Performance of coral and sea anemone early life stages under normoxic and hypoxic conditions from lab and field experiments performed in Pennsylvania (USA) and Bermuda in 2023-2024

Website: https://www.bco-dmo.org/dataset/964162
Data Type: experimental
Version: 1
Version Date: 2025-06-13

Project
» CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales (Coral acclimatization)
ContributorsAffiliationRole
Barott, KatieUniversity of Pennsylvania (Penn)Principal Investigator
Glass, BenjaminUniversity of Pennsylvania (Penn)Student
Mickle, AudreyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset arose from a project in which we investigated how hypoxia influences coral and sea anemone early life stages by comparing hypoxia responses across larvae and juveniles of three cnidarian species representing a range of life histories: the reef-building coral Galaxea fascicularis, a broadcast spawner with horizontal transmission of endosymbiotic algae (family Symbiodiniaceae); the reef-building coral Porites astreoides, a brooder with vertical endosymbiont transmission; and the estuarine sea anemone Nematostella vectensis, a non-symbiotic broadcast spawner. Specifically, larvae were exposed to normoxic (i.e., controls) or hypoxic (dissolved oxygen < 2 mg L−1 for 6 h) conditions before being cultured (under normoxia) through the juvenile stage. Data pertaining to organismal performance—including size, ash-free dry weight, protein content, chlorophyll content, symbiont density, photosynthesis and respiration rates, photochemical yield, heat tolerance (survival and Fv/Fm), settlement rate, and swimming behavior—were collected at several time points alongside environmental variables such as temperature, salinity, and dissolved oxygen concentration. This work was supported by the NIH (HD083185), which provided stipend support during the completion of the related PhD research, and by the American Fisheries Society (Steven Berkeley Marine Conservation Fellowship), which supplemented primary NSF funding (OCE-2237658) to help cover research expenses.


Coverage

Location: Lab experiments performed in Philadelphia, Pennsylvania, USA and field experiments performed at the Bermuda Institute of Ocean Sciences.
Temporal Extent: 2023-06-01 - 2024-11-01

Methods & Sampling

Adult culture and spawning

Adult Nematostella vectensis sea anemones were collected from a salt marsh in Brigantine, New Jersey in the fall of 2020, and spawning was induced. Larvae (n = 1 cohort with mixed parentage) were then cultured to the planula stage (3 d post-fertilization) for experimentation. An aquarium population of adult Galaxea fascicularis colonies (n = 9 females, 10 males) spawned during August 2023 at Carnegie Science (Baltimore, MD, USA), yielding a cohort of planulae (n = 1 cohort with mixed parentage) that were used in experiments within 48 h. Adult Porites astreoides colones (n = 20) were collected in Bermuda (32°22′13″N, 64°44′27″W) during July 2023. Brooded planulae (n = 4 cohorts) were collected and maintained in culture for ~ 48 h.

At the time of use in experimentation, larvae from all 3 species were in the planula stage and would become competent to settle within 72–96 h (Hand and Uhlinger 1992; Goodbody-Gringley et al. 2018; Wei et al. 2023). Artificial seawater was used for culturing and experimentation for N. vectensis and G. fascicularis, while flow-through, natural seawater facilities at the Bermuda Institute for Ocean Science were used for P. astreoides.

Dissoved Oxygen Treatments

Stage-matched, swimming planulae of N. vectensis, G. fascicularis, and P. astreoides (N = 1,200–2,400 larvae species-1) were divided into six replicate groups (three normoxia/control and three hypoxia) and exposed to 6 h of normoxia (dissolved oxygen (DO) = 6.8–8.69 mg L-1) or severe hypoxia (DO = 1.58–1.8 mg L-1; seawater deoxygenated using N2 gas) inside sealed glass jars (500 mL) overnight from 21:00 h to 03:00 h the following day. The jars were placed at the ambient culture temperature for each species (N. vectensis: 18°C; G. fascicularis: 27°C; P. astreoides: 28°C). At the end of the treatment period, the jars were uncapped and groups of 20–30 larvae (N = 60–90 larvae treatment-1 species-1) were transferred to 1.5 mL tubes without seawater for storage at -80°C until processing

Measurements

Detailed methods can be found in the associated publication (Glass and Barott 2025).

