http://lod.bco-dmo.org/id/dataset/907464 eng; USA utf8 dataset Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact 2023-08-30 ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) Differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments - Experiment 1 2023-09-06 publication 2023-09-06 revision Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA) 2024-04-09 publication https://doi.org/10.26008/1912/bco-dmo.907464.1 Darren Johnson California State University Long Beach principalInvestigator Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. publisher Cite this dataset as: Johnson, D. (2024) Differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments - Experiment 1. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-09-06 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.907464.1 [access date] Specific Dynamic Action of larval grunion - Experiment 1 Dataset Description: Methods and Sampling: &lt;p&gt;To measure oxygen consumption, individual larvae were placed within chambers of a closed microplate reader system that uses optical fluorescence to measure oxygen concentration (PreSens, Germany). After a 5-minute acclimation period, the change in dissolved oxygen was measured every 30 seconds over 20 minutess. The microplate reader had 2 blocks of 24 wells.&lt;/p&gt; &lt;p&gt;In Experiment 1, 20 fish larvae were measured per run. In Experiment 2 (see Related Datasets), 40 fish were measured per run. For all chambers, the investigators ran a linear regression of oxygen concentration on time (n = 40 measurements). The respiration rate for each fish (VO2, expressed in milligrams of O2 per individual per hour (mg O2 ind-1 h-1)) was calculated as:&lt;/p&gt; &lt;p&gt;VO2 = V (S – B)&lt;/p&gt; &lt;p&gt;where S is the slope describing the change in O2 concentration for individual chambers with the fish,&lt;br /&gt; B is the average slope for the four chambers with no fish (both in units of milligrams O2 per liter per hour (mg O2 L-1 h-1) and inferred to be per individual since each well held only one larvae), and&lt;br /&gt; V is the volume of water in the chamber (1.500 × 10-3 liters (L)).&lt;/p&gt; &lt;p&gt;Note the displacement volume of grunion larvae in this study was &amp;lt;2.5 × 10-6 L and thus negligible in these calculations. Fish were assigned to each chamber at random, and larvae were used once in the respiration measurements and then humanely euthanized.&lt;/p&gt; &lt;p&gt;To describe the duration and magnitude of the Specific Dynamic Action (SDA) response, the investigators first calculated delta.VO2, the difference between the mean rates of oxygen consumption for the pair of fed and non-fed larvae.&lt;/p&gt; &lt;p&gt;These data were summarized by Siegfried and Johnson (2023) and plotted in figures 1, 3, and 5.&lt;/p&gt; Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1948975 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1948975 completed Darren Johnson California State University Long Beach 562-985-4806 1250 Bellflower Blvd Long Beach CA 90840 USA darren.johnson@csulb.edu pointOfContact asNeeded Dataset Version: 1 Unknown time_elapsed deltaVO2 deltaVO2_SE DPH closed microplate reader system theme None, User defined time_elapsed O2 consumption age featureType BCO-DMO Standard Parameters plate reader instrument BCO-DMO Standard Instruments otherRestrictions otherRestrictions Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use. RUI: Evaluating selection via ocean acidification and evolutionary responses of two coastal fishes https://osprey.bco-dmo.org/project/852257 RUI: Evaluating selection via ocean acidification and evolutionary responses of two coastal fishes <p><em>NSF Award Abstract:</em><br /> Ongoing increases in atmospheric carbon dioxide have changed the acidity of the ocean, which could affect growth and survival of marine organisms. For fishes, the projected decreases in ocean pH could cause severe increases in mortality during the larval and juvenile stages. In turn, these effects may lead to major reductions in the numbers and size of adult fish, loss of fishery yields, and a loss of income for people whose livelihoods depend on the sea. However, if species can genetically adapt to become more tolerant of ocean acidification conditions, then evolutionary responses may play a role in the long-term dynamics of populations. This project examines how ocean acidification may alter patterns of natural selection for two species of fish in a set of breeding experiments that test tolerances to low pH of different genetic lineages. These experiments are determining the genetic capacity present in these populations to adapt to future conditions and offset the negative effects of changes in seawater chemistry. Broader impacts of this project include the training of two graduate students and at least nine undergraduates at an institution that is recognized as both a Hispanic Serving Institution and an Asian American, Native American, and Pacific Islander Serving Institution, and is one of the most culturally diverse universities in the world. Additional broader impacts include public outreach activities through local aquaria and regular meetings with local city and beach managers. Presentations focus on long-term population predictions of two fish species that are culturally and economically valuable.</p> <p>The goal of the project is to understand how ocean acidification will affect both offspring survival and maternal fitness. The project combines quantitative genetic studies with laboratory experiments and population modeling to examine tradeoffs between fecundity and offspring survival under present and predicted ocean acidification conditions. Breeding experiments are assessing the natural genetic variance underlying larval traits. The experimental protocol includes testing for parental effects by exposing adult fishes to high-pCO2 seawater during gametogenesis and measuring the survival of offspring experiencing conditions of ocean acidification. The capacity for genetic change in response to changes in ocean carbonate chemistry is being investigated through mathematical models. Quantitative evaluation includes 1) how selection operates as seawater chemistry changes; 2) levels of genetic (co)variation underlying larval traits; 3) whether non-genetic inheritance may affect responses to ocean acidification; and 4) whether evolutionary changes are fast enough to affect the dynamics of populations over relevant timeframes (e.g., 10-100 years). The project is developing a genetic model for describing how changes in ocean chemistry are driving natural selection.