http://lod.bco-dmo.org/id/dataset/875543
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2022-06-10
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Abundance and percent cover of macroalgae at Cabritte Horn (St.John, US Virgin Islands) from 1992-2020
2022-06-10
publication
2022-06-10
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2022-06-16
publication
https://doi.org/10.26008/1912/bco-dmo.875543.1
Peter J. Edmunds
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Edmunds, P. J. (2022) Abundance and percent cover of macroalgae at Cabritte Horn (St.John, US Virgin Islands) from 1992-2020. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-06-10 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.875543.1 [access date]
Macroalgae cover (%) at Cabritte Horn on St. John, USVI Dataset Description: Methods and Sampling: <p>Abundance of macroalgae was examined by measuring percent cover at Cabritte Horn on the south shore of St. John, US Virgin Islands across three decades.&nbsp; Photographic sampling of quadrats was performed annually from 1992 to 2020&nbsp;using cameras mounted on a framer at a fixed height above the reef.&nbsp; Color slide film was used from 1992–2000 (and digitized at 4000 dpi), with digital photography implemented in 2001. Photoquadrats were recorded at random positions along the transect, which was 20 meters long from 1992–1999&nbsp;and 40 meters long from 2000 onward when the sample size was increased to ~40 photoquadrats per year.&nbsp; &nbsp;</p>
<p>For details on association with <em>Millepora spp</em>., see Related Datasets section below.&nbsp; To access images, see Related Publications section below for link to Coral Image Downloads and Viewer&nbsp;(Cabritte Horn images under "Random Sites") &nbsp;&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-2019992 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=2019992
completed
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Latitude
Longitude
Sampling_Date
Quadrat_number
Percent_cover_macroalgae
Location
Camera
Nikonos V film camera
Nikon Coolpix 990
Nikon DSLR digital camera
theme
None, User defined
latitude
longitude
date
sample identification
percent coverage
region
instrument model
featureType
BCO-DMO Standard Parameters
Camera
Camera
Camera
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
RUI: Pattern and process in five decades of change on Caribbean reefs
http://coralreefs.csun.edu/
RUI: Pattern and process in five decades of change on Caribbean reefs
<p><strong>This project has been supported by continuing grants:</strong><br />
OCE-2019992 "RUI: Pattern and process in four decades of change on Caribbean reefs" (2020-2026)<br />
OCE-2546549 "RUI Pattern and process in five decades of change on Caribbean reefs" (2026-2029)</p>
<p><strong>NSF award OCE-2546549 project summary:</strong></p>
<p><strong>Overview</strong></p>
<p>This proposal focuses on American coral reefs in the United States Virgin Islands, most of which are trending towards persistent low coral colony abundances. This is a conspicuous aspect of the coral reef crisis, and while much is known of the disturbances causing corals to die, little is known about the ecological implications of low coral abundance. This project leverages four decades of research in St. John by using multiple sites to test five hypotheses addressing mechanisms preventing depleted coral populations from increasing in size, and they are developed in a hierarchical framework to advance basic ecology, and enhance understanding of coral reefs and the ecological processes structuring marine communities in the Anthropocene. The project is mensurative because it is conducted in an MPA, but its scope is broadened through: (a) analyses of algal symbionts (Symbiodiniaceae) with co PI, Cunning (Shedd Aquarium), (b) by extending the coral reef time-series from 40 to 43 yrs, and (c) applying wavelet analyses to the time-series. Three years of funding will support 1 mo/y of fieldwork, 11 mo/y of analysis, QA/QC, graduate training, a one year postdoc, outreach, and manuscript preparation. This RUI proposal is targeting the OCE call NSF PD 23-1650.</p>
<p><strong>Intellectual merit</strong></p>