  • Ash-free dry weight (AFDW; i.e., organic biomass) of larvae and juveniles was quantified from burned, dried tissue.
  • Chlorophyll content within algal endosymbionts of larvae and juveniles was quantified via spectroscopy.
  • Heat tolerance of P. astreoides larval symbionts was quantified via changes in photochemical yield (collected with a pulse-amplitude-modulation (PAM) fluorometer) over time at 36°C.
  • Heat tolerance of larvae was quantified via visual observation of survival over time at 36°C. Photochemical yield of P. astreoides larvae and juveniles as quantified using a pulse-amplitude-modulation (PAM) fluorometer.
  • Metabolic rates of larvae and juveniles was quantified via respirometry.
  • Protein content larvae and juveniles was quantified via Bradford assays.
  • Larval settlement rates were quantified via brightfield microscopy.
  • Larval and juvenile sizes were quantified via brightfield microscopy.
  • Larval swimming behavior immediately following the oxygen treatments was quantified via imaging using iPhone 14 (Apple).
  • Larval and juvenile symbiont density was quantified via flow cytometry. 

Data Processing Description

Full details regarding data and statistical analyses are present in Glass and Barott (2025), Supporting Information. RStudio with R version 4.2.1 was used for all analyses (RStudio Team 2020). All values are expressed as averages rounded to appropriate significant figures ± standard error of the mean (SEM), and all original data is attached as supplemental files and published (Glass, B., & Barott, K. 2024), as referenced in the related datasets section. The code used (Glass, B., & Barott, K. 2024) is listed in the related publication section. 


BCO-DMO Processing Description

- Imported "AFDW_data.csv", "Chlorophyll_data.csv", "Heat_tolerance_PAM_data.csv", "Heat_tolerance_survival_data.csv", "PAM_data.csv", "Photosynthesis_data.csv", "Protein_data.csv", "Respiration_data.csv", "Settlement_data.csv", "Size_data.csv", "Swimming_behavior_data.csv", "Symbiont_density_data.csv", "Treatment_seawater_conditions_data.csv" into the BCO-DMO system
- Concatenated all datafiles with their original file names in the "Data_filename" parameter
- Exported file as "964162_v1_performance_early_life_stages.csv"


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Data Files

File
964162_v1_performance_early_life_stages.csv
(Comma Separated Values (.csv), 255.16 KB)
MD5:4e0a8c65c6287de200b627c3e18811de
Primary data file for dataset ID 964162, version 1

