http://lod.bco-dmo.org/id/dataset/949897
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2025-01-29
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Winter temperature data from loggers placed in shallow subtidal areas in the northeast Pacific from Oct 2019 to Jul 2024
2025-01-31
publication
2025-01-31
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2025-03-19
publication
https://doi.org/10.26008/1912/bco-dmo.949897.1
Adrianne Akmajian
Makah Tribe
principalInvestigator
Emily Grason
Washington Sea Grant
principalInvestigator
P. Sean McDonald
University of Washington
principalInvestigator
Carolyn Tepolt
Woods Hole Oceanographic Institution
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Tepolt, C., McDonald, P. S., Grason, E., Akmajian, A. (2025) Winter temperature data from loggers placed in shallow subtidal areas in the northeast Pacific from Oct 2019 to Jul 2024. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-01-31 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.949897.1 [access date]
Winter temperature data from northeast Pacific embayments Dataset Description: Methods and Sampling: <p>Loggers were placed in the shallow subtidal in areas determined by Washington&nbsp;Sea Grant's Crab Team to be good environment for green crabs. Loggers were placed by multiple collaborators without a fully standardized approach; metadata are incomplete but include all available information. Loggers used were iButtons (Maxim Integrated; models DS1921G, DS1921Z, or DS1921G-F5) in 2019-2023, switching to HOBO loggers (Onset; model MX 2201) in 2022 (Makah Bay) or 2023 (all sites).&nbsp;iButtons were housed in waterproof housing capsules (DS9107), and both types of logger were placed within short lengths of PVC, which were open at both ends, to allow water flow but reduce temperature changes related direct light exposure, and any physical damage. Two loggers were placed at each site in the shallow subtidal, generally anchored on cinderblocks or pieces of PVC pushed into the substrate. Loggers were typically started before they were deployed in the field, sometimes weeks before, so include some air temperature data before deployment; metadata includes actual dates and times of deployment&nbsp; when known. Logging frequency varied by model: iButtons were set to log every 2.15 hours, and HOBOs logged every 30 min over the winter. Duration varied between years and sites, but typically ran from October - April. Loggers were generally not set to roll over (but see notes), and data were retrieved in the spring.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1850996 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1850996
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1850945 Award URL: https://www.nsf.gov/awardsearch/show-award?AWD_ID=1850945
completed
Adrianne Akmajian
Makah Tribe
marine.ecologist@makah.com
pointOfContact
Emily Grason
Washington Sea Grant
egrason@uw.edu
pointOfContact
P. Sean McDonald
University of Washington
2066162186
WA
981955672
US
psean@uw.edu
pointOfContact
Carolyn Tepolt
Woods Hole Oceanographic Institution
5082893542
266 Woods Hole Road
Woods Hole
MA
025431535
US
ctepolt@whoi.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
ISO_DateTime_UTC
Local_DateTime
Temperature
File_Name
SiteNumber
SiteName
HabType
Type
Model
SerialNumber
LoggerStartDate
DeploymentDate
DeploymentTime
DeploymentDateTime
Latitude
Longitude
DeployedBy
RetrievalDate
AnchorType
TimeVar
Notes
HOBO MX2201 loggers (Onset)
Thermochron iButton (Maxim) primarily model DS1921G
theme
None, User defined
ISO_DateTime_UTC
ISO_DateTime_Local
water temperature at measurement depth
file_name
Site_ID
site
site description
instrument
instrument model
inst_serial_numb
date begin
date
time of day
latitude
longitude
responsible_entity
date end
time_elapsed
comments
featureType
BCO-DMO Standard Parameters
Onset HOBO Pendant MX2201 temperature logger
Water Temperature Sensor
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator
https://osprey.bco-dmo.org/project/811534
Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator
<p><em><strong>NSF Award Abstract: </strong></em><br />
Marine invasive species pose a serious and ongoing risk to ocean ecosystems and the economies that rely on them. Understanding how such species adapt rapidly to new environments is key to preventing and managing invasions. Traditionally, the focus has been on inherent traits and flexibility of an invasive species, ignoring the potential for evolutionary change after introduction. However, recent research has shown that some marine species may evolve specific genomic features which allow highly efficient selection over as little as a single generation. This project tests the importance of genomic traits in allowing marine invasive species to survive and thrive on new shores. Its focus is on the high-impact invasive European green crab, which has spread over 1,500 km of the West Coast of North America since 1989 and has very recently begun expanding into the Salish Sea. This project tracks the earliest stages of green crab invasion into a new environment where the species is predicted to have substantial ecological and economic impacts. Genetic differences are followed over time and space across the entire West Coast, with a focus on crabs found in the Salish Sea where the species is currently expanding. Genetic data is complemented by oceanographic modeling to predict the spread of green crabs into the Salish Sea and across the West Coast. Finally, targeted sequencing and prior sampling are used to probe the genomic traits underlying these changes and determine if the same traits have played a role in the species' invasive success on other shores. Sampling for this project is conducted by Washington Sea Grant's Crab Team, an expansive outreach and monitoring program powered largely by hundreds of volunteers who monitor green crabs across 3,000 miles of coastline in the Salish Sea. The results of this project are shared with these volunteers and other stakeholders and is used to inform trans-boundary green crab management and spread prediction on the West Coast.</p>
<p>Recent work has hypothesized that genomic architecture, which has been increasingly discovered to play a role in local adaptation, may also be key to a species' ability to adapt quickly when gene flow is high. This project integrates multiple approaches to track the speed and dynamics of adaptation-with-gene flow across a thermal gradient in an explicit oceanographic context using the invasive European green crab (Carcinus maenas). Prior work in this system identified a suite of genes that appear to constitute balanced polymorphisms whose allele frequencies correlate strongly with site temperature against a homogeneous neutral genetic background. This project has three main goals: 1) To examine fine-scale selection to temperature over a comprehensive spatial and temporal data set comprising most of the species' history on the West Coast, 2) To track the expanding range front in the Salish Sea, comparing the genetic trajectory of individuals at the range edge with oceanographic modeling of dispersal, and 3) To characterize the genomic regions surrounding putative balanced polymorphisms and examine the ubiquity of their association with temperature across globally replicated populations. This coupled evolutionary oceanography approach represents an unprecedented test of the speed and nature of rapid adaptation in a highly dynamic natural marine environment.</p>
<p>This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.</p>
West Coast Carcinus
largerWorkCitation
project
eng; USA
oceans
-124.67496
-122.66786
37.90789
48.9617611
2019-10-01
2024-07-16
North American west coast: 36 N to 51 N. Emphasis on the Salish Sea
0
BCO-DMO catalogue of parameters from Winter temperature data from loggers placed in shallow subtidal areas in the northeast Pacific from Oct 2019 to Jul 2024
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/950075.rdf
Name: ISO_DateTime_UTC
Units: unitless