<p>The intellectual merits lie in the <em>hypotheses</em> focused on the mechanisms leading to persistent low abundance coral communities. This project is<strong> </strong>designed around a conceptual model that preserves the integrity of a 43 yr time series and tests 5 integrated hypotheses addressing four science needs: (1) advancing basic ecology, (2) leveraging of existing data to realize emergent properties, (3) serving data to end users, and (4) outreach benefitting American stake holders. Over three years, fieldwork and analyses will address: H<sub>1 </sub>Coral reef community structure is converging to a stable low coral abundance state; <strong>H<sub>2</sub></strong>. The impact of disturbances is mediated by the spatial structuring of community dynamics, and the expression of portfolio effects<strong>; H<sub>3</sub> </strong>Intensification of the coral recruitment ‘bottleneck’ and its gradual transition to settlement failure; <strong>H<sub>4</sub></strong> Declining populations sizes of echinoids limit the formation of grazing halos in which corals settle; <strong>H<sub>5</sub></strong> Persistence of low abundance coral communities is favored by changes in the symbiodiniacaea complement.</p>
<p><strong>Broader impacts</strong></p>
<p>This project will advance discoverability of time-series data in the public domain, student mentoring and experiential fieldwork, research on the causes of changes affecting marine communities, and in-person outreach at schools in California an Illinois, the University of the Virgin Islands, and the Friends of the VI National Park. Open access to high resolution data quantifying coral reefs over five decades is a critical community need to which this project will respond by placing in > 14,000 photoquadrats in the public domain (1987-present). Up to five graduate (MS) students will be mentored in marine science through fieldwork and lab analysis, and one REU students will be supported in a graduate mentoring framework. At middle schools, an “aquarium library” program will place marine animals in classrooms for 2–3 weeks in collaboration with the non-profit organization, ‘Underwater Zoo’. At high schools, ‘marine biology clubs’ will address project themes, provide research opportunities, and entrain teachers in field trips. In the field, teachers will conduct research leading to publications and will lead outreach activities with children in the junior ranger program administered by the Friends of the VI National Park. The efficacy of outreach tasks will be assessed through pre/post surveys and questionnaires administered using Google forms by teachers at partner schools. The results of assessment will be used to tune project deliverable to better meet the needs of the outreach audience.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
<p><strong>Related Projects:</strong></p>
<ul>
<li>Affiliated with MCR-LTER - <a href="https://www.bco-dmo.org/project/2222">https://www.bco-dmo.org/project/2222</a></li>
<li>Serves as a new project that builds on NSF DEB-1350146 - RUI-LTREB Renewal: Three decades of coral reef community dynamics in St. John, USVI: 2014-2019 - <a href="https://www.bco-dmo.org/project/734983">https://www.bco-dmo.org/project/734983</a></li>
<li>Overlaps with OCE 17-56678 (which focuses on soft corals with H. Lasker) - Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals - <a href="https://www.bco-dmo.org/project/752508">https://www.bco-dmo.org/project/752508</a></li>
<li>LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019 - <a href="https://www.bco-dmo.org/project/2272">https://www.bco-dmo.org/project/2272</a></li>
<li>RUI: Pattern and process in four decades of change on Caribbean reefs - <a href="https://www.bco-dmo.org/project/835192">https://www.bco-dmo.org/project/835192</a></li>
<li>RAPID: Hurricane Irma: Effects of repeated severe storms on shallow Caribbean reefs and their changing ecological resilience - <a href="https://www.bco-dmo.org/project/722163">https://www.bco-dmo.org/project/722163</a></li>
</ul>
St John Coral Reefs
largerWorkCitation
project
eng; USA
biota
oceans
-64.7219
-64.7219
18.3075
18.3075
1992-05-30
2020-08-06
United States Virgin Islands, St. John: 18.318, -64.7253
0
BCO-DMO catalogue of parameters from Abundance and percent cover of macroalgae at Cabritte Horn (St.John, US Virgin Islands) from 1992-2020
