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Ecological monitoring was conducted once a year from 2006-2021 at six different sites in Isla Natividad, Baja California Sur, Mexico. Using SCUBA, trained divers laid 30 x 2 meters belt transects to collect in situ algae, marine invertebrates, fish and uniform point contact (UPC) found along the transect. For algae, divers counted each algae and counted the number of stipes in the organism.

For data access and methodology details for marine invertebrates, fish, and uniform point contact (UPC) data, see the "Related Datasets" section. These four datasets related to each other in the way that the information from algae, invertebrates, fish and UPC was taken from the same site, on the same date, done by the same person.

These four related datasets were collected following the same methodology. Each year from 2006 to 2021, certified divers will lay several 30m transects along kelp forest in different sites in Isla Natividad, Baja California Sur, Mexico. Along the transects, the divers will collect information of algae, invertebrates, fish and UPC (Uniform Point Contact). Each transect was done in one single dive, collecting all the information already mentioned. At the end of the collecting season, the data was checked and transferred to the main dataset.

Instruments:
SCUBA equipment
30m transects
Diving slates

1d:T6dc,* File "COBI_Mexico_Algae_IslaNatividad_2006-2021_EnglishVersion.csv" imported into the BCO-DMO data system with missing data identifiers "NA" and "ND." ** Missing data values are displayed differently based on the file format you download. They are blank in csv files, "NaN" in MatLab files, etc. * Column names adjusted to conform to BCO-DMO naming conventions designed to support broad re-use by a variety of research tools and scripting languages. [Only numbers, letters, and underscores. Can not start with a number * Taxonomic names in this dataset were matched to known identifiers using the World Register of Marine Species (WoRMS) taxa match tool on 2023-09-05. A supplemental species list was added to this dataset containing the name used in the dataset, taxon name match information, and the associated LifeSciences Identifier (LSID) for the currently accepted name as of 2023-09-05. * ISO_DateTime_UTC_Start column added in ISO 8601 format for UTC time zone using the supplied year, month, day, START_TIME (using "Mexico/BajaSur" UTC-7:00/-6:00). Time zone confirmed by submitter. * There was an additional time issue where ID:"5 8 2013 Babencho 10" had start time as "32" and final "38" and ID: "2 8 2014 Punta Prieta 18" had start time as "35" and final "43". Issue discussed with the submitter and the strategy agreed on to leave the rows in dataset but the "times" were replaced with null blank values. * Two final times had additional :00 in the time. Since the rest of the column only reported HH:MM these were change from HH:MM:SS to HH:MM so the column could be typed correctly. ID: "2 8 2020 La Guanera 16" final time "12:24:00" changed to "12:24" ID: "24 9 2021 Babencho 3" final time 12:57:00 changed to "12:57" 1e:T528,This dataset encompasses information about algae transects between 2006 to 2021 in Isla Natividad, Baja California Sur, Mexico. Abundances of algae and the number of stipes of each individual algae can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of algae counted. Ecological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.1f:Tf3f,NSF Award Abstract: Oceanographic variability is increasingly recognized as a driver of change in marine ecosystems. Understanding the effects of this oceanographic variability and its extremes on organisms, populations, ecosystems and the critical services they deliver is of great scientific interest and pivotal for resource management and policy. The overarching goal of this project is to determine how small-scale heterogeneity in habitat quality and site-specific vulnerability to extreme oceanographic conditions might help identify safe spaces and protect coastal populations and fisheries from the detrimental effects of increasing frequency, intensity and durations of extreme oceanographic conditions. This project will combine detailed nearshore oceanographic studies with ecological experiments and coupled biophysical modeling to advance understanding of the drivers of local oceanographic variability and consequent effects on coastal marine animals. The research will determine how multiple, potentially stressful, environmental drivers co-vary in the field and how such variation affects the population dynamics of coastal species. Specifically, this project will provide key insights regarding how changes in ocean acidification, dissolved oxygen and temperature will affect green and pink abalone, an ecologically and economically important resource in the southern California Current. Team members will work with partner non-governmental organizations, resource agencies, and fishing cooperative federations to disseminate results and incorporate data and insights into fisheries management and adaptation initiatives in Baja California, Mexico and in California, USA. This project will also support the training and professional development of underrepresented groups at the high school, undergraduate, graduate and postdoctoral levels through direct involvement in research, intensive courses and international workshops. Despite large-scale drivers and regional perturbations, local variability in ocean conditions may be a major driver of the overall performance and vulnerability of coastal marine species. Research performed as part of this project will test two specific hypotheses: (1) The relative influences of upwelling versus tides, as mediated by coastal geometry and structural complexity associated with rocky reefs and kelp forests act to create high local variability in physical conditions, at scales of 10s-1000s meters; and (2) Local variability in oceanographic conditions results in high local patchiness in the performance of sedentary marine organisms, providing for safe spaces in the face of escalating heat waves, hypoxia, and acidification, that have caused recent mass mortalities in multiple species across the California Current region. Integrated oceanographic-ecological field studies will be conducted along the coast of Baja California, Mexico, using green and pink abalone (Haliotis fulgens, H. corrugata) as model species. Complementary laboratory experiments will evaluate how different exposure regimes (frequency, intensity and duration of high temperature, and/or low dissolved oxygen and acidity events) may affect the demography and persistence of abalone populations under current and future environments. Coupled biophysical and population models will integrate results from the field and laboratory experiments to understand how local variability in ocean conditions affects population dynamics over longer periods. The research will advance the understanding of factors affecting the resilience coastal species by (1) ascertaining how large-scale oceanographic phenomena manifest in ocean conditions (dissolved oxygen, acidity, temperature) at local scales that are most relevant to coastal marine ecosystems and (2) determining the effects of current, and expected future, ocean conditions and variability on important marine species.6:["$","$L1b",null,{"dataset":{"_id":"907321","description":"","problem":"","acquisition":"$1c","processing":"

