http://lod.bco-dmo.org/id/dataset/889539
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2023-02-07
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Bottle chemistry data from hydrothermal vents sampled by CTD rosette during R/V Atlantis cruise AT37-12 in April and May 2017
2023-02-13
publication
2023-02-13
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2023-02-21
publication
https://doi.org/10.26008/1912/bco-dmo.889539.1
Andrew R. Babbin
Massachusetts Institute of Technology
principalInvestigator
Ryan Woosley
Massachusetts Institute of Technology
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Babbin, A. R., Woosley, R., Cinay, T. (2023) Bottle chemistry data from hydrothermal vents sampled by CTD rosette during R/V Atlantis cruise AT37-12 in April and May 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-02-13 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.889539.1 [access date]
Methods and Sampling: <p>This dataset represents bottle chemistry (Nitrite, pH, alkalinity, and oxygen) data that were collected from discrete depths by CTD rosette during the AT37-12 cruise on <em>R/V Atlantis</em> in the southern part of the Eastern Tropical North Pacific (ETNP) in April–May 2017. Samples were acquired using a 24-bottle CTD rosette equipped with temperature, salinity, pressure, and oxygen sensors at 8 stations. We measured nitrite using the Griess method, Nitrate by chemiluminescence detection via vanadium reduction, pH by colorimetric determination, and Total Alkalinity by titration.</p>
<p>Nitrite was measured using an Ocean Optics QEPRO spectrophotometer with a 10-centimeter Starna flow-through quartz cell. Nitrate is reported as the difference from the total nitrogen oxides measured with a Teledyne T200 NOx analyzer with a custom front end for vanadium reduction and nitrite measurement. pH was measured using an Agilent 8454 spectrophotometer with a custom front end for automated syringe injection. Total Alkalinity was measured using a custom total alkalinity titrator built by the lab of Andrew Dickson at UCSD-Scripps Institute for Oceanography.</p>
<p>Further details in Cinay et al. 2022, Global Biogeochemical Cycles</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1559198 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1559198
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1559042 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1559042
completed
Andrew R. Babbin
Massachusetts Institute of Technology
617-253-2181
77 Massachusetts Ave. Bldg. 54-918
Cambridge
MA
02139
USA
babbin@mit.edu
pointOfContact
Ryan Woosley
Massachusetts Institute of Technology
617-253-1984
77 Massachusetts Ave Bldg. 54-1414
Cambridge
MA
02139
USA
rwoosley@mit.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
CRUISEID
STNNBR
SAMPNO
DATE
LATITUDE
LONGITUDE
DEPTH
NITRITE
NITRATE
PH_SWS
TA
SIGMA0
Teledyne T200 NOx analyzer
Ocean Optics QEPro
Agilent 8454
Custom Alkalinity Titrator
theme
None, User defined
Cruise identfier
station
sample identification
date
latitude
longitude
depth
Nitrite
Nitrate
pH
total alkalinity (TA)
sigma-theta potential density
featureType
BCO-DMO Standard Parameters
Chemiluminescence NOx Analyzer
CTD - profiler
Niskin bottle
Spectrophotometer
Spectrophotometer
Titrator
instrument
BCO-DMO Standard Instruments
AT37-12
service
Deployment Activity
East Pacific Rise vent area
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Environmental Drivers of Chemoautotrophic Carbon Production at Deep-Sea Hydrothermal Vents - Comparative Roles of Oxygen and Nitrate
https://osprey.bco-dmo.org/project/685773
Collaborative Research: Environmental Drivers of Chemoautotrophic Carbon Production at Deep-Sea Hydrothermal Vents - Comparative Roles of Oxygen and Nitrate
<p><em>NSF award abstract:</em></p>
<p>Deep-sea hydrothermal vents, first discovered in 1977, are exemplary ecosystems where microbial chemosynthesis rather than photosynthesis is the primary source of organic carbon. Chemosynthetic microorganisms use the energy generated by oxidizing reduced inorganic chemicals contained in the vent fluids, like hydrogen sulfide or hydrogen gas, to convert carbon dioxide (CO2) into cell material. By doing so, they effectively transfer the energy from a geothermal source to higher trophic levels, in the process supporting the unique and fascinating ecosystems that are characterized by high productivity - oases in the otherwise barren deep ocean landscape. While the general view of the functioning of these ecosystems is established, there are still major gaps in our understanding of the microbiology and biogeochemistry of these systems. Particularly lacking are studies measuring rates of microbial activity in situ, which is ultimately needed to understand production of these ecosystems and to assess their impact on global biogeochemical cycles. This project makes use of the Vent-Submersible Incubation Device (Vent-SID), a robotic micro-laboratory that was recently developed and tested in the field. This instrument makes it possible for