http://lod.bco-dmo.org/id/dataset/884738
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2022-12-02
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Temperature data measured during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i
2023-01-31
publication
2023-01-31
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2023-01-31
publication
https://doi.org/10.26008/1912/bco-dmo.884738.1
Hollie Putnam
University of Rhode Island
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Strand, E., Putnam, H. (2023) Temperature data measured during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-01-31 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.884738.1 [access date]
Heatwave Experiment: Temperature HOBO Logger Dataset Description: Methods and Sampling: <p>Corals sampled at six reefs within Kāne'ohe Bay, O'ahu, Hawai'i:</p>
<p>1.) USA: Hawaii HIMB: 21.436056, -157.786861<br />
2.) USA: Hawaii Reef.11.13: 21.450806, -157.794944<br />
3.) USA: Hawaii Reef.35.36: 21.473889, -157.833667<br />
4.) USA: Hawaii Reef.18: 21.450806, -157.811139<br />
5.) USA: Hawaii Lilipuna.Fringe: 21.429417, -157.791111<br />
6.) USA: Hawaii Reef.42.43: 21.477194, -157.826889</p>
<p>Experiment conducted at the Hawai'i Institute of Marine Biology.</p>
<p><em><strong>Experimental Tank Setup: </strong></em>Treatment conditions (n=3 tanks treatment-1) were randomly assigned to twelve outdoor mesocosm tanks (122 cm x 122 cm x 30 cm; 510 L). Flow rates, measured daily with a graduated cylinder and timer, averaged 84.36 ± 1.20 mL second-1 (n=826), providing full mesocosm tank turnover every ~2 hours. Mesocosm tanks were 60% shaded from full irradiance, and photosynthetically active radiation was measured continuously with the Apex cosine corrected PAR Sensor (accuracy = ± 5%) that was cross calibrated to the Li-Cor cosine corrected PAR sensor (LI-193). Additionally, light values (PAR) from six different positions in each tank were compared to determine spatial differences within each tank. There was no significant difference in light between positions in each tank (n=4 position-1 tank-1). Based on these results, light was measured in the center of the tank ~daily for the duration of the experiment using the Li-Cor 193 spherical underwater quantum sensor. To further reduce any potential position effects with respect to incoming water, heater position, or bubble stream, the positions of the coral fragments in the tank were changed weekly.</p>
<p dir="ltr"><em><strong>Experimental temperature conditions: </strong></em>Temperature treatment conditions were programmed to mimic the natural daily fluctuations (0.75 °C ± 0.06) of the environment at the collection sites in Kāneʻohe Bay, Hawaiʻi (NOAA Moku o Loʻe Buoy data from September 2018). Based on these data, high temperature treatment fluctuated between ~29-30°C to reflect previous marine heatwaves in Kāneʻohe Bay, Hawaiʻi (+2°C above ambient temperature). Temperature was monitored with Apex Extended Life Temperature Probes (accuracy = ± 0.05 °C, Neptune Systems) and temperature loggers (HOBO Water Temp Pro v2, accuracy = ±0.21°C, resolution = 0.02°C, Onset Computer Corp) that were placed in each tank at the same height as the coral fragments for the duration of the experiment and logged temperature at 10 minute intervals. Temperature was separately controlled by submersible heaters (ProHeat D-1500 Heater Controllers, precision ± 1°C) due to the electrical demand of the heaters. Ambient temperature treatments were not controlled, and thus reflected the natural conditions of Kāneʻohe Bay.&nbsp;</p>
<p>&nbsp;</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1756623 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1756623