All the data collected during the ecological monitoring was then transferred to excel files, where it was double checked for typos and errors. Every year since 2006, the data has been collected in one excel file.

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Indicates if the name is the currently accepted name or an unaccepted synonym\nScientificName_accepted, The accepted name (differs from ScientificName column if unaccepted synonym used there)\nLSID_accepted_name, The Life Sciences Identifier (LSID) for the accepted name","filename":"algae_species_list.csv","bytesize":852,"checksum":{"value":"ac4ca57c08e589fd9aa93cd9a9a49f98","Algorithm":{"_id":"190","name":"MD5"}},"mimetype":"text/csv","fileType":{"_id":"192","name":"Comma Separated Values (.csv)"},"isErddap":"","date":"","isPublicDuringEmbargo":false,"primaryDataFile":false,"showTable":true,"restricted":false}],"roles":[{"role":{"_id":"138","name":"Principal Investigator"},"performedBy":{"_id":"701688","name":"Fiorenza Micheli"},"performedAtOrganization":{"_id":"133","name":"Stanford University"}},{"role":{"_id":"140","name":"Co-Principal Investigator"},"performedBy":{"_id":"559923","name":"Clifton Brock Woodson"},"performedAtOrganization":{"_id":"86","name":"University of Georgia"}},{"role":{"_id":"130","name":"Scientist"},"performedBy":{"_id":"907330","name":"Arturo Hernández-Velasco"},"performedAtOrganization":{"_id":"907332","name":"Comunidad y Biodiversidad, A.C."}},{"role":{"_id":"130","name":"Scientist"},"performedBy":{"_id":"907328","name":"Carolina Olguín Jacobson"},"performedAtOrganization":{"_id":"133","name":"Stanford University"}},{"role":{"_id":"130","name":"Scientist"},"performedBy":{"_id":"907333","name":"Jorge Torre"},"performedAtOrganization":{"_id":"907332","name":"Comunidad y Biodiversidad, A.C."}},{"role":{"_id":"135","name":"Technician"},"performedBy":{"_id":"907336","name":"Alfonso Romero"},"performedAtOrganization":{"_id":"907332","name":"Comunidad y Biodiversidad, A.C."}},{"role":{"_id":"145","name":"BCO-DMO Data Manager"},"performedBy":{"_id":"643627","name":"Amber D. 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identification number

