Continuous rates of net community production and the O2/Ar data on the US Northeastern Shelf in the SPIROPA project during spring and summer 2018 and 2019.

Website: https://www.bco-dmo.org/dataset/942699
Data Type: Other Field Results
Version: 1
Version Date: 2025-10-10

Project
» Collaborative Research: Shelfbreak Frontal Dynamics: Mechanisms of Upwelling, Net Community Production, and Ecological Implications (SPIROPA)
ContributorsAffiliationRole
Stanley, Rachel H. R.Wellesley CollegePrincipal Investigator, Contact
Sandwith, Zoe O.Woods Hole Oceanographic Institution (WHOI)Technician
Soenen, KarenWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
An at-sea equilibrator inlet mass spectrometer was used onboard three cruises in 2018 and 2019 in the Northeastern US Shelf as part of the SPIROPA project in order to measure ratios of O2/Ar in the underway water. The gas ratios were used to calculate rates of net community production at kilometer scale resolution. This dataset thus contains the gas ratios as well as the calculated rates. The data was collected on the R/V Armstrong from 4/16/18 to 4/29/18, on the NOAA ship Ron Brown from 5/12/2019 to 5/25/2019 and on the R/V Thompson from 7/5/2019 to 7/17/2019. This high spatial resolution data enables us to see submesoscale variability in rates of net community production and to assess whether changes in rates of NCP are co-located with physical processes. This dataset also contains necessary metadata such as location and time as well as useful data from shipboard CTD sensors such as temperature and salinity. Gas transfer rates are required to calculate rates of NCP from gas tracer data. The data includes the gas transfer rates that were used in the calculations, which were determined from NCEP reanalysis winds, a 60 day weighting scheme, and the gas exchange parameterization of Stanley et al., 2009. NCP was calculated based on mass balance with typical assumptions of steady state and negligible vertical and horizontal mixing.  Details on how NCP rates were calculated from the O2/Ar data are available in Stanley et al. (in press at L&O) and Castillo Cieza et al (2024). 


Coverage

Location: Northeastern US Shelf, Mid-Atlantic Bight, primarily along longitude 70.83 °W, from latitude 39.6 to 40.5 °N, in water depths ranging from 40 m to 1700 m
Spatial Extent: N:41.5163 E:-69.9495 S:38.9437 W:-71.5705
Temporal Extent: 2018-04-16 - 2019-07-18

Methods & Sampling

Water from the underway was pumped into an equilibration cartridge (Liqui-Cel Extra-Flow 2.5x8 model G540). The gas stream was dried with the desiccants Nafion and Drierite and then transferred to a Hiden Quadrupole mass spectrometer via a deactivated fused silica capillary where ion currents of O2 and Ar, were measured. The system was calibrated by measuring the O2/Ar ratio in air for approximately 20 minutes every 6 hours and also by measurements of O2/Ar in samples collected into custom-made 300-mL glass bottles and analyzed post-cruise at a shore-based lab using an isotope ratio mass spectrometer. For details on the methods and analysis, see Castillo Cieza et al. (2024). The gas content in the underway water was confirmed to be statistically the same as that in the CTD surface Niskins by repeatedly comparing water from those sources during each cruise.


Data Processing Description

NCP was calculated from the O2/Ar ratios by assuming steady state, neglecting horizontal and vertical advection, and therefore using :NCP = ((O2/Ar)smpl/(O2/Ar)eq-1)*[O2]eq*k*ρ 

where (O2/Ar)smpl represents the ratio of O2 to Ar ion currents detected by the EIMS after being calibrated with bottle data, and (O2/Ar)eq represents the ratio of equilibrium concentrations of the gases determined from the gases’ solubility (Garcia and Gordon 1992; Hamme and Emerson 2004) at the seawater temperature and salinity, [O2]eq represents the equilibrium concentration of O2 at the relevant temperature and salinity (mmol kg-1), k is the weighted gas transfer velocity (m d-1), and ρ is the density of seawater (kg m-3) (Millero and Poisson 1981). The weighted gas transfer velocity is a time-weighted average from over the past 60 d calculated as described in Reuer et al. (2007), with the gas exchange parameterization of Stanley et al. (2009) and wind speeds from NCEP Reanalysis (Kalnay et al., 1996; Kistler et al., 2001).