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Supplemental Files

File
AFDW_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/AFDW_data.csv
(Comma Separated Values (.csv), 4.81 KB)
MD5:6ad703297040095211a091e19c3d7e19
Data pertaining to the ash-free dry weight (AFDW; i.e., organic biomass) of larvae and juveniles as quantified from burned, dried tissue
Chlorophyll_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Chlorophyll_data.csv
(Comma Separated Values (.csv), 2.47 KB)
MD5:e25a3d60a434296a45fdd5e2a4c82646
Data pertaining to the chlorophyll content within algal endosymbionts of larvae and juveniles as quantified via spectroscopy
Heat_tolerance_PAM_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Heat_tolerance_PAM_data.csv
(Comma Separated Values (.csv), 4.71 KB)
MD5:a9e008056b2a3c8b12978721152a60f8
Data pertaining to the heat tolerance of P. astreoides larvae as quantified via changes in photochemical yield (collected with a pulse-amplitude-modulation (PAM) fluorometer) over time at 36°C
Heat_tolerance_survival_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Heat_tolerance_survival_data.csv
(Comma Separated Values (.csv), 19.62 KB)
MD5:3821bd0e8ae6f2eb36ca432b2b372393
Data pertaining to the heat tolerance of larvae as quantified via visual observation of survival over time at 36°C
PAM_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/PAM_data.csv
(Comma Separated Values (.csv), 2.58 KB)
MD5:af66cab324edfc8f0c8989a3ca837ce4
Data pertaining to the photochemical yield of P. astreoides larvae and juveniles as quantified using a pulse-amplitude-modulation (PAM) fluorometer
Photosynthesis_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Photosynthesis_data.csv
(Comma Separated Values (.csv), 1.92 KB)
MD5:1a41850855714a875713382100c93fc7
Data pertaining to the photosynthesis rates of P. astreoides larvae and juveniles as quantified via respirometry
Protein_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Protein_data.csv
(Comma Separated Values (.csv), 4.90 KB)
MD5:7f5eaf72b1861582ae7f4f320b8892cf
Data pertaining to the protein content larvae and juveniles as quantified via Bradford assays
README
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/README.md
(Markdown, 12.12 KB)
MD5:3f9292537b8812857745c0b7ebab54a4
README file; includes parameter descriptions of all supplemental data files.
Respiration_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Respiration_data.csv
(Comma Separated Values (.csv), 3.89 KB)
MD5:01255c0f2528e175bec474d94cf3f4c6
Data pertaining to the respiration rates of larvae and juveniles as quantified via respirometry
Settlement_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Settlement_data.csv
(Comma Separated Values (.csv), 1.51 KB)
MD5:7dcf1de0d0318218d0909368bc5dae19
Data pertaining to larval settlement rates as quantified via visual observation
Size_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Size_data.csv
(Comma Separated Values (.csv), 95.99 KB)
MD5:734982264a1468d310b316fe44000faf
Data pertaining to larval and juvenile sizes as quantified via microscopy
Swimming_behavior_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Swimming_behavior_data.csv
(Comma Separated Values (.csv), 1.15 KB)
MD5:ad85fa24937e1fdfaae1484f257f0577
Data pertaining to larval swimming behavior immediately following the oxygen treatments, as quantified via imaging
Symbiont_density_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Symbiont_density_data.csv
(Comma Separated Values (.csv), 3.54 KB)
MD5:cc6ab7930ba939f39e896d5e5eb8ee6f
Data pertaining to larval and juvenile symbiont density as quantified via flow cytometry
Treatment_seawater_conditions_data.csv
filename: doi_10_5061_dryad_bnzs7h4hr__v20241226/Treatment_seawater_conditions_data.csv
(Comma Separated Values (.csv), 4.08 KB)
MD5:ef3d78ea00d2fb53dac8ed1d3cc97b11
Data pertaining to seawater conditions (e.g., temperature, etc.) within the jars used for the oxygen treatments

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Related Publications

Glass, B. H., & Barott, K. L. (2025). Hypoxia threatens coral and sea anemone early life stages. Limnology and Oceanography, 70(3), 684–699. Portico. https://doi.org/10.1002/lno.12798
Results
Glass, B., & Barott, K. (2024). Data from: Hypoxia threatens coral and sea anemone early life stages. Zenodo. https://doi.org/10.5281/ZENODO.10232330 https://doi.org/10.5281/zenodo.10232330
Software
Goodbody-Gringley, G., Wong, K. H., Becker, D. M., Glennon, K., & de Putron, S. J. (2018). Reproductive ecology and early life history traits of the brooding coral, Porites astreoides, from shallow to mesophotic zones. Coral Reefs, 37(2), 483–494. https://doi.org/10.1007/s00338-018-1673-2
Methods
Hand, C., & Uhlinger, K. R. (1992). The Culture, Sexual and Asexual Reproduction, and Growth of the Sea Anemone Nematostella vectensis. The Biological Bulletin, 182(2), 169–176. https://doi.org/10.2307/1542110
Methods
RStudio Team (2020). RStudio: Integrated Development for R. RStudio, PBC, Boston, MA URL http://www.rstudio.com/.
Software
Wei, F., Cui, M., Huang, W., Wang, Y., Liu, X., Zeng, X., Su, H., & Yu, K. (2023). Ex situ reproduction and recruitment of scleractinian coral Galaxea fascicularis. Marine Biology, 170(3). https://doi.org/10.1007/s00227-023-04175-7
Methods

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Related Datasets

Different Version
Glass, B., & Barott, K. (2024). Data from: Hypoxia threatens coral and sea anemone early life stages (Version 5) [Data set]. Dryad. https://doi.org/10.5061/DRYAD.BNZS7H4HR https://doi.org/10.5061/dryad.bnzs7h4hr