","units":{"_id":"","name":"unitless"},"type":{"_id":"2000","name":"individual","description":"

Individual Number or Individual Id. Used to identify individual specimens in various experiments

"}},{"_id":"913697","name":"DAY","format":"","frictionlessType":"integer","description":"

day when monitoring was conducted

","units":{"_id":"","name":"unitless"},"type":{"_id":"1113","name":"day","description":"

day of month; numeric 1 to 31

"}},{"_id":"913698","name":"MONTH","format":"","frictionlessType":"integer","description":"

month when monitoring was conducted

","units":{"_id":"","name":"unitless"},"type":{"_id":"1115","name":"month","description":"

Month of year; numeric 1 to 12.

"}},{"_id":"913699","name":"YEAR","format":"","frictionlessType":"integer","description":"

year when monitoring was conducted

","units":{"_id":"","name":"unitless"},"type":{"_id":"1062","name":"year","description":"

year, reported as YYYY, e.g. 1995

"}},{"_id":"913700","name":"STATE","format":"","frictionlessType":"string","description":"

State in Mexico: Baja California Sur

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913701","name":"COMMUNITY","format":"","frictionlessType":"string","description":"

The community were the monitoring was done

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913702","name":"SITE","format":"","frictionlessType":"string","description":"

The specific sites were monitoring was done

","units":{"_id":"","name":"unitless"},"type":{"_id":"1124","name":"site","description":"

Sampling site identification.

"}},{"_id":"913703","name":"LAT","format":"","frictionlessType":"number","description":"

latitute

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"730","name":"latitude","description":"

latitude, in decimal degrees, North is positive, negative denotes South; Reported in some datasets as degrees, minutes

"}},{"_id":"913704","name":"LONG","format":"","frictionlessType":"number","description":"

longitude

","units":{"_id":"","name":"decimal degrees"},"type":{"_id":"731","name":"longitude","description":"

longitude, in decimal degrees, East is positive, negative denotes West; Reported in some datsets as degrees, minutes

"}},{"_id":"913705","name":"HABITAT","format":"","frictionlessType":"string","description":"

type of ecosystem where monitoring was conducted

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913706","name":"ZONE","format":"","frictionlessType":"string","description":"

If it was a marine reserve or not: Control (not reserve), Reserve (marine reserve)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913707","name":"PROTECTION","format":"","frictionlessType":"string","description":"

If the site had any type of protection: none, community reserve, fishing refuge zone

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913708","name":"MPA","format":"","frictionlessType":"string","description":"

If there is any type of marine protected area on a national level

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913709","name":"DIVER","format":"","frictionlessType":"string","description":"

The person that did the monitoring

","units":{"_id":"","name":"unitless"},"type":{"_id":"1129","name":"person","description":"

scientist responsible for the data from a given sampling event

"}},{"_id":"913710","name":"START_TIME","format":"","frictionlessType":"string","description":"

initial time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1007","name":"time_local","description":"

time of day, local time, using 2400 clock format

"}},{"_id":"913711","name":"FINAL_TIME","format":"","frictionlessType":"string","description":"

final time of monitoring (HH:MM or HH) in Pacific Time Zone (UTC-8/-7)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1007","name":"time_local","description":"

time of day, local time, using 2400 clock format

"}},{"_id":"913712","name":"ISO_DateTime_UTC_Start","format":"%Y-%m-%dT%H:%MZ","frictionlessType":"datetime","description":"

initial timestamp of monitoring in UTC time zone (ISO 8601 format)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1908","name":"ISO_DateTime_UTC","description":"

Date/Time (UTC) ISO formatted
\nThis standard is based on ISO 8601:2004(E) and takes on any of the following forms:
\n2009-08-30T09:05:00[.xx] (local time)
\n2009-08-30T14:05:00[.xx]Z (UTC time)
\n2009-08-30T14:05:00[.xx]-05:00
\nThe dashes and the colons can be dropped.
\nThe T can also be dropped \"by mutual agreement\", but one needs the trailing Z if the time is UTC.