the first time to determine rates of carbon fixation at both in situ pressures and temperatures, revolutionizing the way we conduct microbial biogeochemical investigations at deep-sea hydrothermal vents. This is an interdisciplinary and collaborative effort between two US and foreign institutions, creating unique opportunities for networking and to foster international collaborations. This will also benefit two graduate students working in the project, who will get exposed to a wide range of instrumentation and scientific fields, facilitating their interdisciplinary education. In collaboration with Dr. Nitzan Resnick, academic dean of The Sage School, an elementary school outreach program will be developed and a long-term partnership with the school established. Further, a cruise blog site to disseminate the research to schools and the broader public will be set up. The results will be the topic of media coverage as well as be integrated into coursework and webpages existing either in the PI's labs or at the institution.</p>
<p>This project is using a recently developed robotic micro-laboratory, the Vent-SID, to measure rates of chemoautotrophic production and to determine the relative importance of oxygen and nitrate in driving chemosynthesis at deep-sea hydrothermal vents at in situ pressures and temperatures and to tackle the following currently unresolved science objectives: 1) obtain in situ rates of chemoautotrophic carbon fixation, 2) obtain in situ nitrate reduction rate measurements, and 3) directly correlate the measurement of these processes with the expression of key genes involved in carbon and energy metabolism. Although recent data suggests that nitrate reduction either to N2 (denitrification) or to NH4+ (dissimilatory reduction of nitrate to ammonium) might be responsible for a significant fraction of chemoautotrophic production, NO3-reduction rates have never been measured in situ at hydrothermal vents. The researchers hypothesize that chemoautrophic growth is strongly coupled to nitrate respiration in vent microbial communities. During a cruise that will take place approximately 12 months into the project (~Feb 2017), the researchers will carry out a total of 4 deployments of the Vent-SID as well as ancillary sampling collection at the 9°46N to 9°53N segment of the East Pacific Rise. They will focus efforts on two diffuse-flow vent sites, "Crab Spa" and "Teddy Bear". "Crab Spa" is a diffuse flow vent site (T: 25°C) that has been used as a model system to gain insights into chemoautotrophic processes and has been frequently sampled over the last several years. This vent site has been very well characterized, both geochemically and microbiologically, providing excellent background data for the proposed process oriented studies. "Teddy Bear" is a diffuse-flow site that was discovered in Jan 2014, and it has a lower temperature (T: 12°C), making it a good comparative site. The researchers will perform a number of short duration time-course incubations to assess the role of different environmental parameters that have been identified as likely key variables (e.g., O2, temperature, NO3-), and to link these process rate measurements to the expression of functional genes using metatranscriptomic analyses. This study will be the first attempt to measure critical metabolic processes of hydrothermal vent microbial assemblages under critical in situ conditions and to assess the quantitative importance of electron donor and acceptor pathways in situ. In the future, it is envisioned that the Vent-SID will become a routine application by the oceanographic community for measuring time series rates of relevant metabolic processes at hydrothermal vents under in situ pressures and vent fluid temperatures.</p>
vent O2 NO3 roles
largerWorkCitation
project
eng; USA
oceans
East Pacific Rise vent area
-104.346
-90
9.341
14.03
2017-04-25
2017-05-12
Deep-Sea hydrothermal vent field at 9 deg N on the East Pacific Rise
0
BCO-DMO catalogue of parameters from Bottle chemistry data from hydrothermal vents sampled by CTD rosette during R/V Atlantis cruise AT37-12 in April and May 2017
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/889783.rdf
Name: CRUISEID
Units: unitless
Description: <p>Cruise identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/889784.rdf
Name: STNNBR
Units: unitless
Description: <p>Station identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/889785.rdf
Name: SAMPNO
Units: unitless
Description: <p>Sample identifier</p>
http://lod.bco-dmo.org/id/dataset-parameter/889786.rdf
Name: DATE
Units: unitless
Description: <p>Date of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/889787.rdf
Name: LATITUDE
Units: decimal degrees
Description: <p>Latitude of sampling site North (South is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/889788.rdf
Name: LONGITUDE
Units: decimal degrees
Description: <p>Longitude of sampling site East (West is negative)</p>
http://lod.bco-dmo.org/id/dataset-parameter/889789.rdf
Name: DEPTH
Units: dbar