completed
Hollie Putnam
University of Rhode Island
808-554-1462
120 Flagg Rd.
Kingston
RI
02881
USA
hputnam@uri.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Treatment
Date
N
Temperature
sd
se
ci
HOBO Water Temp Pro v2 Onset Computer Corp
theme
None, User defined
treatment
date
number of bins
temperature of sample or a generic measurement (not in-situ water temp)
standard deviation
standard error
confidence_interval
featureType
BCO-DMO Standard Parameters
Onset HOBO Pro v2 temperature logger
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration
https://sites.rutgers.edu/coralbase/
NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration
<p>NSF Abstract:</p>
<p>The remarkable success of coral reefs is explained by interactions of the coral animal with its symbiotic microbiome that is comprised of photosynthetic algae and bacteria. This total organism, or "holobiont", enables high ecosystem biodiversity and productivity in coral reefs. These ecosystems are, however, under threat from a rapidly changing environment. This project aims to integrate information from the cellular to organismal level to identify key mechanisms of adaptation and acclimatization to environmental stress. Specific areas to be investigated include the role of symbionts and of epigenetics (molecular "marks" on coral DNA that regulate gene expression). These aspects will be studied in Hawaiian corals to determine whether they explain why some individuals are sensitive or resistant to environmental perturbation. Results from the proposed project will also provide significant genomic resources that will contribute to fundamental understanding of how complex biological systems generate emergent (i.e., unexpected) properties when faced with fluctuating environments. Broader impacts will extend beyond scientific advancements to include postdoctoral and student training in Science, Technology, Engineering and Mathematics (STEM). Data generated in the project will be used to train university students and do public outreach through live videos of experimental work, and short stop-action animations for topics such as symbiosis, genomics, epigenetics, inheritance, and adaptation. The research approaches and results will be shared with the public in Hawaii through the Hawaii Institute of Marine Biology education department and presentations at Hawaiian hotels, as well as at Rutgers University through its 4-H Rutgerscience Saturdays and 4-H Rutgers Summer Science Programs.</p>
<p>Symbiosis is a complex and ecologically integrated interaction between organisms that provides emergent properties key to their survival. Such is the case for the relationship between reef-building corals and their microbiome, a meta-organism, where nutritional and biogeochemical recycling provide the necessary benefits that fuel high reef productivity and calcification. The rapid warming and acidification of our oceans threatens this symbiosis. This project addresses how relatively stress resistant and stress sensitive corals react to the environmental perturbations of increased temperature and reduced pH. It utilizes transcriptomic, epigenetic, and microbial profiling approaches, to elucidate how corals respond to environmental challenges. In addition to this profiling, work by the BSF Israeli partner will implement powerful analytical techniques such as network theory to detect key transcriptional hubs in meta-organisms and quantify biological integration. This work will generate a stress gene inventory for two ecologically important coral species and a (epi)genome and microbiome level of understanding of how they respond to the physical environment. Acknowledgment of a role for epigenetic mechanisms in corals overturns the paradigm of hardwired genetic control and highlights the interplay of genetic and epigenetic variation that may result in emergent evolutionary and ecologically relevant properties with implications for the future of reefs. Furthermore, clarifying the joint contribution of the microbiome and host in response to abiotic change will provide an important model in metazoan host-microbiome biotic interactions.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
Holobiont Integration
largerWorkCitation
project
eng; USA
oceans
-157.833667
-157.786861
21.429417
21.477194
2018-09-22
2018-11-17
Hawaii, Rhode Island, New Jersey, Israel
0
BCO-DMO catalogue of parameters from Temperature data measured during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/886189.rdf
Name: Treatment
Units: units
Description: <p>Tank treatment condition </p>
http://lod.bco-dmo.org/id/dataset-parameter/886190.rdf
Name: Date
Units: units
Description: <p>Date of measurement summary</p>
http://lod.bco-dmo.org/id/dataset-parameter/886191.rdf
Name: N
Units: units
Description: <p>Sample size for that date (Every 10 minutes in each tank; 3 tanks per treatment)</p>
http://lod.bco-dmo.org/id/dataset-parameter/886192.rdf
Name: Temperature
Units: degrees Celsius (°C)
Description: <p>date of measurement summary</p>
http://lod.bco-dmo.org/id/dataset-parameter/886193.rdf
Name: sd
Units: degrees Celsius (°C)
Description: <p>Standard deviation </p>
http://lod.bco-dmo.org/id/dataset-parameter/886194.rdf
Name: se
Units: degrees Celsius (°C)
Description: <p>Standard error </p>
http://lod.bco-dmo.org/id/dataset-parameter/886195.rdf
Name: ci
Units: degrees Celsius (°C)
Description: <p>Confidence Interval </p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
22560
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/0399c2de-7a01-5774-8741-4314df255326/content
download
https://doi.org/10.26008/1912/bco-dmo.884738.1
download
onLine
dataset
<p>Corals sampled at six reefs within Kāne'ohe Bay, O'ahu, Hawai'i:</p>
<p>1.) USA: Hawaii HIMB: 21.436056, -157.786861<br />
2.) USA: Hawaii Reef.11.13: 21.450806, -157.794944<br />
3.) USA: Hawaii Reef.35.36: 21.473889, -157.833667<br />
4.) USA: Hawaii Reef.18: 21.450806, -157.811139<br />
5.) USA: Hawaii Lilipuna.Fringe: 21.429417, -157.791111<br />
6.) USA: Hawaii Reef.42.43: 21.477194, -157.826889</p>
<p>Experiment conducted at the Hawai'i Institute of Marine Biology.</p>
<p><em><strong>Experimental Tank Setup: </strong></em>Treatment conditions (n=3 tanks treatment-1) were randomly assigned to twelve outdoor mesocosm tanks (122 cm x 122 cm x 30 cm; 510 L). Flow rates, measured daily with a graduated cylinder and timer, averaged 84.36 ± 1.20 mL second-1 (n=826), providing full mesocosm tank turnover every ~2 hours. Mesocosm tanks were 60% shaded from full irradiance, and photosynthetically active radiation was measured continuously with the Apex cosine corrected PAR Sensor (accuracy = ± 5%) that was cross calibrated to the Li-Cor cosine corrected PAR sensor (LI-193). Additionally, light values (PAR) from six different positions in each tank were compared to determine spatial differences within each tank. There was no significant difference in light between positions in each tank (n=4 position-1 tank-1). Based on these results, light was measured in the center of the tank ~daily for the duration of the experiment using the Li-Cor 193 spherical underwater quantum sensor. To further reduce any potential position effects with respect to incoming water, heater position, or bubble stream, the positions of the coral fragments in the tank were changed weekly.</p>
<p dir="ltr"><em><strong>Experimental temperature conditions: </strong></em>Temperature treatment conditions were programmed to mimic the natural daily fluctuations (0.75 °C ± 0.06) of the environment at the collection sites in Kāneʻohe Bay, Hawaiʻi (NOAA Moku o Loʻe Buoy data from September 2018). Based on these data, high temperature treatment fluctuated between ~29-30°C to reflect previous marine heatwaves in Kāneʻohe Bay, Hawaiʻi (+2°C above ambient temperature). Temperature was monitored with Apex Extended Life Temperature Probes (accuracy = ± 0.05 °C, Neptune Systems) and temperature loggers (HOBO Water Temp Pro v2, accuracy = ±0.21°C, resolution = 0.02°C, Onset Computer Corp) that were placed in each tank at the same height as the coral fragments for the duration of the experiment and logged temperature at 10 minute intervals. Temperature was separately controlled by submersible heaters (ProHeat D-1500 Heater Controllers, precision ± 1°C) due to the electrical demand of the heaters. Ambient temperature treatments were not controlled, and thus reflected the natural conditions of Kāneʻohe Bay.&nbsp;</p>
<p>&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
HOBO Water Temp Pro v2 Onset Computer Corp
HOBO Water Temp Pro v2 Onset Computer Corp
PI Supplied Instrument Name: HOBO Water Temp Pro v2 Onset Computer Corp Instrument Name: Onset HOBO Pro v2 temperature logger Instrument Short Name:HOBO U22-001 Instrument Description: The HOBO Water Temp Pro v2 temperature logger, manufactured by Onset Computer Corporation, has 12-bit resolution and a precision sensor for ±0.2°C accuracy over a wide temperature range. It is designed for extended deployment in fresh or salt water.
Operation range: -40° to 70°C (-40° to 158°F) in air; maximum sustained temperature of 50°C (122°F) in water
Accuracy: 0.2°C over 0° to 50°C (0.36°F over 32° to 122°F)
Resolution: 0.02°C at 25°C (0.04°F at 77°F)
Response time: (90%) 5 minutes in water; 12 minutes in air moving 2 m/sec (typical)
Stability (drift): 0.1°C (0.18°F) per year
Real-time clock: ± 1 minute per month 0° to 50°C (32° to 122°F)
Additional information (http://www.onsetcomp.com/)
Onset Computer Corporation
470 MacArthur Blvd
Bourne, MA 02532 Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/