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/875571.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/875572.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude</p>
http://lod.bco-dmo.org/id/dataset-parameter/875573.rdf
Name: Sampling_Date
Units: unitless
Description: <p>Date of photographic quadrat sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/875574.rdf
Name: Quadrat_number
Units: unitless
Description: <p>Quadrat number</p>
http://lod.bco-dmo.org/id/dataset-parameter/875575.rdf
Name: Percent_cover_macroalgae
Units: percent (%)
Description: <p>Percentage cover of macroalgae</p>
http://lod.bco-dmo.org/id/dataset-parameter/875576.rdf
Name: Location
Units: unitless
Description: <p>Geographical location</p>
http://lod.bco-dmo.org/id/dataset-parameter/875577.rdf
Name: Camera
Units: unitless
Description: <p>Type of camera and lens used for photographic quadrat sampling</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
103108
https://darchive.mblwhoilibrary.org/bitstream/1912/29019/1/dataset-875543_percent-cover-macroalgae-cabritte-horn__v1.tsv
download
https://doi.org/10.26008/1912/bco-dmo.875543.1
download
onLine
dataset
<p>Abundance of macroalgae was examined by measuring percent cover at Cabritte Horn on the south shore of St. John, US Virgin Islands across three decades.&nbsp; Photographic sampling of quadrats was performed annually from 1992 to 2020&nbsp;using cameras mounted on a framer at a fixed height above the reef.&nbsp; Color slide film was used from 1992–2000 (and digitized at 4000 dpi), with digital photography implemented in 2001. Photoquadrats were recorded at random positions along the transect, which was 20 meters long from 1992–1999&nbsp;and 40 meters long from 2000 onward when the sample size was increased to ~40 photoquadrats per year.&nbsp; &nbsp;</p>
<p>For details on association with <em>Millepora spp</em>., see Related Datasets section below.&nbsp; To access images, see Related Publications section below for link to Coral Image Downloads and Viewer&nbsp;(Cabritte Horn images under "Random Sites") &nbsp;&nbsp;</p>
Specified by the Principal Investigator(s)
<p>The photoquadrats were used to determine the percentage cover of benthic space holders using CoralNet software (Williams et al, 2019; Chen et al, 2021) with 200 random points on each image that were manually annotated. All aspects of the benthic community were quantified, but here only the cover of macroalgae is reported.</p>
<p><u>Statistical analyses</u><br />
Macroalgal cover (arcsine transformed), the morphology of Millepora sp. (log transformed), and temperature were compared among years using one way ANOVAs with Bonferonni post hoc analyses to compare between years (using Systat 13 software).&nbsp;</p>
<p><u>BCO-DMO processing</u><br />
- added columns for latitude and longitude<br />
- converted Date to YMD format<br />
- added columns for location and camera type<br />
-&nbsp;added conventional header with dataset name, PI name, version date<br />
- modified parameter names to conform with BCO-DMO naming conventions</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Nikonos V film camera
Nikonos V film camera
PI Supplied Instrument Name: Nikonos V film camera PI Supplied Instrument Description:A Nikonos V film camera with 28 mm lens was used in the years 1992-2000 Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
Nikon Coolpix 990
Nikon Coolpix 990
PI Supplied Instrument Name: Nikon Coolpix 990 PI Supplied Instrument Description:A Nikon Coolpix 990 digital camera with 8-24 mm lens was used in the years 2001-2005 Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/
Nikon DSLR digital camera
Nikon DSLR digital camera
PI Supplied Instrument Name: Nikon DSLR digital camera PI Supplied Instrument Description:A Nikon DSLR D70/DX digital camera with 18-70 mm lens was used in the years 2006-2010
A Nikon DSLR D90/DX digital camera with 18-70 mm lens was used in the year 2011
A Nikon DSLR D7000/DX digital camera with 18-70 mm lens was used in the years 2012-2015
A Nikon DSLR D810/FX digital camera with 18-35 mm lens was used in the years 2016-2021 Instrument Name: Camera Instrument Short Name:camera Instrument Description: All types of photographic equipment including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/311/