Description: <p>Depth of sampling</p>
http://lod.bco-dmo.org/id/dataset-parameter/889790.rdf
Name: NITRITE
Units: micromoles per liter (umol/L)
Description: <p>Nitrite concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/889791.rdf
Name: NITRATE
Units: micromoles per liter (umol/L)
Description: <p>Nitrate concentration</p>
http://lod.bco-dmo.org/id/dataset-parameter/889792.rdf
Name: PH_SWS
Units: unitless
Description: <p>pH, seawater scale</p>
http://lod.bco-dmo.org/id/dataset-parameter/889793.rdf
Name: TA
Units: micromoles per liter (umol/L)
Description: <p>Total alkalinity</p>
http://lod.bco-dmo.org/id/dataset-parameter/889794.rdf
Name: SIGMA0
Units: kilograms per cubic meter
Description: <p>Potential density anomaly at sea surface</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
15596
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/fb2317ab-286e-5c34-9781-a85711318610/content
download
https://doi.org/10.26008/1912/bco-dmo.889539.1
download
onLine
dataset
<p>This dataset represents bottle chemistry (Nitrite, pH, alkalinity, and oxygen) data that were collected from discrete depths by CTD rosette during the AT37-12 cruise on <em>R/V Atlantis</em> in the southern part of the Eastern Tropical North Pacific (ETNP) in April–May 2017. Samples were acquired using a 24-bottle CTD rosette equipped with temperature, salinity, pressure, and oxygen sensors at 8 stations. We measured nitrite using the Griess method, Nitrate by chemiluminescence detection via vanadium reduction, pH by colorimetric determination, and Total Alkalinity by titration.</p>
<p>Nitrite was measured using an Ocean Optics QEPRO spectrophotometer with a 10-centimeter Starna flow-through quartz cell. Nitrate is reported as the difference from the total nitrogen oxides measured with a Teledyne T200 NOx analyzer with a custom front end for vanadium reduction and nitrite measurement. pH was measured using an Agilent 8454 spectrophotometer with a custom front end for automated syringe injection. Total Alkalinity was measured using a custom total alkalinity titrator built by the lab of Andrew Dickson at UCSD-Scripps Institute for Oceanography.</p>
<p>Further details in Cinay et al. 2022, Global Biogeochemical Cycles</p>
Specified by the Principal Investigator(s)
<p><strong>BCO-DMO Processing Description:</strong><br />
- Converted dates to format (YYYY-MM-DD)</p>
<p><br />
&nbsp;</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Teledyne T200 NOx analyzer
Teledyne T200 NOx analyzer
PI Supplied Instrument Name: Teledyne T200 NOx analyzer Instrument Name: Chemiluminescence NOx Analyzer Instrument Short Name: Instrument Description: The chemiluminescence method for gas analysis of oxides of nitrogen relies on the measurement of light produced by the gas-phase titration of nitric oxide and ozone. A chemiluminescence analyzer can measure the concentration of NO/NO2/NOX.
One example is the Teledyne Model T200: https://www.teledyne-api.com/products/nitrogen-compound-instruments/t200
PI Supplied Instrument Name: Instrument Name: CTD - profiler Instrument Short Name: Instrument Description: The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column. The instrument is lowered via cable through the water column. It permits scientists to observe the physical properties in real-time via a conducting cable, which is typically connected to a CTD to a deck unit and computer on a ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or radiometers. It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast.
This term applies to profiling CTDs. For fixed CTDs, see https://www.bco-dmo.org/instrument/869934. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/130/
PI Supplied Instrument Name: Instrument Name: Niskin bottle Instrument Short Name:Niskin bottle Instrument Description: A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc. Community Standard Description: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/
Ocean Optics QEPro
Ocean Optics QEPro
PI Supplied Instrument Name: Ocean Optics QEPro Instrument Name: Spectrophotometer Instrument Short Name:Spectrophotometer Instrument Description: An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB20/
Agilent 8454
Agilent 8454
PI Supplied Instrument Name: Agilent 8454 Instrument Name: Spectrophotometer Instrument Short Name:Spectrophotometer Instrument Description: An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB20/
Custom Alkalinity Titrator
Custom Alkalinity Titrator
PI Supplied Instrument Name: Custom Alkalinity Titrator Instrument Name: Titrator Instrument Short Name:Titrator Instrument Description: Titrators are instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Cruise: AT37-12
AT37-12
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel
AT37-12
Stefan M. Sievert
Woods Hole Oceanographic Institution
http://datadocs.bco-dmo.org/docs/Vent_O2_NO3_Roles/data_docs/AT37-12_Cruise_Report.pdf
Report describing AT37-12
R/V Atlantis
Community Standard Description
International Council for the Exploration of the Sea
R/V Atlantis
vessel