http://lod.bco-dmo.org/id/dataset/917690
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2023-12-28
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Thalassia testudinum seagrass weights from biomass cores collected across the Western Atlantic from March to May 2023
2023-12-28
publication
2023-12-28
revision
BCO-DMO Linked Data URI
2023-12-28
creation
http://lod.bco-dmo.org/id/dataset/917690
Justin Campbell
Smithsonian Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Campbell, J. (2023) Thalassia testudinum seagrass weights from biomass cores collected across the Western Atlantic from March to May 2023. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-12-28 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/917690 [access date]
Thalassia testudinum seagrass weights from biomass cores collected across the Western Atlantic Dataset Description: Methods and Sampling: <p>50 small seagrass (all comprised of one species,&nbsp;<em>Thalassia testudinum</em>) plots (0.25m2) were established at 13 shallow sites in the Western Atlantic. Each plot was assigned to one of ten treatments comprising a factorial manipulation of caging, nutrient supply, and canopy clipping: (1) control (2) partial cage (3) full cage (4) added nutrients (5) added nutrients + partial cage (6) added nutrients + full cage (7) full cage + half canopy clip (8) full cage + full canopy clip (9) full cage + added nutrients + half canopy clip (10) full cage + added nutrients + full canopy clip.&nbsp;After the experiment (approx. 1 year) 15cm diameter biomass cores were taken in each plot. To do this, the core was carefully placed over the seagrass and lowered to the sediment surface. The core was then inserted into the sediment (approx 10cm) using a twisting motion to sever belowground rhizomes. The core was then carefully removed and all captured above and belowground vegetative biomass was placed into a mesh bag and gently rinsed underwater. In the lab, the aboveground green leaf material was separated from the belowground material using a razor blade. Leaf material was also scraped clean of any epiphyte loading. Above and belowground material was dried separately in aluminum tares in a 60C oven. Any additional macroalgae found inside the core was also separately dried.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1737247 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1737247
onGoing
Justin Campbell
Smithsonian Institution
305-348-2201
3000 NE 151st Street MSB 350
North Miami
FL
33181
USA
jcampbel@fiu.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
site
latitude
longitude
recorder
season
date_collected
plot
clipping
nutrients
cage
greenleaf_drywt
sheath_drywt
root_drywt
rhizome_drywt
root_rhizome_drywt
otherveg_identification
otherveg1_spp
otherveg1_drywt
otherveg2_spp
otherveg2_drywt
otherveg3_spp
otherveg3_drywt
otherveg4_spp
otherveg4_drywt
otherveg5_spp
otherveg5_drywt
Custom made stainless steel push corer
Analytical balance
theme
None, User defined
site
latitude
longitude
recorder
season
date
Site_ID
treatment
dry_weight_biomass
taxon
species scientific name (binomial)
featureType
BCO-DMO Standard Parameters
Push Corer
scale or balance
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: The tropicalization of Western Atlantic seagrass beds
https://marinegeo.si.edu/research/research-in-action/underwater-meadows-and-resilient-seas
Collaborative Research: The tropicalization of Western Atlantic seagrass beds
<p><em>NSF Award Abstract:</em><br />
The warming of temperate marine communities is becoming a global phenomenon, producing new biotic interactions that can result in a series of cascading effects on ecosystem structure. For example, the poleward expansion of herbivore populations can lead to the consumption of habitat-forming vegetation, which alters the ecological services provided by coastal environments (a phenomenon known as tropicalization). Many of the habitats at risk, such as kelp forest and seagrass beds, provide foundational habitat that supports complex food webs. Seagrass meadows along the Gulf of Mexico are currently experiencing an influx of tropical grazers, however a integrated understanding of how these communities might ultimately respond is lacking. This project describes the first experiment to quantify the disruptive effect of tropicalization on the ecology of a widely-distributed seagrass. A major contribution of this project will be the development of a seagrass research collaborative network to serve as a platform for broader scientific inquiry and future collaboration. The collaboration spans a total of 11 institutions, and this network will foster extensive collaborations among junior and senior scientists, as well as many undergraduate and graduate students. Given the geographic scope of this work, the research team will further pursue outreach opportunities across the network by hosting a series of public lectures and science café events promoting topics in marine ecology and conservation.</p>
