http://lod.bco-dmo.org/id/dataset/884208
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2022-11-23
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Physiology color score extracted from pictures taken during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.
2022-11-23
publication
2022-11-23
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2023-02-07
publication
https://doi.org/10.26008/1912/bco-dmo.884208.1
Hollie Putnam
University of Rhode Island
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Strand, E., Putnam, H. (2023) Physiology color score extracted from pictures taken during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2022-11-23 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.884208.1 [access date]
Heatwave Experiment: Color Score Physiology Dataset Description: Methods and Sampling: <p>Corals sampled at six reefs within Kāne'ohe Bay, O'ahu, Hawai'i:</p>
<p>1.) USA: Hawaii HIMB: 21.436056, -157.786861<br />
2.) USA: Hawaii Reef.11.13: 21.450806, -157.794944<br />
3.) USA: Hawaii Reef.35.36: 21.473889, -157.833667<br />
4.) USA: Hawaii Reef.18: 21.450806, -157.811139<br />
5.) USA: Hawaii Lilipuna.Fringe: 21.429417, -157.791111<br />
6.) USA: Hawaii Reef.42.43: 21.477194, -157.826889</p>
<p>Experiment conducted at the Hawai'i Institute of Marine Biology.</p>
<p>To assess tissue color change over time, each fragment was photographed once a week (16 timepoints in 4 month experimental setup) with a red, blue, green color standard ruler.</p>
<p>&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1756623 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1756623
completed
Hollie Putnam
University of Rhode Island
808-554-1462
120 Flagg Rd.
Kingston
RI
02881
USA
hputnam@uri.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Number
Site_Name
Site_Latitude
Site_Longitude
Plug_ID
Species
ANALYSIS
Timepoint
Treatment
Tank
Temperature
CO2
Bleaching_Score
Blch_Time
Ruler with three red, blue, and green colored bands
theme
None, User defined
number
site
latitude
longitude
sample identification
species scientific name (binomial)
experiment type
sample time
treatment
tank
sample description
featureType
BCO-DMO Standard Parameters
ruler
Underwater Camera
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration
https://sites.rutgers.edu/coralbase/
NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration
<p>NSF Abstract:</p>
<p>The remarkable success of coral reefs is explained by interactions of the coral animal with its symbiotic microbiome that is comprised of photosynthetic algae and bacteria. This total organism, or "holobiont", enables high ecosystem biodiversity and productivity in coral reefs. These ecosystems are, however, under threat from a rapidly changing environment. This project aims to integrate information from the cellular to organismal level to identify key mechanisms of adaptation and acclimatization to environmental stress. Specific areas to be investigated include the role of symbionts and of epigenetics (molecular "marks" on coral DNA that regulate gene expression). These aspects will be studied in Hawaiian corals to determine whether they explain why some individuals are sensitive or resistant to environmental perturbation. Results from the proposed project will also provide significant genomic resources that will contribute to fundamental understanding of how complex biological systems generate emergent (i.e., unexpected) properties when faced with fluctuating environments. Broader impacts will extend beyond scientific advancements to include postdoctoral and student training in Science, Technology, Engineering and Mathematics (STEM). Data generated in the project will be used to train university students and do public outreach through live videos of experimental work, and short stop-action animations for topics such as symbiosis, genomics, epigenetics, inheritance, and adaptation. The research approaches and results will be shared with the public in Hawaii through the Hawaii Institute of Marine Biology education department and presentations at Hawaiian hotels, as well as at Rutgers University through its 4-H Rutgerscience Saturdays and 4-H Rutgers Summer Science Programs.</p>
<p>Symbiosis is a complex and ecologically integrated interaction between organisms that provides emergent properties key to their survival. Such is the case for the relationship between reef-building corals and their microbiome, a meta-organism, where nutritional and biogeochemical recycling provide the necessary benefits that fuel high reef productivity and calcification. The rapid warming and acidification of our oceans threatens this symbiosis. This project addresses how relatively stress resistant and stress sensitive corals react to the environmental perturbations of increased temperature and reduced pH. It utilizes transcriptomic, epigenetic, and microbial profiling approaches, to elucidate how corals respond to environmental challenges. In addition to this profiling, work by the BSF Israeli partner will implement powerful analytical techniques such as network theory to detect key transcriptional hubs in meta-organisms and quantify biological integration. This work will generate a stress gene inventory for two ecologically important coral species and a (epi)genome and microbiome level of understanding of how they respond to the physical environment. Acknowledgment of a role for epigenetic mechanisms in corals overturns the paradigm of hardwired genetic control and highlights the interplay of genetic and epigenetic variation that may result in emergent evolutionary and ecologically relevant properties with implications for the future of reefs. Furthermore, clarifying the joint contribution of the microbiome and host in response to abiotic change will provide an important model in metazoan host-microbiome biotic interactions.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Holobiont Integration
largerWorkCitation
project
eng; USA
oceans
-157.833667
-157.786861
21.429417
21.477194
2018-09-22
2018-11-17
Hawaii, Rhode Island, New Jersey, Israel
0
BCO-DMO catalogue of parameters from Physiology color score extracted from pictures taken during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/885086.rdf
Name: Number
Units: unitless
Description: <p>Record number</p>
http://lod.bco-dmo.org/id/dataset-parameter/885087.rdf
Name: Site_Name
Units: unitless
Description: <p>The reef location where that sample was collected (6 options total). </p>
http://lod.bco-dmo.org/id/dataset-parameter/885088.rdf
Name: Site_Latitude
Units: decimal degrees
Description: <p>Latitude of coral sampling site, south is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/885089.rdf
Name: Site_Longitude
Units: decimal degrees
Description: <p>Longitude of coral sampling site, west is negative</p>
http://lod.bco-dmo.org/id/dataset-parameter/885090.rdf
Name: Plug_ID
Units: unitless
Description: <p>The individual coral fragment ID number</p>
http://lod.bco-dmo.org/id/dataset-parameter/885091.rdf
Name: Species
Units: unitless
Description: <p>Coral host species: Montipora capitata or Pocillopora acuta</p>
http://lod.bco-dmo.org/id/dataset-parameter/885092.rdf
Name: ANALYSIS
Units: unitless
Description: <p>Physiology for all entries indicating that fragment was sampled for physiology</p>
http://lod.bco-dmo.org/id/dataset-parameter/885093.rdf
Name: Timepoint
Units: unitless
Description: <p>The sampling time point; at what point during the experiment was that fragment sampled</p>
http://lod.bco-dmo.org/id/dataset-parameter/885094.rdf
Name: Treatment
Units: unitless
Description: <p>Temperature and pCO2 treatment exposure indication. Ambient Temperature Ambient pCO2 (ATAC), Ambient Temperature High pCO2 (ATHC), High Temperature Ambient pCO2 (HTAC) or High Temperature High pCO2 (HTHC).</p>
http://lod.bco-dmo.org/id/dataset-parameter/885095.rdf
Name: Tank
Units: unitless
Description: <p>The tank number that coral fragment was sampled from (12 options; 3 tanks per treatment).</p>
http://lod.bco-dmo.org/id/dataset-parameter/885096.rdf
Name: Temperature
Units: unitless
Description: <p>Temperature treatment indication: high or ambient.</p>
http://lod.bco-dmo.org/id/dataset-parameter/885097.rdf
Name: CO2
Units: unitless
Description: <p>pCO2 treatment indication: high or ambient.</p>
http://lod.bco-dmo.org/id/dataset-parameter/885098.rdf
Name: Bleaching_Score
Units: unitless
Description: <p>Calculated PC1 value from Principal Components Analysis used as a "Bleaching Score" or "Color Score"</p>
http://lod.bco-dmo.org/id/dataset-parameter/885099.rdf
Name: Blch_Time
Units: unitless
Description: <p>Time point for this measurement. </p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
382581
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/eeff490d-23d7-580c-9209-af4a0cdde48b/content
download
https://doi.org/10.26008/1912/bco-dmo.884208.1
download
onLine
dataset
<p>Corals sampled at six reefs within Kāne'ohe Bay, O'ahu, Hawai'i:</p>
<p>1.) USA: Hawaii HIMB: 21.436056, -157.786861<br />
2.) USA: Hawaii Reef.11.13: 21.450806, -157.794944<br />
3.) USA: Hawaii Reef.35.36: 21.473889, -157.833667<br />
4.) USA: Hawaii Reef.18: 21.450806, -157.811139<br />
5.) USA: Hawaii Lilipuna.Fringe: 21.429417, -157.791111<br />
6.) USA: Hawaii Reef.42.43: 21.477194, -157.826889</p>
<p>Experiment conducted at the Hawai'i Institute of Marine Biology.</p>
<p>To assess tissue color change over time, each fragment was photographed once a week (16 timepoints in 4 month experimental setup) with a red, blue, green color standard ruler.</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
<p>ImageJ® (version 1.51) was used to extract the mean blue, green, and red color score for each coral fragment and these values were normalized to the mean of the red, blue, and green color standards. The color score was quantified as Principal Component 1 from principal component analysis (PCA) sensu (Edmunds, Gates and Gleason, 2003).&nbsp;</p>
<p>BCO-DMO Processing Notes:<br />
* Added latitude and longitude of reef locations to the dataset</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Ruler with three red, blue, and green colored bands
Ruler with three red, blue, and green colored bands
PI Supplied Instrument Name: Ruler with three red, blue, and green colored bands PI Supplied Instrument Description:Ruler with three red, blue, and green colored bands Instrument Name: ruler Instrument Short Name: Instrument Description: A device used for measuring or for drawing straight lines, consisting of an elongated piece of rigid or semi-rigid material marked with units for measurement. Device that allows one or more physical dimensions of a sample or specimen to be determined by visible comparison against marked graduations in units of measurement of dimension length.
PI Supplied Instrument Name: Instrument Name: Underwater Camera Instrument Short Name: Instrument Description: All types of photographic equipment that may be deployed underwater including stills, video, film and digital systems. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/180/