http://lod.bco-dmo.org/id/dataset/875156
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2022-06-01
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Ecological results of SCTLD multi-species transmission experiment at the University of the Virgin Islands Center for Marine and Environmental Studies
2022-07-20
publication
2022-07-20
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2022-07-20
publication
https://doi.org/10.26008/1912/bco-dmo.875156.1
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Amy Apprill
Woods Hole Oceanographic Institution
principalInvestigator
Adrienne M.S. Correa
Rice University
principalInvestigator
Daniel Holstein
Louisiana State University
principalInvestigator
Erinn M. Muller
Mote Marine Laboratory
principalInvestigator
Laura Mydlarz
University of Texas at Arlington
principalInvestigator
Tyler Smith
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Bradford Dimos
University of Texas at Arlington
principalInvestigator
Naomi Huntley
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Danielle Lasseigne
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Nicholas MacKnight
University of Texas at Arlington
principalInvestigator
Sonora Meiling
University of the Virgin Islands Center for Marine and Environmental Studies
principalInvestigator
Alex J. Veglia
Rice University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Brandt, M., Correa, A. M., Meiling, S., Veglia, A. J., Lasseigne, D., MacKnight, N., Dimos, B., Huntley, N., Muller, E., Mydlarz, L., Apprill, A., Smith, T., Holstein, D. (2022) Ecological results of SCTLD multi-species transmission experiment at the University of the Virgin Islands Center for Marine and Environmental Studies. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-07-20 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.875156.1 [access date]
Transmission and Lesion Data Dataset Description: Methods and Sampling: <p>In summary, eight colonies each of healthy <em>Colophyllia natans</em>, <em>Montastraea cavernosa</em>, <em>Orbicella annularis</em>, <em>Porites astreoides</em>, <em>Pseudodiploria strigosa</em>, and <em>Siderastrea siderea</em> were collected from the field where no disease was reported and brought to the University of the Virgin Islands marine laboratory and kept in running seawater tables. Colonies were split into two and allowed to acclimate to seawater table conditions. One day prior to the experiment commencing, eight healthy colonies of <em>Diploria labyrinthiformis</em> were collected from the same site. Separately, an additional 8 colonies of <em>D. labyrinthiformis</em> exhibiting signs consistent with stony coral tissue loss disease (SCTLD) were collected from a known diseased location and kept separate from healthy colonies. On the day the experiment commenced, fragments of the six coral species were arranged at equal distances around a healthy <em>D. labyrinthiformis</em>. For the disease treatment, corresponding fragments of each genet of the six species were arranged around a SCTLD-affected <em>D. labyrinthiformis</em>. Water changes were performed each day and all corals were checked twice daily for the appearance of lesions. When lesions appeared on a colony it was monitored more frequently and if lesions were determined to be consistent with SCTLD and expanding over a 12-hour period, the fragment was photographed, removed from the experimental container, and processed.</p>
<p>Methods and data analysis are published in Meiling et al. 2021 (doi: <a href="http://dx.doi.org/10.3389/fmars.2021.670829" target="_blank">10.3389/fmars.2021.670829</a>).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1928753 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1928753
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1927277 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1927277
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1928771 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1928771
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1928817 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1928817
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1928761 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1928761
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1928609 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1928609
completed
Marilyn Brandt
University of the Virgin Islands Center for Marine and Environmental Studies
340-693-1379
2 John Brewers Bay
St. Thomas, USVI
00802
mbrandt@uvi.edu
pointOfContact
Amy Apprill
Woods Hole Oceanographic Institution
508-289-2649
Marine Chemistry and Geochemistry Department 266 Woods Hole Road, MS# 4
Woods Hole
MA
02543
USA
aapprill@whoi.edu
pointOfContact
Adrienne M.S. Correa
Rice University
amsc@berkeley.edu
pointOfContact
Daniel Holstein
Louisiana State University
NY
USA
daniel.holstein@stonybrook.edu
pointOfContact
Erinn M. Muller
Mote Marine Laboratory
941-388-4441 x 310
1600 Ken Thompson Parkway
