calcification and respiration rates of the mussel bed.</p>
<p>Known Issues: No oxygen data was collected for profiles 1-7. This also prohibits the calculation of alkalinity profiles.</p>
<p>Methods described in detail in Ninokawa et al. (2020).</p>
Specified by the Principal Investigator(s)
<p>Data Processing:<br />
All data analyses were performed with R Statistical Software. The seacarb package was used for carbonate chemistry calculations and the marelac package was used for estimating oxygen flux out of the surface of the flow tunnel.</p>
<p>BCO-DMO Processing:<br />
- Adjusted field/parameter names to comply with BCO-DMO naming conventions<br />
- Missing data identifier ‘NA’ replaced with 'nd' (BCO-DMO's default missing data identifier)<br />
- Converted date/time field to ISO8601 format (YYYY-MM-DDThh:mm)<br />
- Added date/time field in UTC time zone<br />
- Added a conventional header with dataset name, PI names, version date</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Nortek acoustic doppler profiler
Nortek acoustic doppler profiler
PI Supplied Instrument Name: Nortek acoustic doppler profiler PI Supplied Instrument Description:Freestream velocity and u* were extracted from velocity profiles. A relationship between flow tunnel speed setting and freestream velocity and u* was used during period the ADP lacked sufficient particles in the water for accurate velocity measurements. Instrument Name: Acoustic Doppler Current Profiler Instrument Short Name:ADCP Instrument Description: The ADCP measures water currents with sound, using a principle of sound waves called the Doppler effect. A sound wave has a higher frequency, or pitch, when it moves to you than when it moves away. You hear the Doppler effect in action when a car speeds past with a characteristic building of sound that fades when the car passes. The ADCP works by transmitting "pings" of sound at a constant frequency into the water. (The pings are so highly pitched that humans and even dolphins can't hear them.) As the sound waves travel, they ricochet off particles suspended in the moving water, and reflect back to the instrument. Due to the Doppler effect, sound waves bounced back from a particle moving away from the profiler have a slightly lowered frequency when they return. Particles moving toward the instrument send back higher frequency waves. The difference in frequency between the waves the profiler sends out and the waves it receives is called the Doppler shift. The instrument uses this shift to calculate how fast the particle and the water around it are moving. Sound waves that hit particles far from the profiler take longer to come back than waves that strike close by. By measuring the time it takes for the waves to bounce back and the Doppler shift, the profiler can measure current speed at many different depths with each series of pings. (More from WHOI instruments listing). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/115/
Presens Microx 4 Profiling O2 and temperature sensor
Presens Microx 4 Profiling O2 and temperature sensor
PI Supplied Instrument Name: Presens Microx 4 Profiling O2 and temperature sensor PI Supplied Instrument Description:Presens Microx 4 with needle-type microsensor. O2 and temperature calibrate by the manufacturer. O2 calibration verified in seawater equilibrated with atmospheric O2 and sensors deviating from 100% were replaced. Instrument Name: Oxygen Microelectrode Sensor Instrument Short Name:O2 Microelectrode Instrument Description: Any microelectrode sensor that measures oxygen. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/351/
Honeywell Durafet III combination electrode
Honeywell Durafet III combination electrode
PI Supplied Instrument Name: Honeywell Durafet III combination electrode PI Supplied Instrument Description:Top pH sensor: Honeywell Durafet III combination electrode calibrated to total scale with spectrophotometric pH determination on discrete water samples
Profiling pH sensor: Honeywell Durafet III combination electrode calibrated to total scale by holding adjacent to the top pH sensor Instrument Name: pH Sensor Instrument Short Name:pH Sensor Instrument Description: An instrument that measures the hydrogen ion activity in solutions.
The overall concentration of hydrogen ions is inversely related to its pH. The pH scale ranges from 0 to 14 and indicates whether acidic (more H+) or basic (less H+).
Yellow Springs Instruments 6920 Multiparameter Sonde.
Yellow Springs Instruments 6920 Multiparameter Sonde.
PI Supplied Instrument Name: Yellow Springs Instruments 6920 Multiparameter Sonde. PI Supplied Instrument Description:Top O2, salinity, and temperature sensor: Yellow Springs Instruments 6920 Multiparameter Sonde. O2 calibrated by holding adjacent to the profiling O2 sensor. Salinity calibrated with YSI 50 uS/cm Conductivity Standard. Temperature calibrated by manufacturer. Instrument Name: YSI Sonde 6-Series Instrument Short Name:YSI Sonde 6-Series Instrument Description: YSI 6-Series water quality sondes and sensors are instruments for environmental monitoring and long-term deployments. YSI datasondes accept multiple water quality sensors (i.e., they are multiparameter sondes). Sondes can measure temperature, conductivity, dissolved oxygen, depth, turbidity, and other water quality parameters. The 6-Series includes several models. More from YSI. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0737/