http://lod.bco-dmo.org/id/dataset/866614
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2021-12-10
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Pyrosome (Pyrosoma atlanticum) counts from vertical video profiles in the Northern California Current acquired between February and July 2018.
2021-12-10
publication
2021-12-10
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2022-08-11
publication
https://doi.org/10.26008/1912/bco-dmo.866614.1
Kelly Rakow Sutherland
University of Oregon
principalInvestigator
Robert K. Cowen
Oregon State University
principalInvestigator
Su Sponaugle
Oregon State University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Sutherland, K. R., Cowen, R. K., Sponaugle, S., Lyle, J. (2022) Pyrosome (Pyrosoma atlanticum) counts from vertical video profiles in the Northern California Current acquired between February and July 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2021-12-10 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.866614.1 [access date]
Pyrosome counts from vertical video profiles, February - july 2018 Dataset Description: <p>These data were published in<em> </em>Lyle, J.T. et al. 2021</p> Methods and Sampling: <p>We mounted a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) and two 7500 lumen lights (BigBlue VL7500P) to the ship’s onboard CTD rosette frame. At each station, simultaneous CTD and camera deployments captured fine-scale (1 m), <em>in situ</em> counts of pyrosomes to 100 m, or 5 m above the bottom at shallower stations. Camera frames were subsequently analyzed to determine pyrosome distributions with depth. For each meter of depth, we extracted a still frame from the camera and counted all pyrosome colonies. We adjusted this count by subtracting colonies that were visible in the still frame of the previous meter to avoid double-counts.</p>
<p>In situ videos were captured using a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) with two 7500 lumen lights (BigBlue VL7500P) mounted to the ship’s onboard CTD rosette frame. Video was aligned to depth information captured by the CTD (SBE 911).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1737399 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1737399
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1737364 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1737364
completed
Kelly Rakow Sutherland
University of Oregon
541-913-6560
5289 University of Oregon
Eugene
OR
97403-5219
USA
ksuth@uoregon.edu
pointOfContact
Robert K. Cowen
Oregon State University
541-867-2011
Hatfield Marine Science Center 2030 SE Marine Science Drive
Newport
OR
97376
USA
robert.cowen@oregonstate.edu
pointOfContact
Su Sponaugle
Oregon State University
541-867-0314
Department of Integrative Biology, Hatfield Marine Science Center 2030 SE Marine Science Drive
Newport
OR
97376
USA
su.sponaugle@oregonstate.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Cruise
Location
Station
Transect
Date_Time_UTC
Latitude
Longitude
Depth
Pyro_binned_count
CTD (SBE 911)
GoPro Hero 4 (4K, 30fps)
theme
None, User defined
Cruise identfier
station id
transect
ISO_DateTime_UTC
latitude
longitude
depth
count
featureType
BCO-DMO Standard Parameters
CTD Sea-Bird 911
Underwater Camera
instrument
BCO-DMO Standard Instruments
SKQ201804S
SR1810
service
Deployment Activity
Northern California Current waters
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Mesozooplankton food webs in intermittent upwelling systems: An overlooked link in a productive ocean
https://osprey.bco-dmo.org/project/743417
Collaborative Research: Mesozooplankton food webs in intermittent upwelling systems: An overlooked link in a productive ocean
<p>This project will examine the coastal ocean mesozooplankton community and their predation by early life stages of fish in the northern California Current. The goal is to understand how these predator-prey interactions change during different oceanographic regimes that vary seasonally in the region. This study will use a very high-resolution imaging system coupled with net samples to measure trophic interactions within the zooplankton community across a range of environmental parameters (e.g., temperature, relative timing and intensity of upwelling). The camera provides detailed information on the fine-scale abundance and spatial distributions of a wide diversity of plankton, while the net samples will provide biological samples for diet-related analyses. This project will train 12 undergraduate