Sarasota
FL
34241
USA
emuller@mote.org
pointOfContact
Laura Mydlarz
University of Texas at Arlington
817-272-0397
501 S. Nedderman Dr. 337 Life Sciences Building
Arlington
TX
76013
United States
mydlarz@uta.edu
pointOfContact
Tyler Smith
University of the Virgin Islands Center for Marine and Environmental Studies
1-340-693-1394
#2 John Brewers Bay
St. Thomas
U.S. Virgin Islands
00802
tsmith@uvi.edu
pointOfContact
Bradford Dimos
University of Texas at Arlington
bradford.dimos@uta.edu
pointOfContact
Naomi Huntley
University of the Virgin Islands Center for Marine and Environmental Studies
2 John Brewers Bay
St. Thomas
00802
Virgin Islands
neh5207@psu.edu
pointOfContact
Danielle Lasseigne
University of the Virgin Islands Center for Marine and Environmental Studies
2 John Brewers Bay
St. Thomas
00802
Virgin Islands
dlasseigne88@gmail.com
pointOfContact
Nicholas MacKnight
University of Texas at Arlington
nicholas.macknight@uta.edu
pointOfContact
Sonora Meiling
University of the Virgin Islands Center for Marine and Environmental Studies
503-803-4142
2 John Brewers Bay
St. Thomas
00802
VI
sonora.meiling@uvi.edu
pointOfContact
Alex J. Veglia
Rice University
6100 Main St
Houston
TX
77004
USA
ajv5@rice.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Species
Replicate
End_infection_status
Days_to_infection
Change_in_time
Change_in_area_of_lesion
Lesion_expansion_rate_hour
Lesion_expansion_rate_minute
Colony_size
Percent_lesion_expansion_rate
theme
None, User defined
species scientific name (binomial)
replicate
comments
number
sample time
area_measured
No BCO-DMO term
surface_area
percent coverage
featureType
BCO-DMO Standard Parameters
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RAPID: Collaborative Research: Predicting the Spread of Multi-Species Coral Disease Using Species Immune Traits
https://osprey.bco-dmo.org/project/811115
RAPID: Collaborative Research: Predicting the Spread of Multi-Species Coral Disease Using Species Immune Traits
<p><em>NSF Award Abstract:</em><br />
Coral reef ecosystems provide substantial economic resources to the societies of the United States Virgin Islands (USVI) and other US locations in the forms of tourism, fishing and coastal protection. However, reefs are among the most threatened marine environments, and coral disease is having a devastating impact on these valued systems. In early 2019, a multi-species rapid tissue loss disease matching the description of stony coral tissue loss disease (SCTLD) was found severely affecting a reef off the southwest coast of St. Thomas in the US Virgin Islands (USVI). SCTLD has been devastating coral reef communities in southeast Florida for the last four years, and was very recently reported from disparate areas around the Caribbean, including Mexico, Jamaica, and St. Martin. Rapid surveys by the investigators at the University of the Virgin Islands believe that a 50 km2 area southwest of St. Thomas is the initial incidence area of the disease, but will likely spread across the USVI, British Virgin Islands, and Puerto Rico. This study performs experiments to understand how this disease affects coral species immune traits and compares the microbiology and physiology of disease samples in the USVI to samples from Florida. It also examines how changing the species composition of a coral community affects the spread and impact of the disease. The overall aim is to produce a model to predict the impact of multi-species disease spread on reefs based on coral species assemblages. The project contributes to the research training of at least 2 undergraduates, 2 M.S. students, and 3 Ph.D. students, who benefit from cross-investigator mentoring. The research team includes representatives to the Coral Disease Advisory Committees for the USVI and Florida, which ensures rapid communication of findings to management bodies in both regions.</p>
<p>Coral disease is a significant and increasing threat to Caribbean coral reef systems. Recent results demonstrate that coral species immune traits can predict disease resistance, and thus, forecast impacts to coral community structure, under multi-species coral disease. The onset of this epizootic in the USVI offers an unprecedented opportunity to test hypotheses about the impact of coral resistance, tolerance and immune traits on disease spread during the early stages of an outbreak that could profoundly change the diversity of Caribbean reefs. It is hypothesized that the abundance of highly susceptible species dictates 1) the onset of disease at reef sites downstream of the initial incidence area, and 2) the spread of disease within reef sites. Furthermore, 3) downstream reef sites where highly susceptible species are removed or treated show lower immune responses in all susceptible corals, later onset of disease, and slower within-site disease spread. To test these hypotheses, two experiments directly compare species responses to disease exposure and test the effect of species assemblage on coral immune function and disease spread. Results from these experiments aim to inform a generalizable model to predict the impact of multi-species disease spread on reefs based on coral species assemblages. Results of this project include direct comparison of the USVI disease to Florida SCTLD and a better understanding of how the abundance of highly susceptible host species impacts the spread of disease during the early onset of a multi-species panzootic.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Multi-Species Coral Disease