BCO-DMO Processing Description

* merged files from different cruises into 1
* adjusted parameter names to comply with database requirements
* convert date/time to ISO format


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Data Files

File
942699_v1_ncp.csv
(Comma Separated Values (.csv), 10.59 MB)
MD5:801161f577b21f74724275f5ace04ffd
Primary data file for dataset ID 942699, version 1

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Related Publications

Castillo Cieza, S. A., Stanley, R. H. R., Marrec, P., Fontaine, D. N., Crockford, E. T., McGillicuddy Jr., D. J., Mehta, A., Menden-Deuer, S., Peacock, E. E., Rynearson, T. A., Sandwith, Z. O., Zhang, W., & Sosik, H. M. (2024). Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters. Biogeosciences, 21(5), 1235–1257. https://doi.org/10.5194/bg-21-1235-2024
Methods
Garcia, H. E., & Gordon, L. I. (1992). Oxygen solubility in seawater: Better fitting equations. Limnology and Oceanography, 37(6), 1307–1312. Portico. https://doi.org/10.4319/lo.1992.37.6.1307 https://doi.org/10.4319%2Flo.1992.37.6.1307
Methods
Hamme, R. C., & Emerson, S. R. (2004). The solubility of neon, nitrogen and argon in distilled water and seawater. Deep Sea Research Part I: Oceanographic Research Papers, 51(11), 1517–1528. doi:10.1016/j.dsr.2004.06.009
Methods
Kalnay, E., Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L., Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Leetmaa, A., Reynolds, R., Chelliah, M., Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K. C., Ropelewski, C., … Joseph, D. (1996). The NCEP/NCAR 40-Year Reanalysis Project. Bulletin of the American Meteorological Society, 77(3), 437–471. https://doi.org/10.1175/1520-0477(1996)077<0437:tnyrp>2.0.co;2 https://doi.org/10.1175/1520-0477(1996)077<0437:TNYRP>2.0.CO;2
Methods
Kistler, R., Collins, W., Saha, S., White, G., Woollen, J., Kalnay, E., Chelliah, M., Ebisuzaki, W., Kanamitsu, M., Kousky, V., van den Dool, H., Jenne, R., & Fiorino, M. (2001). The NCEP–NCAR 50–Year Reanalysis: Monthly Means CD–ROM and Documentation. Bulletin of the American Meteorological Society, 82(2), 247–267. https://doi.org/10.1175/1520-0477(2001)082<0247:tnnyrm>2.3.co;2 https://doi.org/10.1175/1520-0477(2001)082<0247:TNNYRM>2.3.CO;2
Methods
Millero, F. J., & Poisson, A. (1981). International one-atmosphere equation of state of seawater. Deep Sea Research Part A. Oceanographic Research Papers, 28(6), 625–629. https://doi.org/10.1016/0198-0149(81)90122-9
Methods
Reuer, M. K., Barnett, B. A., Bender, M. L., Falkowski, P. G., & Hendricks, M. B. (2007). New estimates of Southern Ocean biological production rates from O2/Ar ratios and the triple isotope composition of O2. Deep Sea Research Part I: Oceanographic Research Papers, 54(6), 951–974. doi:10.1016/j.dsr.2007.02.007
Methods
Smith, W. O., Zhang, W. G., Hirzel, A., Stanley, R. M., Meyer, M. G., Sosik, H., Alatalo, P., Oliver, H., Sandwith, Z., Crockford, E. T., Peacock, E. E., Mehta, A., & McGillicuddy, D. J. (2021). A Regional, Early Spring Bloom of Phaeocystis pouchetii on the New England Continental Shelf. Journal of Geophysical Research: Oceans, 126(2). Portico. https://doi.org/10.1029/2020jc016856 https://doi.org/10.1029/2020JC016856
Results
Stanley, R. H. R., Z. Kronberg, H. M. Sosik, L. Baldwin, N. O'Hern, K. Cahill, E. T. Crockford, H. Oliver, E. Peacock, Z. O. Sandwith, W. G. Zhang, B. Zheng, and D. J. McGillicuddy, Jr. "Localized and episodic enhancement of net community production and phytoplankton carbon in spring and summer at the Northeastern US shelf-break front". In press in Limnology and Oceanography.
Results
Zhang, W. (Gordon), Alatalo, P., Crockford, T., Hirzel, A. J., Meyer, M. G., Oliver, H., Peacock, E., Petitpas, C. M., Sandwith, Z., Smith, W. O., Sosik, H. M., Stanley, R. H. R., Stevens, B. L. F., Turner, J. T., & McGillicuddy, D. J. (2023). Cross-shelf exchange associated with a shelf-water streamer at the Mid-Atlantic Bight shelf edge. Progress in Oceanography, 210, 102931. https://doi.org/10.1016/j.pocean.2022.102931
Results

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Related Datasets

IsRelatedTo
Stanley, R. H. R., Sandwith, Z. O. (2025) Discrete Net Community and Gross Primary Production Rates data on the US Northeastern Shelf in the SPIROPA project during spring and summer 2018 and 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-10-03 doi:10.26008/1912/bco-dmo.985985.1 [view at BCO-DMO]
Relationship Description: Discrete rates.

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Parameters

ParameterDescriptionUnits
Cruise

Cruise ID: AR29, RB1904 or TN368

unitless
Date

Sampling date and time (UTC)

unitless
O2_Ar_corrected

Ratio of O2/Ar - has been corrected using air, only the water data is shown

unitless
Temperature

Temperature

degrees Celsius (°C)
Salinity

Salinity

PSU
Latitude

Sampling latitude, south is negative

decimal degrees
Longitude

Sampling longitude, west is negative

decimal degrees
Cum_Distance

Distance (in km) from the first data point though when the ship backtracks it adds still so is not the physical distance between beginning of cruise but rather reflects the distance traveled

Kilometer (km)
biosat

Defined as the ((O2/Ar)smple / (O2/Ar)eq -1)*100. positive values reflect net photosynthesis. negative values reflect net respiration. it represents the % change in O2 saturation due to biological production (since Ar cancels out the physical effects)

percentage (%)
NCP

Net community production. In units of mmol O2 /m2/day integrated throughout the mixed layer. NCP = photosynthesis minus autotrophic and heterotrophic respiration

mmol O2 /m2/day
gas_transfer_velocity

Required for calculating NCP from the biological O2 saturation and was determined using NCEP reanalysis winds, the weighting scheme of Reuer et al, 2006. and the gas exchange parameterization of stanley et al 2009. If people want other gas transfer velocities, they can calculate them as desired and use with the oxygen biological saturation to calculate NCP. 

k (m/d)


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Instruments

Dataset-specific Instrument Name
Hiden Analytical HAL-3F
Generic Instrument Name
Quadrupole Mass Spectrometer
Dataset-specific Description
Hiden Quadrupole mass spectrometer HAL-3F  for O2/Ar ratios
Generic Instrument Description
A piece of apparatus that consists of an ion source, a mass-to-charge analyser, a detector and a vacuum system and is used to measure mass spectra. The detector is a quadrupole mass-to-charge analyser, which holds the ions in a stable orbit by an electric field generated by four parallel electrodes.  