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Parameters

ParameterDescriptionUnits
Data_filename

Supplemental filename, data source

unitless
Species

Species from which the data originate

unitless
Treatment

Oxygen treatment to which larvae were exposed (either normoxia or hypoxia)

unitless
Cohort

Cohort (i.e., group of larvae born at the same time) from which the data originate

unitless
Group

Experimental treatment jar (i.e., biological replicate) from which the data originate

unitless
Life_stage

Developmental/life history stage of animals at time of data collection (either larva or juvenile)

unitless
Hours_post_treatment

Hours after hypoxia treatment at which time data were collected

hours
AFDW_ug_mm

Ash-free dry weight of animals measured in µg and normalized to size in mm

µg/mm
Chlorophyll_pg_symbiont

Chlorophyll content of endosymbiont cells measured in pg and normalized per symbiont cell

pg/cell
Hours_at_36_C

Hours after which larvae were placed at 36°C at which time data were collected

hours
Dark_adapted_Fv_Fm_1

Photochemical yield

unitless
Larvae_surviving

The number of larvae surviving at the time of data collection

unitless
Total_larvae

The total number of larvae exposed to heat stress (always 8)

unitless
Proportion_surviving

Larvae_surviving / total_larvae

unitless
Percent_surviving

Proportion_surviving * 100

percent
Photo_pmol_O2_min_ug_AFDW

Photosynthesis rate expressed as pmol O2 (oxygen) produced per minute per µg of ash-free dry weight

pmol/min/µg
Protein_ug_mm

Cellular protein content expressed as µg protein per size (in mm)

µg/mm
Resp_pmol_O2_min_ug_AFDW

Respiration rate expressed as pmol O2 (oxygen) consumed per minute per µg of ash-free dry weight

pmol/min/µg
Settlement_rate_percent

Percentage of larvae settled on the final day of data collection (i.e., final/maximum settlement rate)

percent
Size_mm

Size of larvae (length) and juveniles (polyp diameter) as measured via microscopy

mm
Larvae_in_water_column_percent

Percentage of larvae actively swimming in the water column immediately at the conclusions of the treatment period

percent
Symbiont_density_cells_ug_AFDW

Number of symbiont cells within larvae or juveniles expressed as the number of cells per µg of ash-free dry weight

cells/µg
Time_in_treatment_hours

Time since the beginning of the treatment period expressed in hours

hours
Temperature_C

Seawater temperature as determined via a handheld probe expressed in °C

degrees Celsius
Salinity_ppt

Seawater salinity as determined via a handheld probe expressed in parts per thousand (ppt)

parts per thousand (ppt)
Dissolved_oxygen_mg_L

Seawater dissolved oxygen concentration as determined via a handheld probe expressed in mg per L of seawater

mg/L


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Instruments

Dataset-specific Instrument Name
iPhone 14 (Apple)
Generic Instrument Name
Camera
Dataset-specific Description
Larval swimming behavior immediately following the oxygen treatments was quantified via imaging using iPhone 14 (Apple).
Generic Instrument Description
All types of photographic equipment including stills, video, film and digital systems.

Dataset-specific Instrument Name
Cytek biosciences guava flow cytometer
Generic Instrument Name
Flow Cytometer
Dataset-specific Description
Larval and juvenile symbiont density was quantified via flow cytometry. 
Generic Instrument Description
Flow cytometers (FC or FCM) are automated instruments that quantitate properties of single cells, one cell at a time. They can measure cell size, cell granularity, the amounts of cell components such as total DNA, newly synthesized DNA, gene expression as the amount messenger RNA for a particular gene, amounts of specific surface receptors, amounts of intracellular proteins, or transient signalling events in living cells. (from: http://www.bio.umass.edu/micro/immunology/facs542/facswhat.htm)

Dataset-specific Instrument Name
Pulse-amplitude-modulation (PAM) fluorometer
Generic Instrument Name
Fluorometer
Dataset-specific Description
Heat tolerance of P. astreoides larval symbionts was quantified via changes in photochemical yield (collected with a pulse-amplitude-modulation (PAM) fluorometer) over time at 36°C.
Generic Instrument Description
A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.

Dataset-specific Instrument Name
microscope (AmScope)
Generic Instrument Name
Microscope - Optical
Dataset-specific Description
Larval settlement rates were quantified via brightfield microscopy. Larval and juvenile sizes were quantified via brightfield microscopy.
Generic Instrument Description
Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope".