and two graduate students and one post-doctoral scholar. The research team will develop a variety of educational activities and products to facilitate greater outreach to public audiences. Plankton imagery from this project will be used to build the Global Plankton Imagery Library, an open-access repository for plankton imagery that will be a resource for the research community. The researchers will expand the imagery available in the Plankton Portal, a public website they developed in partnership with the Citizen Science Alliance's Zooniverse, that invites citizen scientists to participate in classifying plankton from field photographs. They will collaborate with Science Education specialists to include Plankton Portal kiosks in a new public exhibit at the Oregon State University's Hatfield Marine Science Center (HMSC) Visitor Center, which annually hosts 150,000 visitors of all ages. Importantly, this activity will not only educate K-12 and beyond, but will enable researchers to study what factors motivate citizen scientists, what characterizes "heavy-users", and how those users can be supported and encouraged into advanced collaborator roles. A multi-media artist will join the research cruises as part of the new Artist-At-Sea program. Their artwork will be displayed at the HMSC Visitor Center and University of Oregon's Charleston Marine Life Center and a scaled traveling show will tour Oregon metropolitan areas and underserved communities.</p>
<p>Eastern boundary currents are among the most productive marine ecosystems on the planet and support a significant proportion of global fisheries, yet there are unanswered questions about the role of non-crustacean zooplankton in transferring production through upwelling food webs. This study will answer key questions about the food web dynamics associated with mesozooplankton linkages, sources of carbon production, and consequences for upper trophic levels in different shelf upwelling systems. Not only is there a knowledge gap in how the food web currently functions in transition areas of major eastern boundary current systems, but there is increasing evidence that these systems are changing. Regional and global shifts in major currents, including upwelling strength, together with temperature-induced latitudinal shifts in species ranges that are already occurring and predicted to continue will have major effects on interactions among species, and consequently, food webs. Understanding these interactions and predicting future changes is highly relevant to science, society, and economies. The researchers plan to sample the winter and summer seasons in the northern California Current off central Oregon (intermittent upwelling) and northern California (continuous upwelling) with the high resolution In Situ Ichthyoplankton Imaging System to obtain an accurate description of mesozooplankton communities: their abundances, and horizontal and vertical spatial distributions, over contrasting upwelling/downwelling system dynamics. In parallel, they plan to collect depth-discrete mesozooplankton samples to quantify seasonal diets for larval fishes and gelatinous zooplankton and prey-specific growth rates of larval fishes. Stable isotope analysis of mesozooplankton predators and prey will reveal the relative role of new vs. regenerated production in sustaining food webs such major eastern boundary currents.</p>
MEZCAL
largerWorkCitation
project
eng; USA
oceans
Northern California Current waters
-125.118
-124.117
41.0575
44.6532
2018-02-17
2018-07-12
Northern California Current
0
BCO-DMO catalogue of parameters from Pyrosome (Pyrosoma atlanticum) counts from vertical video profiles in the Northern California Current acquired between February and July 2018.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/866634.rdf
Name: Cruise
Units: unitless
Description: <p>Cruise identification number: S=summer; W=winter; 18=2018</p>
http://lod.bco-dmo.org/id/dataset-parameter/866635.rdf
Name: Location
Units: unitless
Description: <p>Sampling location: NH=Newport, OR; TR=Trinidad Head, CA</p>
http://lod.bco-dmo.org/id/dataset-parameter/866636.rdf
Name: Station
Units: unitless
Description: <p>Location along transect: 1=closest nearshore; 5=furthest offshore; D=day; N=night</p>
http://lod.bco-dmo.org/id/dataset-parameter/866637.rdf
Name: Transect
Units: unitless
Description: <p>Sampling transect: Ma=first transect; Mb=second transect</p>
http://lod.bco-dmo.org/id/dataset-parameter/866638.rdf
Name: Date_Time_UTC
Units: unitless
Description: <p>Date and time of the start of the net towing in UTC time zone</p>
http://lod.bco-dmo.org/id/dataset-parameter/866639.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude of deployment start location, north is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/866640.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude of deployment start location, west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/866641.rdf
Name: Depth
Units: meters
Description: <p>Depth of sampling in meters. Depth bins start at the surface to 100 m.</p>
http://lod.bco-dmo.org/id/dataset-parameter/866642.rdf
Name: Pyro_binned_count
Units: counts
Description: <p>Pyrosome counts from vertical video profiles in 1-m depth bins. Data may be missing near the surface due to visual disturbances, or at shallower stations where the bottom depth is < 100 m.</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
242561
https://darchive.mblwhoilibrary.org/bitstream/1912/29207/1/dataset-866614_pyrosomes-cam__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.866614.1
download
onLine
dataset
<p>We mounted a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) and two 7500 lumen lights (BigBlue VL7500P) to the ship’s onboard CTD rosette frame. At each station, simultaneous CTD and camera deployments captured fine-scale (1 m), <em>in situ</em> counts of pyrosomes to 100 m, or 5 m above the bottom at shallower stations. Camera frames were subsequently analyzed to determine pyrosome distributions with depth. For each meter of depth, we extracted a still frame from the camera and counted all pyrosome colonies. We adjusted this count by subtracting colonies that were visible in the still frame of the previous meter to avoid double-counts.</p>
<p>In situ videos were captured using a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) with two 7500 lumen lights (BigBlue VL7500P) mounted to the ship’s onboard CTD rosette frame. Video was aligned to depth information captured by the CTD (SBE 911).</p>
Specified by the Principal Investigator(s)
<p>Videos were processed using VirtualDub. Depth information was extracted from CTD files using SBE data processing (v.7.26.6).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
CTD (SBE 911)
CTD (SBE 911)
PI Supplied Instrument Name: CTD (SBE 911) PI Supplied Instrument Description:In situ videos were captured using a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) with two 7500 lumen lights (BigBlue VL7500P) mounted to the ship’s onboard CTD rosette frame. Video was aligned to depth information captured by the CTD (SBE 911). Instrument Name: CTD Sea-Bird 911 Instrument Short Name:CTD SBE 911 Instrument Description: The Sea-Bird SBE 911 is a type of CTD instrument package. The SBE 911 includes the SBE 9 Underwater Unit and the SBE 11 Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 and SBE 11 is called a SBE 911. The SBE 9 uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 and SBE 4). The SBE 9 CTD can be configured with auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). More information from Sea-Bird Electronics. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0035/
GoPro Hero 4 (4K, 30fps)
GoPro Hero 4 (4K, 30fps)
PI Supplied Instrument Name: GoPro Hero 4 (4K, 30fps) PI Supplied Instrument Description:In situ videos were captured using a GoPro Hero 4 (4K, 30fps) in a deep-water housing (GoDeep Aluminum, Sexton Inc.) with two 7500 lumen lights (BigBlue VL7500P) mounted to the ship’s onboard CTD rosette frame. Video was aligned to depth information captured by the CTD (SBE 911). Instrument Name: Underwater Camera Instrument Short Name: Instrument Description: All types of photographic equipment that may be deployed underwater including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/180/
Cruise: SKQ201804S
SKQ201804S
R/V Sikuliaq
Community Standard Description
International Council for the Exploration of the Sea
R/V Sikuliaq
vessel
SKQ201804S
Robert K. Cowen
Oregon State University
Cruise: SR1810
SR1810
R/V Sally Ride
Community Standard Description
International Council for the Exploration of the Sea
R/V Sally Ride
vessel
SR1810
Robert K. Cowen
Oregon State University
R/V Sikuliaq
Community Standard Description
International Council for the Exploration of the Sea
R/V Sikuliaq
vessel
R/V Sally Ride
Community Standard Description
International Council for the Exploration of the Sea
R/V Sally Ride
vessel