Dataset-specific Instrument Name
Generic Instrument Name
Sea-Bird SBE 45 MicroTSG Thermosalinograph
Dataset-specific Description
Ship's Seabird SBE45 sensors and averaged to 60-second intervals for temperature and salinity
Generic Instrument Description
A small externally powered, high-accuracy instrument, designed for shipboard determination of sea surface (pumped-water) conductivity and temperature. It is constructed of plastic and titanium to ensure long life with minimum maintenance. It may optionally be interfaced to an external SBE 38 hull temperature sensor. Sea Bird SBE 45 MicroTSG (Thermosalinograph)


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Deployments

AR29

Website
Platform
R/V Neil Armstrong
Start Date
2018-04-16
End Date
2018-04-29

RB1904

Website
Platform
NOAA Ship Ronald H. Brown
Start Date
2019-05-12
End Date
2019-05-25

TN368

Website
Platform
R/V Thomas G. Thompson
Start Date
2019-07-05
End Date
2019-07-18
Description


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Project Information

Collaborative Research: Shelfbreak Frontal Dynamics: Mechanisms of Upwelling, Net Community Production, and Ecological Implications (SPIROPA)


Coverage: Shelf break south of New England, OOI Pioneer Array


NSF award abstract:

The continental shelf break of the Middle Atlantic Bight supports a productive and diverse ecosystem. Current paradigms suggest that this productivity is driven by several upwelling mechanisms at the shelf break front. This upwelling supplies nutrients that stimulate primary production by phytoplankton, which in turn leads to enhanced production at higher trophic levels. Although local enhancement of phytoplankton biomass has been observed in some circumstances, such a feature is curiously absent from time-averaged measurements, both from satellites and shipboard sampling. Why would there not be a mean enhancement in phytoplankton biomass as a result of the upwelling? One hypothesis is that grazing by zooplankton prevents accumulation of biomass on seasonal and longer time scales, transferring the excess production to higher trophic levels and thereby contributing to the overall productivity of the ecosystem. However, another possibility is that the net impact of these highly intermittent processes is not adequately represented in long-term means of the observations, because of the relatively low resolution of the in-water measurements and the fact that the frontal enhancement can take place below the depth observable by satellite. The deployment of the Ocean Observatories Initiative (OOI) Pioneer Array south of New England has provided a unique opportunity to test these hypotheses. The combination of moored instrumentation and autonomous underwater vehicles will facilitate observations of the frontal system with unprecedented spatial and temporal resolution. This will provide an ideal four-dimensional (space-time) context in which to conduct a detailed study of frontal dynamics and plankton communities needed to examine mechanisms controlling phytoplankton populations in this frontal system. This project will also: (1) promote teaching, training and learning via participation of graduate and undergraduate students in the research , (2) provide a broad dissemination of information by means of outreach in public forums, printed media, and a video documentary of the field work, and (3) contribute to improving societal well-being and increased economic competitiveness by providing the knowledge needed for science-based stewardship of coastal ecosystems, with particular emphasis on connecting with the fishing industry through the Commercial Fisheries Research Foundation.

The investigators will conduct a set of three cruises to obtain cross-shelf sections of physical, chemical, and biological properties within the Pioneer Array. Nutrient distributions will be assayed together with hydrography to detect the signature of frontal upwelling and associated nutrient supply. The investigators expect that enhanced nutrient supply will lead to changes in the phytoplankton assemblage, which will be quantified with conventional flow cytometry, imaging flow cytometry (Imaging FlowCytobot, IFCB), optical imaging (Video Plankton Recorder, VPR), traditional microscopic methods, and pigment analysis. Zooplankton will be measured in size classes ranging from micro- to mesozooplankton with the IFCB and VPR, respectively, and also with microscopic analysis. Biological responses to upwelling will be assessed by measuring rates of primary productivity, zooplankton grazing, and net community production. These observations will be synthesized in the context of a coupled physical-biological model to test the two hypotheses that can potentially explain prior observations: (1) grazer-mediated control and (2) undersampling. Hindcast simulations will also be used to diagnose the relative importance of the various mechanisms of upwelling. The intellectual merit of this effort stems from our interdisciplinary approach, advanced observational techniques, and integrated analysis in the context of a state-of-the-art coupled model. The project will address longstanding questions regarding hydrodynamics and productivity of an important ecosystem, leading to improved understanding of physical-biological interactions in a complex continental shelf regime. Given the importance of frontal systems in the global coastal ocean, it is expected that knowledge gained will have broad applicability beyond the specific region being studied.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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