Sample ISO_datetime_utc:
\n2009-08-30T14:05:00[.xx]Z (UTC time)

Format: YYYY-mm-ddTHH:MM:SS[.xx]Z (UTC time)

"}},{"_id":"913713","name":"START_DEPTH","format":"","frictionlessType":"number","description":"

initial depth

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"808","name":"depth","description":"

Observation/sample depth below the sea surface. Units often reported as: meters, feet.

\nWhen used in a JGOFS/GLOBEC dataset the depth is a best estimate; usually but not always calculated from pressure; calculated either from CTD pressure using Fofonoff and Millard (1982; UNESCO Tech Paper #44) algorithm adjusted for 1980 equation of state for seawater (EOS80) or simply equivalent to nominal depth as recorded during sampling if CTD pressure was unavailable.

"}},{"_id":"913714","name":"FINAL_DEPTH","format":"","frictionlessType":"number","description":"

final depth

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"808","name":"depth","description":"

Observation/sample depth below the sea surface. Units often reported as: meters, feet.

"}},{"_id":"913715","name":"TEMPERATURE","format":"","frictionlessType":"number","description":"

water temperature

","units":{"_id":"","name":"degrees Celcius"},"type":{"_id":"733","name":"temperature","description":"

water temperature at measurement depth

"}},{"_id":"913716","name":"VISIBILITY","format":"","frictionlessType":"number","description":"

visibility description

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913717","name":"CURRENT","format":"","frictionlessType":"string","description":"

current descritpion

","units":{"_id":"","name":"unitless"},"type":{"_id":"1740","name":"site_descrip","description":"

Description or characteristics of a sampling site

"}},{"_id":"913718","name":"TRANSECT","format":"","frictionlessType":"integer","description":"

the number of transect of the monitoring

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"1098","name":"transect","description":"

Transect number or identifier

"}},{"_id":"913719","name":"GENUS","format":"","frictionlessType":"string","description":"

the genus of the species found along the transect on the monitoring

","units":{"_id":"","name":"unitless"},"type":{"_id":"994","name":"taxon","description":"

taxonomic group or entity. This may be a family, class, genus, species, etc.; usually this parameter will contain a mixture of taxonomic entities.

"}},{"_id":"913720","name":"SPECIES","format":"","frictionlessType":"string","description":"

the species found along the transect on the monitoring

","units":{"_id":"","name":"unitless"},"type":{"_id":"994","name":"taxon","description":"

taxonomic group or entity. This may be a family, class, genus, species, etc.; usually this parameter will contain a mixture of taxonomic entities.

"}},{"_id":"913721","name":"ABUNDANCE","format":"","frictionlessType":"integer","description":"

quantity of each species counted along the transect on the monitoring (see DISTANCE column for transect length).

","units":{"_id":"","name":"unitless"},"type":{"_id":"735","name":"abundance","description":"

Amount (number, mass, diversity/species variation) of the specific taxa/group counted per unit area or volume

"}},{"_id":"913722","name":"NUMBER_STIPES","format":"","frictionlessType":"integer","description":"

number of stipes of algae counted in the transect (see DISTANCE for transect length)

","units":{"_id":"","name":"unitless"},"type":{"_id":"1079","name":"count","description":"

Number of items or individuals counted in sample or sample fraction

"}},{"_id":"913723","name":"DISTANCE","format":"","frictionlessType":"integer","description":"

the length of the transect

","units":{"_id":"","name":"meters (m)"},"type":{"_id":"744809","name":"len_track","description":"

The linear distance along which a sample was collected or an observation was made, such as a beach transect length or the distance a net was towed through the water.