Description: <p>Datetime (UTC) of measurement in ISO 8601 format</p>
http://lod.bco-dmo.org/id/dataset-parameter/950076.rdf
Name: Local_DateTime
Units: unitless
Description: <p>Datetime (local, Pacific Standard Time) of measurement in ISO 8601 format</p>
http://lod.bco-dmo.org/id/dataset-parameter/950077.rdf
Name: Temperature
Units: degrees Celsius
Description: <p>Water temperature</p>
http://lod.bco-dmo.org/id/dataset-parameter/950078.rdf
Name: File_Name
Units: unitless
Description: <p>Name of associated with original temperature data file</p>
http://lod.bco-dmo.org/id/dataset-parameter/950079.rdf
Name: SiteNumber
Units: unitless
Description: <p>WA Sea Grant code for site</p>
http://lod.bco-dmo.org/id/dataset-parameter/950080.rdf
Name: SiteName
Units: unitless
Description: <p>Site name</p>
http://lod.bco-dmo.org/id/dataset-parameter/950081.rdf
Name: HabType
Units: unitless
Description: <p>Habitat type</p>
http://lod.bco-dmo.org/id/dataset-parameter/950082.rdf
Name: Type
Units: unitless
Description: <p>Logger Brand</p>
http://lod.bco-dmo.org/id/dataset-parameter/950083.rdf
Name: Model
Units: unitless
Description: <p>Logger model number</p>
http://lod.bco-dmo.org/id/dataset-parameter/950084.rdf
Name: SerialNumber
Units: unitless
Description: <p>Individual logger serial number</p>
http://lod.bco-dmo.org/id/dataset-parameter/950085.rdf
Name: LoggerStartDate
Units: unitless
Description: <p>Date logger was started (local, Pacific Standard Time)</p>
http://lod.bco-dmo.org/id/dataset-parameter/950086.rdf
Name: DeploymentDate
Units: unitless
Description: <p>Date logger was deployed in the field (local, Pacific Standard Time)</p>
http://lod.bco-dmo.org/id/dataset-parameter/950087.rdf
Name: DeploymentTime
Units: unitless
Description: <p>Local Time logger was deployed in the field (local, Pacific Standard Time)</p>
http://lod.bco-dmo.org/id/dataset-parameter/950088.rdf
Name: DeploymentDateTime
Units: unitless
Description: <p>Local Datetime (local, Pacific Standard Time) logger was deployed in the field</p>
http://lod.bco-dmo.org/id/dataset-parameter/950089.rdf
Name: Latitude
Units: decimal degrees
Description: <p>Latitude (decimal degrees), North is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/950090.rdf
Name: Longitude
Units: decimal degrees
Description: <p>Longitude (decimal degrees), East is positive</p>
http://lod.bco-dmo.org/id/dataset-parameter/950091.rdf
Name: DeployedBy
Units: unitless
Description: <p>Person who deployed / retrieved the logger</p>
http://lod.bco-dmo.org/id/dataset-parameter/950092.rdf
Name: RetrievalDate
Units: unitless
Description: <p>Date logger was retrieved (local, Pacific Standard Time)</p>
http://lod.bco-dmo.org/id/dataset-parameter/950093.rdf
Name: AnchorType
Units: unitless
Description: <p>How logger was held in place in the shallow subtidal</p>
http://lod.bco-dmo.org/id/dataset-parameter/950094.rdf
Name: TimeVar
Units: seconds
Description: <p>Offset between logged time and actual time (measured at retrieval)</p>
http://lod.bco-dmo.org/id/dataset-parameter/950095.rdf
Name: Notes
Units: unitless
Description: <p>Any additional information on loggers or records</p>
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
44969616
https://darchive.mblwhoilibrary.org/server/api/core/bitstreams/9cd2ff63-74b6-45ab-b199-e6ae6120ab26/content
download
https://doi.org/10.26008/1912/bco-dmo.949897.1
download
onLine
dataset
<p>Loggers were placed in the shallow subtidal in areas determined by Washington&nbsp;Sea Grant's Crab Team to be good environment for green crabs. Loggers were placed by multiple collaborators without a fully standardized approach; metadata are incomplete but include all available information. Loggers used were iButtons (Maxim Integrated; models DS1921G, DS1921Z, or DS1921G-F5) in 2019-2023, switching to HOBO loggers (Onset; model MX 2201) in 2022 (Makah Bay) or 2023 (all sites).&nbsp;iButtons were housed in waterproof housing capsules (DS9107), and both types of logger were placed within short lengths of PVC, which were open at both ends, to allow water flow but reduce temperature changes related direct light exposure, and any physical damage. Two loggers were placed at each site in the shallow subtidal, generally anchored on cinderblocks or pieces of PVC pushed into the substrate. Loggers were typically started before they were deployed in the field, sometimes weeks before, so include some air temperature data before deployment; metadata includes actual dates and times of deployment&nbsp; when known. Logging frequency varied by model: iButtons were set to log every 2.15 hours, and HOBOs logged every 30 min over the winter. Duration varied between years and sites, but typically ran from October - April. Loggers were generally not set to roll over (but see notes), and data were retrieved in the spring.</p>
Specified by the Principal Investigator(s)
<p><!--StartFragment-->The raw .csv files were exported from OneWireViewer (iButtons) or HOBOware (HOBO pendant loggers) logger reading software. Files were not cleaned or trimmed, except as noted. A spreadsheet with all available metadata for deployments and retrievals was created.<!--EndFragment--></p>
Specified by the Principal Investigator(s)
- Imported "BCO-DMO_temp-logger_metadata_NSF-1850996.csv" into BCO-DMO system
- Converted all dates to YYYY-MM-DD ISO 8601 format
- Replaced the following filenames with the corresponding filenames as they were submitted:
367.23-24.WinterB → 367.23.24.WinterB.csv
384.23-24.Winter.B → 384.23.24.WinterB.csv
385.23-24.WinterB → 385.23.24.WinterB.csv
367.23-24.Winter → 367.23.24.WinterA.csv
384.23-24.Winter → 384.23.24WinterA.csv
385.23-24.Winter → 385.23.24.WinterA.csv
- Imported 62 raw CSV files, normalizing for file format, value format, and precision
- Concatenated all the raw files into "wintertemp_all"
- Removed rows in "wintertemp_all" without temperature values that were produced when the logger was tracking other functions
- Converted datetimes for each type of date format (AM/PM, datetime with seconds, datetime without seconds) into ISO datetime format in "wintertemp_all"
- Converted measurement datetime to UTC in "wintertemp_all"
- Joined "wintertemp_all" with "BCO-DMO_temp-logger_metadata_NSF-1850996"
- Renamed fields to better represent values
- Exported file as "949897_v1_temp_logger_23_24"
Specified by BCO-DMO Data Managers
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
HOBO MX2201 loggers (Onset)
HOBO MX2201 loggers (Onset)
PI Supplied Instrument Name: HOBO MX2201 loggers (Onset) PI Supplied Instrument Description: Loggers used were iButtons (Maxim Integrated; models DS1921G, DS1921Z, or DS1921G-F5) in 2019-2023, switching to HOBO loggers (Onset; model MX 2201) in 2022 (Makah Bay) or 2023 (all sites). Instrument Name: Onset HOBO Pendant MX2201 temperature logger Instrument Short Name:Onset HOBO Pendant MX2201 Instrument Description: The Onset HOBO MX2201 is an in-situ instrument for wet or underwater applications. It supports soil temperature, temperature, and water temperature. A one-channel logger that records up to approximately 96,000 measurements or internal logger events with 8K bytes memory. It has a polypropylene housing case. Uses Bluetooth to transmit data. Can be used with a solar radiation shield. Measurement range: -20 deg C to 70 deg C. Accuracy: +/- 0.50 deg C from 0 deg C to 50 deg C. Water depth rating: 30.5 m
Thermochron iButton (Maxim) primarily model DS1921G
Thermochron iButton (Maxim) primarily model DS1921G
PI Supplied Instrument Name: Thermochron iButton (Maxim) primarily model DS1921G PI Supplied Instrument Description:Loggers used were iButtons (Maxim Integrated; models DS1921G, DS1921Z, or DS1921G-F5) in 2019-2023, switching to HOBO loggers (Onset; model MX 2201) in 2022 (Makah Bay) or 2023 (all sites). Instrument Name: Water Temperature Sensor Instrument Short Name:Water Temp Sensor Instrument Description: General term for an instrument that measures the temperature of the water with which it is in contact (thermometer). Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/134/