largerWorkCitation
project
eng; USA
oceans
-64.9908333333
-64.9259722222
18.3174722222
18.3276666667
2019-03-22
2019-04-10
St. Thomas, U.S. Virgin Islands
0
BCO-DMO catalogue of parameters from Ecological results of SCTLD multi-species transmission experiment at the University of the Virgin Islands Center for Marine and Environmental Studies
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/875243.rdf
Name: Species
Units: unitless
Description: <p>Species name</p>
http://lod.bco-dmo.org/id/dataset-parameter/875244.rdf
Name: Replicate
Units: unitless
Description: <p>Replicate/Bin #</p>
http://lod.bco-dmo.org/id/dataset-parameter/875245.rdf
Name: End_infection_status
Units: unitless
Description: <p>Status of infection at the end of the experiment</p>
http://lod.bco-dmo.org/id/dataset-parameter/875246.rdf
Name: Days_to_infection
Units: unitless
Description: <p>Number of days to infection</p>
http://lod.bco-dmo.org/id/dataset-parameter/875247.rdf
Name: Change_in_time
Units: hours
Description: <p>Change in time</p>
http://lod.bco-dmo.org/id/dataset-parameter/875248.rdf
Name: Change_in_area_of_lesion
Units: centimeters squared (cm^2)
Description: <p>Change in area of lesion</p>
http://lod.bco-dmo.org/id/dataset-parameter/875249.rdf
Name: Lesion_expansion_rate_hour
Units: centimeters squared per hour (cm^2 per hr)
Description: <p>Expansion rate of lesions per hour</p>
http://lod.bco-dmo.org/id/dataset-parameter/875250.rdf
Name: Lesion_expansion_rate_minute
Units: centimeters squared per minute (cm^2 per min)
Description: <p>Expansion rate of lesions per minute</p>
http://lod.bco-dmo.org/id/dataset-parameter/875251.rdf
Name: Colony_size
Units: centimeters squared (cm^2)
Description: <p>Size of colony</p>
http://lod.bco-dmo.org/id/dataset-parameter/875252.rdf
Name: Percent_lesion_expansion_rate
Units: percent per minute (%/min)
Description: <p>Expansion rate of lesion</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
3253
https://darchive.mblwhoilibrary.org/bitstream/1912/29141/1/dataset-875156_transmission-and-lesion-data__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.875156.1
download
onLine
dataset
<p>In summary, eight colonies each of healthy <em>Colophyllia natans</em>, <em>Montastraea cavernosa</em>, <em>Orbicella annularis</em>, <em>Porites astreoides</em>, <em>Pseudodiploria strigosa</em>, and <em>Siderastrea siderea</em> were collected from the field where no disease was reported and brought to the University of the Virgin Islands marine laboratory and kept in running seawater tables. Colonies were split into two and allowed to acclimate to seawater table conditions. One day prior to the experiment commencing, eight healthy colonies of <em>Diploria labyrinthiformis</em> were collected from the same site. Separately, an additional 8 colonies of <em>D. labyrinthiformis</em> exhibiting signs consistent with stony coral tissue loss disease (SCTLD) were collected from a known diseased location and kept separate from healthy colonies. On the day the experiment commenced, fragments of the six coral species were arranged at equal distances around a healthy <em>D. labyrinthiformis</em>. For the disease treatment, corresponding fragments of each genet of the six species were arranged around a SCTLD-affected <em>D. labyrinthiformis</em>. Water changes were performed each day and all corals were checked twice daily for the appearance of lesions. When lesions appeared on a colony it was monitored more frequently and if lesions were determined to be consistent with SCTLD and expanding over a 12-hour period, the fragment was photographed, removed from the experimental container, and processed.</p>
<p>Methods and data analysis are published in Meiling et al. 2021 (doi: <a href="http://dx.doi.org/10.3389/fmars.2021.670829" target="_blank">10.3389/fmars.2021.670829</a>).</p>
Specified by the Principal Investigator(s)
<p><strong>Data Processing:</strong><br />
Photographs of diseased corals were analyzed for lesion expansion rates using the program ImageJ (NIH).</p>
<p><strong>BCO-DMO Processing description:</strong><br />
- Adjusted field/parameter names to comply with BCO-DMO naming conventions<br />
- Added a conventional header with dataset name, PI names, version date<br />
- Changed species name from Colophyllia natans to Colpophyllia natans (misspelling)</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact