Purple sea urchin morphometrics from Marna Laboratory Experiments at the Quadra Island Ecological Observatory from Sep to Dec 2021

Website: https://www.bco-dmo.org/dataset/963419
Data Type: experimental
Version: 1
Version Date: 2025-06-24

Project
» Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations (Urchin metapopulations)
ContributorsAffiliationRole
Okamoto, Daniel K.Florida State University (FSU)Principal Investigator
Gimenez, IriaHakai InstituteScientist
Karelitz, Sam E.Florida State University (FSU)Scientist
Swezey, DanielUniversity of California-Davis (UC Davis)Scientist
Munstermann, Maya J.Florida State University (FSU)Student
Spindel, NathanFlorida State University (FSU)Student
Collicutt, BrennaHakai InstituteTechnician
Cronmiller, EvanHakai InstituteTechnician
Foss, MeganHakai InstituteTechnician
Mahara, NatalieDepartment of Fisheries and Oceans CanadaTechnician
Rolheiser, KateHakai InstituteTechnician
Ward-Diorio, RebeccaUniversity of California-Berkeley (UC Berkeley)Data Manager
Mickle, AudreyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
These data include morphometrics of individual purple sea urchins, Strongylocentrotus purpuratus (urn:lsid:marinespecies.org:taxname:240747), involved in a multifactorial laboratory experiment at the Hakai Institute Quadra Island Ecological Observatory between 2021-09-15 and 2021-12-11. The experiment investigated impacts of contemporary high pCO2 and imposed dynamic historical temperature trends on multiple aspects of individual thermal performance. Morphometrics included test diameter and height, overall wet mass, gonad wet mass, overall dry mass, gonad dry mass, overall ash mass, and gonad ash mass. Test dimensions were measured using digital calipers (Mitutoyo America Corporation®, Aurora IL, USA). Mass measurements were made using a calibrated digital scale (Mettler-Toledo, LLC., Columbus, OH, USA). Ocean warming and acidification threaten the stability of foundation species not just through direct physiological stress, but also indirectly via impacts on primary consumption. However, the effects of these drivers on this critical ecological interaction may not be generalizable due to complex energetic impacts on both consumers and their resource(s). Therefore, understanding consumer responses to multiple drivers and dynamic conditions are especially important for key taxa, such as S. purpuratus, which exert strong grazing impacts on kelp forests. All animals were simultaneously collected from Ucluelet, British Columbia, Canada (48° 56.604N, 125° 34.699W) from a depth of 7-8 m relative to mean low tide on 3 September 2021 using SCUBA and immediately transported to the Marna Laboratory flow through seawater system. Animals were haphazardly selected and assigned to the "Wild" group or "Experimental" group (and thereafter treatments) from this pool. 


Coverage

Location: Hakai Institute Quadra Island Ecological Observatory, Quadra Island, British Columbia, Canada with animals collected from Ucluelet, British Columbia, Canada (48° 56.604N, 125° 34.699W)
Spatial Extent: Lat:50.108305 Lon:-125.219087
Temporal Extent: 2021-09-03 - 2021-12-11

Methods & Sampling

To quantify how different thermal regimes affect investment in gonads and development of gametes in male and female urchins, we first conducted a 10-week experiment in which 300 animals were incubated in replicate 350L mesocosms that simulated El Niño (N = 4 mesocosms, 60 animals per treatment) or La Niña (N = 4 mesocosms, 60 animals) conditions based on historical, empirical benthic temperature time series from Scripps Pier in La Jolla, Californiathat coincide with historical collapses in larval supply in Southern California. 

We paired these treatments with a range of fixed temperature incubations (10, 13, 16, 17, 18, 20 °C, N = 2 mesocosms, 30 animals per treatment), two of which matched the mean temperature of the El Niño (20 °C) and La Niña (16 °C). Experiments were conducted at the Marna Lab at the Hakai Institute’s Quadra Island Ecological Observatory in Heriot Bay, British Columbia due to availability of sophisticated seawater systems for careful, replicated temperature manipulations.

Field Collections and Acclimation

We collected sea urchins by hand on SCUBA in the vicinity of Ucluelet, British Columbia, Canada (48.94°N, 125.56° W) from a depth of 7-8 m relative to mean low tide in September 2021 and transported them to the Marna Lab via truck in seawater filled coolers with bubblers in less than 24 hours. We transferred sea urchins to flow-through sea tables and allowed them to recover for a period of one week before placing animals into the mesocosm system. Animals were haphazardly selected and assigned to the "Wild" group or "Experimental" group (and thereafter treatments) from this pool. 

For the "Experimental" group, we selected healthy individuals within a constrained size range for incubations (n = 300, mean test diameter = 56.09 mm, range test diameter = 42.12 – 69.46 mm). Finally, we assigned animals to mesocosms at random at ambient temperature and exposed each assigned mesocosm to a temperature ramp, where the ramp reached target temperatures after two weeks from the initial incoming, ambient temperature (mean across all tanks of 13.3°C, SD = 0.3°C) to avoid thermal shock. Once initial target temperatures were reached, they were maintained or, for the variable treatments, were manually adjusted daily in the AM (∼8am each day) as needed by 0.5 °C increments in a scheduled manner to match historical mean El Niño and La Niña daily temperature trends.

Mesocosm System

We placed urchins in a custom-built array of twenty replicated 214 L [90(L) x 59.5(W) x 40(H) cm] acrylic mesocosms supplied with flow-through UV sterilized and filtered seawater. Each mesocosm was capable of independent control of temperature and animals were provided a lighting regime for all mesocosms using LED fixtures (Aquamaxx, CA, USA) programmed to provide 10L:14D with two-hour linear light intensity transition periods for dawn and dusk (0-100% from 07:00 to 09:00 “dawn”, and 100-0% from 17:00 to 19:00 “dusk”). Each mesocosm independently maintained temperature treatments using a heat exchanger fitted with a titanium coil regulated by a dual stage digital temperature controller (Resolution = 0.1°C, Dwyer Instruments, LLC.©, Michigan City, IN, USA). The mesocosm system employed central cooling (Aermec Mits Airconditioning Inc., Mississauga, ON, Canada) and heating (boiler array, Viessmann Manufacturing Company Inc., Warwick, RI, USA) to supply independent heat exchangers with on-demand cold and warm glycol loops for down- and up-regulation of water temperature, respectively. We manually checked and re-calibrated sensors, as needed, using digital traceable thermometers twice daily to control potential temperature sensor drift. We randomly assigned mesocosms to the specified treatments.

Animal husbandry

We fed individuals uniform dry pellets combining several macroalgal species formulated for the aquaculture of S. purpuratus (Urchinomics Canada Inc., Halifax, NS, Canada). Animals in mesocosms were fed twice per week and we removed uneaten food and refuse every 72 h. More detail available in the results publication (Okamoto et al. 2023).

Morphometrics

For a focal sea urchin, morphometrics included measurements of test dimensions, wet mass, dry mass, and ash mass as well as visual determinations of the sex and whether gametes were actively extruded immediately following dissection. Test dimensions were measured using digital calipers (Mitutoyo America Corporation®, Aurora IL, USA). Wet weight was measured using a calibrated digital scale (Mettler-Toledo, LLC., Columbus, OH, USA) following a 30 s drying period in a dry dissection tray (United States Plastic Corporation®, Lima, OH, USA). We estimated the amount of metabolically active biomass for an individual by calculating ash-free dry mass (AFDM) for each subject. AFDM quantifies soft tissue biomass while excluding skeletal biomass that does not contribute meaningfully to changes in DO. We calculated AFDM as the difference between dry mass and post-combustion ash mass (i.e., skeletal mass). We measured all mass metrics by weighing samples on a calibrated digital scale (Mettler-Toledo, LLC). To measure dry mass, we first cracked the test of the urchins and discarded the coelomic fluid, then dried the carcasses for 24 hours at 60 ℃ in a drying oven then weighed the dried carcasses. To measure post-combustion ash mass, we combusted these dried carcasses for six hours at 450 ℃ in a muffle furnace, then weighed the resulting ashes of each carcass.

For full methods, see results publication (Okamoto et al. 2023).


BCO-DMO Processing Description

- Imported "morphometrics.csv" into BCO-DMO system
- Renamed missing parameter name "row_num"
- Formatted dates in YYYY-MM-DD format
- Exported file as "963419_v1_urchin_morphometrics.csv"
- Species name Strongylocentrotus purpuratus (urn:lsid:marinespecies.org:taxname:240747) verified as current accepted form on 2025-07-08, using the WoRMs World Registery of Marine Species database.


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Related Publications

Okamoto, D. K., Spindel, N. B., Collicutt, B., Mustermann, M. J., Karelitz, S., Gimenez, I., Rolheiser, K., Cronmiller, E., Foss, M., Mahara, N., Swezey, D., Ferraro, R., Rogers-Bennett, L., & Schroeter, S. (2023). Thermal suppression of gametogenesis explains historical collapses in larval recruitment. https://doi.org/10.1101/2023.09.28.559919
Results
Okamoto, D. K., Spindel, N. B., Munstermann, M. J., Karelitz, S., Collicutt, B., Gimenez, I., Rolheiser, K., Cronmiller, E., Foss, M., Mahara, N., Swezey, D., Ferraro, R., Rogers-Bennett, L., & Schroeter, S. C. (2025). Thermal suppression of gametogenesis can explain historical collapses in larval recruitment in Strongylocentrotus purpuratus. Communications Biology, 8(1). https://doi.org/10.1038/s42003-025-08829-8
Results
Spindel, Nathan B. "Ecophysiology of Ectothermic Ecosystem Engineers: Bioenergetic Effects of Climate and Food on Dominant Consumers and their Consequences for Coastal Ecosystems." Order No. 30692820 The Florida State University, 2023. United States -- Florida: ProQuest. Web. https://www.proquest.com/dissertations-theses/ecophysiology-ectothermic-ecosystem-engineers/docview/2915867877/se-2
Results

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Related Datasets

IsRelatedTo
Okamoto, D. K., Munstermann, M. J., Karelitz, S. E., Spindel, N., Swezey, D., Collicutt, B., Mahara, N., Cronmiller, E., Rolheiser, K., Foss, M., Gimenez, I., Ward-Diorio, R. (2025) Histological gonad reproductive scores for purple sea urchins from experiments at the Quadra Island Ecological Observatory from Sep to Dec 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-07-16 http://lod.bco-dmo.org/id/dataset/968848 [view at BCO-DMO]
Relationship Description: Histological data from the same experiment.

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Parameters

ParameterDescriptionUnits
date

Date of data collection

unitless
temp

Temperature treatment in degrees Celsius; treatments of 10, 13, 16, 17, 18, 18-14, 20, or 21-18

degrees Celsius
pco2_h_l

pCO2 treatment

unitless
tank_id

Identifier for experimental mesocosm

unitless
pit_tag_id

Identifier for implanted Passive Integrated Transponder (PIT)

unitless
diam

Test diameter of the organism

Millimeters (mm)
ht

Test height of the organism

Millimeters (mm)
crack_mass

Mass of the animal when cracked and drained

grams
wet_gonad_mass

Wet mass of a single gonad

grams
dry_urchin_mass

Dry mass of the urchin carcass minus two sampled gonads and the lantern

grams
dry_gonad_mass

Dry mass of the single excised gonad

grams
dry_lantern_mass

Dry mass of the lantern

grams
ash_mass_urchin

Mass of ash of the the urchin carcass following muffle furnacing at 450 degrees for six hours

grams
ash_mass_gonad

Mass of the ash following muffle furnacing at 450 degrees for six hours

grams
ooze_y_n

Gonads were actively oozing gametes during or after removal (y or n)

unitless
sex

Sex of the animal determined by visual assessment

unitless
histology_casette_number

Number of the histological cassette

unitless


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Instruments

Dataset-specific Instrument Name
Digital calipers (Mitutoyo America Corporation®, Aurora IL, USA)
Generic Instrument Name
calipers
Dataset-specific Description
Test dimensions were measured using digital calipers (Mitutoyo America Corporation®, Aurora IL, USA).
Generic Instrument Description
A caliper (or "pair of calipers") is a device used to measure the distance between two opposite sides of an object. Many types of calipers permit reading out a measurement on a ruled scale, a dial, or a digital display.

Dataset-specific Instrument Name
Drying oven (60 ℃, Thermo Scientific)
Generic Instrument Name
Drying Oven
Dataset-specific Description
To measure dry mass, we first cracked the test of the urchins and discarded the coelomic fluid, then dried the carcasses for 24 hours at 60 ℃ in a drying oven then weighed the dried carcasses. 
Generic Instrument Description
 a heated chamber for drying

Dataset-specific Instrument Name
Muffle furnace (450 ℃, Thermo Scientific)
Generic Instrument Name
muffle furnace
Dataset-specific Description
To measure post-combustion ash mass, we combusted these dried carcasses for six hours at 450 ℃ in a muffle furnace, then weighed the resulting ashes of each carcass.
Generic Instrument Description
A muffle furnace or muffle oven (sometimes retort furnace in historical usage) is a furnace in which the subject material is isolated from the fuel and all of the products of combustion, including gases and flying ash.  A type of jacketed enclosure that is used to heat a material to significantly high temperatures while keeping it contained and fully isolated from external contaminants, chemicals or substances. Muffle furnaces are usually lined with stainless steel, making them largely corrosion-resistant.

Dataset-specific Instrument Name
Calibrated scale (Mettler-Toledo, LLC., Columbus, OH, USA)
Generic Instrument Name
scale or balance
Dataset-specific Description
Wet weight was measured using a calibrated digital scale (Mettler-Toledo, LLC., Columbus, OH, USA) following a 30 s drying period in a dry dissection tray (United States Plastic Corporation®, Lima, OH, USA). We measured all mass metrics by weighing samples on a calibrated digital scale (Mettler-Toledo, LLC). 
Generic Instrument Description
Devices that determine the mass or weight of a sample.

Dataset-specific Instrument Name
SCUBA
Generic Instrument Name
Self-Contained Underwater Breathing Apparatus
Dataset-specific Description
All animals were simultaneously collected from Ucluelet, British Columbia, Canada (48° 56.604N, 125° 34.699W) from a depth of 7-8 m relative to mean low tide on 3 September 2021 using SCUBA and immediately transported to the Marna Laboratory flow through seawater system.
Generic Instrument Description
The self-contained underwater breathing apparatus or scuba diving system is the result of technological developments and innovations that began almost 300 years ago. Scuba diving is the most extensively used system for breathing underwater by recreational divers throughout the world and in various forms is also widely used to perform underwater work for military, scientific, and commercial purposes. Reference: https://oceanexplorer.noaa.gov/technology/technical/technical.html


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Project Information

Collaborative Research: The effects of marine heatwaves on reproduction, larval transport and recruitment in sea urchin metapopulations (Urchin metapopulations)

Coverage: Coastal California Waters from San Diego through Mendocino Counties


NSF Award Abstract:
Rapid and extreme warming events such as El Niño and marine heatwaves have had ecological and economic impacts on nearshore marine ecosystems. These impacts include reductions in biomass and collapses in commercial fisheries. For many species, population booms and busts are controlled by shifts in reproduction and juvenile dispersal related to warmer temperatures and ocean circulation. However, how population fluctuations are shaped by interacting processes that control adult reproduction and larval survival remains unclear. Marine heatwaves often accompany major disruptions in ocean circulation, which can affect survival and the distribution of species that produce free-floating, planktonic larvae. As a result, species can be impacted directly by temperature effects on organismal reproduction and survival, and indirectly by shifts in ocean circulation that affect larval success. This project is examining how the joint effects of temperature and ocean circulation are controlling populations of purple sea urchins (Strongylocentrotus purpuratus). To address project objectives, the team is developing oceanographic models to predict dispersal of planktonic larvae in combination with controlled experiments on adult reproductive success. This project is advancing the understanding of how ecologically important species respond to ocean temperature and circulation, which are forecast to shift under future climate change scenarios. Broader impacts of the project include training of students and post-docs in STEM and educational outreach. Curriculum development and implementation is occurring in collaboration with existing K-12 outreach programs that focus on underserved communities and under-represented groups. The goal is to empower the next generation of scientists to use integrative approaches to predict ecological consequences of climate change.

Purple sea urchins are an ideal species for studying the coupled impacts of warming and ocean circulation on recruitment and survival given a wealth of ecological and organismal data. The species has a mapped genome, can be transported large distances as larvae by ocean currents, and larval abundances in California exhibit orders of magnitude variation with heatwaves and El Niño fluctuations. To quantify the processes that shape spatial and temporal variability in larval supply, researchers are applying a novel combination of biophysical modeling, experiments and statistical modeling of long-term, high-resolution data on larval settlement across the Southern California Bight (SCB). Research module 1 is quantifying spatial and temporal patterns of larval transport using a 3D-biophysical model of the SCB. The model is testing how interactions among historical changes in ocean circulation and temperature, larval life history, and larval behavioral traits affect variation in larval supply in space and time. Research module 2 is focused on how temperature could affect spatial and temporal variation in egg production. Experiments are characterizing reproductive thermal performance curves and quantifying how these vary among populations and organismal history. A novel assay is assessing epigenetic regulation of gene expression associated with performance curves. Finally, Module 3 will integrate mechanistic models from Modules 1 and 2 to statistically assess their ability to explain spatial and temporal trends in a nearly three-decade dataset of larval settlement from six sites in the SCB. This is one of the first studies that integrates models of larval transport, reproductive performance and settlement data to empirically test how physical and biological processes affect local recruitment patterns in complex marine meta-populations.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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