"}},{"_id":"913724","name":"EXTRAPOLATION","format":"","frictionlessType":"number","description":"

Extrapolated value of the ABUNDANCE of each species for a 30m transect. Values were calculated to correspond with a 30m sample distance using the formula ABUNDANCE*(DISTANCE/30) .

","units":{"_id":"","name":"unitless"},"type":{"_id":"735","name":"abundance","description":"

Amount (number, mass, diversity/species variation) of the specific taxa/group counted per unit area or volume

"}},{"_id":"913725","name":"EXTRAPOLATION_GUIDES","format":"","frictionlessType":"number","description":"

Extrapolated value of the number of stipes of algae for a 30m transect. Values were calculated to correspond with a 30m sample distance using the formula NUMBER_STIPES*(DISTANCE/30) .

","units":{"_id":"","name":"unitless"},"type":{"_id":"1079","name":"count","description":"

Number of items or individuals counted in sample or sample fraction

"}}],"related_publications":[],"related_datasets":[{"_id":"907373","name":"Ecological monitoring Natividad 2006-2021: UPC","url":"","relation_type":"IsRelatedTo","type_desc":"

The dataset is related to another dataset.

\n","relation_desc":"Datasets collected as part of the same ecological monitoring study performed Isla Natividad off the coast of Baja California Sur, Mexico between 2006-2021.","citation":"Micheli, F., Woodson, C. B., Hernández-Velasco, A., Jacobson, C. O., Torre, J. (2023) Ecological monitoring of marine invertebrates on Isla Natividad from 2006 to 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-08-30 doi:10.26008/1912/bco-dmo.907353.1"}],"services":[{"grouping":"","items":[{"name":"View Data","description":"An in-browser view of the primary tabular data file","url":"https://www.bco-dmo.org/dataset/907321/data/view","contentType":"text/html","actionType":"view"}]},{"grouping":"ERDDAP","items":[{"name":"SUBSET DATA","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.html","contentType":"text/html","actionType":"tool"},{"name":"VIEW TABLE","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.htmlTable","contentType":"text/html","actionType":"view"},{"name":"CSV","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.csv","contentType":"text/csv","actionType":"download"},{"name":"TSV","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.tsv","contentType":"text/tsv","actionType":"download"},{"name":"MATLAB","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.mat","contentType":"text/x-matlab","actionType":"download"},{"name":"netCDF","description":"","url":"https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907321_v1.nc","contentType":"application/x-netcdf","actionType":"download"}]},{"grouping":"Metadata","items":[{"name":"HTML","description":"A simple HTML page of the dataset metadata","url":"https://www.bco-dmo.org/dataset/907321/description","contentType":"text/html","actionType":"view"},{"name":"PDF","description":"A PDF of the HTML dataset metadata","url":"https://www.bco-dmo.org/dataset/907321/Dataset_description.pdf","contentType":"application/pdf","actionType":"download"},{"name":"ISO 19115-2 (NOAA Profile)","description":"","url":"https://www.bco-dmo.org/dataset/907321/iso","contentType":"application/xml","actionType":"download"}]}],"programs":[],"projects":[{"_id":"705547","name":"Collaborative Research: Evaluating how abalone populations in the California Current are structured by the interplay of large-scale oceanographic forcing and nearshore variability","acronym":"Abalone Safe Places","description":"$1f"}],"archives":[{"id_value":"10.26008/1912/bco-dmo.907321.1","url":"https://doi.org/10.26008/1912/bco-dmo.907321.1","date_assigned":"2023-11-16","version_date":"2023-08-29","archiver":"Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)","archiver_id":"272"}],"license":{"name":"Creative Commons Attribution 4.0","id":"CC-BY-4.0","uri":"https://creativecommons.org/licenses/by/4.0/","spdxUri":"https://spdx.org/licenses/CC-BY-4.0"},"metrics":{"views":{"count":200},"downloads":{"count":471}}},"fileId":"915124"}]