Dataset-specific Instrument Name
YSI ProSolo handheld probe
Generic Instrument Name
Oxygen Sensor
Dataset-specific Description
Seawater temperature as determined via a handheld probe expressed in °C. Seawater salinity as determined via a handheld probe expressed in parts per thousand (ppt). Seawater dissolved oxygen concentration as determined via a handheld probe expressed in mg per L of seawater.
Generic Instrument Description
An electronic device that measures the proportion of oxygen (O2) in the gas or liquid being analyzed

Dataset-specific Instrument Name
SensorDish Reader from Precision Sensing
Generic Instrument Name
Respirometer
Dataset-specific Description
Metabolic rates of larvae and juveniles was quantified via respirometry.
Generic Instrument Description
A device that measures the rate of respiration by a living organism or organic system by measuring its rate of exchange of oxygen and/or carbon dioxide.

Dataset-specific Instrument Name
spectrophotometer (Agilent)
Generic Instrument Name
Spectrophotometer
Dataset-specific Description
Chlorophyll content within algal endosymbionts of larvae and juveniles was quantified via spectroscopy.
Generic Instrument Description
An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples.


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Project Information

CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales (Coral acclimatization)

Coverage: Kaneohe Bay, Oahu, Hawaii


NSF Award Abstract:

Ocean warming driven by climate change has led to staggering losses of coral on reefs worldwide and is now among the most pressing of stressors threatening the survival of coral reef ecosystems today. As marine heatwaves associated with ocean warming become increasingly frequent, it is urgent to understand if and how reef-building corals will be able to respond to these repeat stress events and thus survive in a rapidly warming ocean. To address this problem, this project is investigating how corals on the reef respond to recurring marine heatwaves in order to identify if repeat exposure to heat stress promotes coral tolerance of higher temperatures via acclimatization or instead leads to the accumulation of stress and thus reduced performance and survival following future stress. The results of this study are critical for understanding how the current generation of corals will respond to increasingly warmer oceans, and whether acclimatization will buy enough individuals sufficient time for adaptation to occur and promote coral persistence into the future. In addition, this project is training students from secondary schools through advanced postdoctoral researchers in global change biology and ecology. Specifically, the investigators are increasing access to research opportunities for undergraduate students by developing a new hands-on course-based undergraduate research experience (CURE) in Global Ocean Change Biology that will reach hundreds of students per year. Outreach efforts include creation of hands-on coral reefs and climate change activities for incoming first-generation, low-income undergraduate students and a professional development program to train middle and high-school teachers to deploy these climate change activities in their classrooms in the Philadelphia Public School District.

Acclimatization following exposure to sub-lethal heat stress may be an important protective mechanism for corals to survive a changing climate. However, the role of environmental memory of marine heatwaves in driving acclimatization or, conversely, stress accumulation and sensitization of reef-building corals is not well understood. This study is addressing this question using a combination of in situ and mesocosm experiments to assess the cellular, organismal, and ecological consequences of repeat heatwaves on corals with contrasting bleaching histories. Specifically, the researchers are monitoring adjacent conspecific pairs of bleaching-susceptible and bleaching-resistant individuals of two reef-building coral species in Hawaii, Montipora capitata and Porites compressa. These corals have been monitored for over 7 years through multiple bleaching events and are being used to test the hypothesis that environmental memory of marine heatwaves differentially alters coral thermal performance due to phenotypic variation in acclimatization ability within and between species. This work is identifying whether the bleaching thresholds of corals with different bleaching histories varies through time, and the consequences of these phenotypes on coral calcification, survival, and population size structure are being assessed using a combination of benthic surveys, photogrammetry, and in situ growth measurements. The influence of environmental memory of heatwaves on coral physiology is being assessed using thermal performance curves to determine how the thermal optima of respiration, photosynthesis, calcification, and host intracellular pH change (or not) over time (e.g. ambient vs. heatwave years) and if that response differs between corals with contrasting bleaching phenotypes. Finally, the contribution of algal endosymbionts to acclimatization is being evaluated by exposing corals to a range of increasing temperatures in experimental mesocosms, potentially uncovering differences in the degree of acclimatization or sensitization for host vs. symbiont traits in corals with high fidelity (P. compressa) vs. cosmopolitan (M. capitata) symbiont associations. By understanding of the phenotypic diversity in thermal performance across biological scales, this research improves predictions of coral persistence in the face of the ongoing climate crisis.

This project is supported by the Biological Oceanography, Integrative Ecological Physiology, and Ocean Education Programs.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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