<p>This study will develop a large-scale manipulative experiment across the Caribbean, premised upon a comparative network of 15 marine sites, which will quantify how temperature and light interact with grazer effects on the dominant tropical seagrass, Thalassia testudinum. Sites have been selected along a latitudinal gradient (from Bermuda to Panama), such that light and temperature vary, allowing the investigators to test for the effects of abiotic factors on the ecological effects of increased grazing (tropicalization simulated via artificial leaf clipping). At each of the 15 marine sites, grazing treatments will be crossed with nutrient manipulations in a factorial design for 18 weeks, after which seagrass structure and functioning will be assessed via measurements of areal productivity, shoot density, aboveground biomass, and carbohydrate storage. Experiments will be conducted both in the summer and winter seasons, when abiotic gradients are at their weakest and strongest, respectively. Emerging statistical techniques in hierarchical mixed modeling and structural equation modeling will further allow for integration of experimental and observational data.</p>
Tropicalization Seagrass Beds
largerWorkCitation
project
eng; USA
oceans
-97.034722222222
-64.830555555556
9.351388888889
32.263611111111
2019-03-01
2019-05-23
Western Atlantic
0
BCO-DMO catalogue of parameters from Thalassia testudinum seagrass weights from biomass cores collected across the Western Atlantic from March to May 2023
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/1007337.rdf
Name: site
Units: unitless
Description: <p>Site name / location</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007338.rdf
Name: latitude
Units: decimal degrees
Description: <p>Latitude in decimal degrees</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007340.rdf
Name: longitude
Units: decimal degrees
Description: <p>Longitude in decimal degrees</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007342.rdf
Name: recorder
Units: unitless
Description: <p>recorder</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007343.rdf
Name: season
Units: unitless
Description: <p>summer (Apr-Oct) ; winter (Oct-Apr)</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007344.rdf
Name: date_collected
Units: unitless
Description: <p>mm/dd/yyyy</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007345.rdf
Name: plot
Units: unitless
Description: <p>plot number (1-50)</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007346.rdf
Name: clipping
Units: unitless
Description: <p>level of clipping; no=no clipping; partial=half canopy removed; full=full canopy removed</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007347.rdf
Name: nutrients
Units: unitless
Description: <p>level of nutrients; ambient=no added nutrients; enriched=added nutrients</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007348.rdf
Name: cage
Units: unitless
Description: <p>level of cage; no=no cage; partial=partial 4-sided cage; full=full cage</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007349.rdf
Name: greenleaf_drywt
Units: grams (g)
Description: <p>above ground green leaf biomass</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007350.rdf
Name: sheath_drywt
Units: grams (g)
Description: <p>below ground sheath biomass</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007351.rdf
Name: root_drywt
Units: grams (g)
Description: <p>below ground root biomass</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007352.rdf
Name: rhizome_drywt
Units: grams (g)
Description: <p>below ground rhizome biomass</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007353.rdf
Name: root_rhizome_drywt
Units: grams (g)
Description: <p>belowground rhizome + root biomass</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007354.rdf
Name: otherveg_identification
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007355.rdf
Name: otherveg1_spp
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007356.rdf
Name: otherveg1_drywt
Units: grams (g)
Description: <p>additional macroalgae dry wt</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007357.rdf
Name: otherveg2_spp
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007358.rdf
Name: otherveg2_drywt
Units: grams (g)
Description: <p>additional macroalgae dry wt</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007359.rdf
Name: otherveg3_spp
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007360.rdf
Name: otherveg3_drywt
Units: grams (g)
Description: <p>additional macroalgae dry wt</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007361.rdf
Name: otherveg4_spp