</p> <p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p> OA and natural selection largerWorkCitation project eng; USA oceans 2021-05-25 2021-06-07 Southern California coastal waters near Seal Beach and Long Beach 0 BCO-DMO catalogue of parameters from Differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments - Experiment 1 Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact http://lod.bco-dmo.org/id/dataset-parameter/907814.rdf Name: time_elapsed Units: hours Description: <p>Time after feeding, in hours</p> http://lod.bco-dmo.org/id/dataset-parameter/907815.rdf Name: deltaVO2 Units: milligrams O2 per liter per hour Description: <p>difference in average oxygen consumption rates between fed and unfed larvae</p> http://lod.bco-dmo.org/id/dataset-parameter/907816.rdf Name: deltaVO2_SE Units: milligrams O2 per liter per hour Description: <p>Standard error of the difference in average oxygen consumption rates between fed and unfed larvae</p> http://lod.bco-dmo.org/id/dataset-parameter/907817.rdf Name: DPH Units: days Description: <p>Age in days post hatching</p> GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact 1027 https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/a33362c8-f6d5-4373-ad70-f68b9f9c0c55/content download https://doi.org/10.26008/1912/bco-dmo.907464.1 download onLine dataset &lt;p&gt;To measure oxygen consumption, individual larvae were placed within chambers of a closed microplate reader system that uses optical fluorescence to measure oxygen concentration (PreSens, Germany). After a 5-minute acclimation period, the change in dissolved oxygen was measured every 30 seconds over 20 minutess. The microplate reader had 2 blocks of 24 wells.&lt;/p&gt; &lt;p&gt;In Experiment 1, 20 fish larvae were measured per run. In Experiment 2 (see Related Datasets), 40 fish were measured per run. For all chambers, the investigators ran a linear regression of oxygen concentration on time (n = 40 measurements). The respiration rate for each fish (VO2, expressed in milligrams of O2 per individual per hour (mg O2 ind-1 h-1)) was calculated as:&lt;/p&gt; &lt;p&gt;VO2 = V (S – B)&lt;/p&gt; &lt;p&gt;where S is the slope describing the change in O2 concentration for individual chambers with the fish,&lt;br /&gt; B is the average slope for the four chambers with no fish (both in units of milligrams O2 per liter per hour (mg O2 L-1 h-1) and inferred to be per individual since each well held only one larvae), and&lt;br /&gt; V is the volume of water in the chamber (1.500 × 10-3 liters (L)).&lt;/p&gt; &lt;p&gt;Note the displacement volume of grunion larvae in this study was &amp;lt;2.5 × 10-6 L and thus negligible in these calculations. Fish were assigned to each chamber at random, and larvae were used once in the respiration measurements and then humanely euthanized.&lt;/p&gt; &lt;p&gt;To describe the duration and magnitude of the Specific Dynamic Action (SDA) response, the investigators first calculated delta.VO2, the difference between the mean rates of oxygen consumption for the pair of fed and non-fed larvae.&lt;/p&gt; &lt;p&gt;These data were summarized by Siegfried and Johnson (2023) and plotted in figures 1, 3, and 5.&lt;/p&gt; Specified by the Principal Investigator(s) &lt;p&gt;For all chambers, the investigators ran a linear regression of oxygen concentration on time to obtain the respiration rate of each fish. Respiration rates, referred to as VO2, were expressed in mg O2 ind-1 h-1. Average VO2 values were then calculated for groups of fed and non-fed larvae of the same age and average size, and experiencing the same seawater conditions. The difference in average VO2 values (referred to as delta VO2) provides a measure of the average energetic cost of digestion at a single time post feeding.&lt;/p&gt; Specified by the Principal Investigator(s) - Imported original data file &quot;Expt 1 summaries.xlsx&quot; into the BCO-DMO system. - Renamed fields to comply with BCO-DMO naming conventions. - Saved the final file as &quot;907464_v1_sda_expt1.csv&quot;. Specified by BCO-DMO Data Managers asNeeded 7.x-1.1 Biological and Chemical Oceanography Data Management Office (BCO-DMO) Unavailable 508-289-2009 WHOI MS#36 Woods Hole MA 02543 USA info@bco-dmo.org http://www.bco-dmo.org Monday - Friday 8:00am - 5:00pm For questions regarding this resource, please contact BCO-DMO via the email address provided. pointOfContact closed microplate reader system closed microplate reader system PI Supplied Instrument Name: closed microplate reader system PI Supplied Instrument Description:Oxygen consumption was measured within a closed microplate reader system that uses optical fluorescence to measure oxygen concentration (Loligo Systems, Denmark and PreSens, Germany). Instrument Name: plate reader Instrument Short Name: Instrument Description: Plate readers (also known as microplate readers) are laboratory instruments designed to detect biological, chemical or physical events of samples in microtiter plates. They are widely used in research, drug discovery, bioassay validation, quality control and manufacturing processes in the pharmaceutical and biotechnological industry and academic organizations. Sample reactions can be assayed in 6-1536 well format microtiter plates. The most common microplate format used in academic research laboratories or clinical diagnostic laboratories is 96-well (8 by 12 matrix) with a typical reaction volume between 100 and 200 uL per well. Higher density microplates (384- or 1536-well microplates) are typically used for screening applications, when throughput (number of samples per day processed) and assay cost per sample become critical parameters, with a typical assay volume between 5 and 50 µL per well. Common detection modes for microplate assays are absorbance, fluorescence intensity, luminescence, time-resolved fluorescence, and fluorescence polarization. From: http://en.wikipedia.org/wiki/Plate_reader, 2014-09-0-23.