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007362.rdf
Name: otherveg4_drywt
Units: grams (g)
Description: <p>additional macroalgae dry wt</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007363.rdf
Name: otherveg5_spp
Units: unitless
Description: <p>additional macroalgae taxa</p>
http://lod.bco-dmo.org/id/dataset-parameter/1007364.rdf
Name: otherveg5_drywt
Units: grams (g)
Description: <p>additional macroalgae dry wt</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
123184
https://datadocs.bco-dmo.org/file/3YZEJp7IX4RQWK/917690_v1_TEN_seagrass_biomass_weights.csv
917690_v1_TEN_seagrass_biomass_weights.csv
Primary data file for dataset ID 917690, version 1
download
https://osprey.bco-dmo.org/dataset/917690/data/download
download
onLine
dataset
<p>50 small seagrass (all comprised of one species,&nbsp;<em>Thalassia testudinum</em>) plots (0.25m2) were established at 13 shallow sites in the Western Atlantic. Each plot was assigned to one of ten treatments comprising a factorial manipulation of caging, nutrient supply, and canopy clipping: (1) control (2) partial cage (3) full cage (4) added nutrients (5) added nutrients + partial cage (6) added nutrients + full cage (7) full cage + half canopy clip (8) full cage + full canopy clip (9) full cage + added nutrients + half canopy clip (10) full cage + added nutrients + full canopy clip.&nbsp;After the experiment (approx. 1 year) 15cm diameter biomass cores were taken in each plot. To do this, the core was carefully placed over the seagrass and lowered to the sediment surface. The core was then inserted into the sediment (approx 10cm) using a twisting motion to sever belowground rhizomes. The core was then carefully removed and all captured above and belowground vegetative biomass was placed into a mesh bag and gently rinsed underwater. In the lab, the aboveground green leaf material was separated from the belowground material using a razor blade. Leaf material was also scraped clean of any epiphyte loading. Above and belowground material was dried separately in aluminum tares in a 60C oven. Any additional macroalgae found inside the core was also separately dried.</p>
Specified by the Principal Investigator(s)
Curation Actions Performed on Data
- Loaded biom_weight_data.xlsx and treated blank cells, "nd", and "NA" as missing values.
- Converted latitude and longitude from degrees–minutes–seconds to decimal degrees. Latitude was recorded as north and longitude as west.
- Converted date_collected from %m-%d-%y to the date format %Y-%m-%d.
- Removed units from dry-weight column names, such as changing greenleaf_drywt (g) to greenleaf_drywt.
- Set the appropriate data type for each column, including text, dates, numbers, and integers.
- Added descriptions, standard-name IDs, and units to the column metadata.
- Marked latitude and longitude as the primary location parameters.
- Saved the processed data file as 917690_v1_TEN_seagrass_biomass_weights.csv.
Curation Actions Performed on Metadata
- Standard FAIR metadata curation principles have been applied to the metadata associated with this dataset where possible.
Known Issues [Potentially Impacting Reuse]
- Data file and metadata as presented have not been validated by the dataset author.
- Supporting citations for papers associated with the methods used for the generation of this data have not been provided.
- Three "Halodule" text values exist in the otherwise numeric otherveg1_drywt column of the primary data file; their intended meaning and proper placement or treatment have not been confirmed by the submitter, which may affect interpretation and reuse of these data.
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Custom made stainless steel push corer
Custom made stainless steel push corer
PI Supplied Instrument Name: Custom made stainless steel push corer PI Supplied Instrument Description:A custom made stainless steel push corer (15cm diameter) was used to collect the seagrass biomass samples. Instrument Name: Push Corer Instrument Short Name: Instrument Description: Capable of being performed in numerous environments, push coring is just as it sounds. Push coring is simply pushing the core barrel (often an aluminum or polycarbonate tube) into the sediment by hand. A push core is useful in that it causes very little disturbance to the more delicate upper layers of a sub-aqueous sediment.
Description obtained from: http://web.whoi.edu/coastal-group/about/how-we-work/field-methods/coring/
Analytical balance
Analytical balance
PI Supplied Instrument Name: Analytical balance PI Supplied Instrument Description:All samples were weighed on an analytical balance (resolution - 0.001 g). Instrument Name: scale or balance Instrument Short Name: Instrument Description: Devices that determine the mass or weight of a sample. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB13/