Physiological measurements from sea anemones exposed to normoxic or hypoxic conditions from lab experiments performed in Philadelphia, PA, USA in 2024

Website: https://www.bco-dmo.org/dataset/964167
Data Type: experimental
Version: 1
Version Date: 2025-06-24

Project
» CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales (Coral acclimatization)
ContributorsAffiliationRole
Barott, KatieUniversity of Pennsylvania (Penn)Principal Investigator
Glass, BenjaminUniversity of Pennsylvania (Penn)Student
Mickle, AudreyWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset contains data from physiological measurements of a lab population of Nematostella vectensis sea anemones exposed to normoxic (i.e., control) or hypoxic conditions. Metrics measured pertain to adult metabolic performance (e.g., dry weights, aerboic respiraton rates) and reproductive physiology (e.g., fecundity, egg sizes, sperm mitochondrial membrane potential). Measurements were also made in larvae produced from experimental adults, including larval respiration and development rates.


Coverage

Location: Lab experiments were performed in Philadelphia, Pennsylvania, USA. The sea anemone line used in the experiment originated in Brigantine, NJ, USA.
Temporal Extent: 2024-01-01 - 2024-08-11

Methods & Sampling

Sea Anemone Collection and Culture

Adult Nematostella vectensis sea anemones were collected from the JC NERR near Brigantine, New Jersey, USA in 2020. Spawning was induced approximately twice per month using a standard method for Nematostella vectensis (Hand and Uhlinger 1992; Stefanik et al. 2013). Larval anemones were retained in culture dishes and advanced to the adult stage over 2 years, then spawned in individual cups to identify female and male animals for use in the experiment. 

After seven days of acclimation, adult anemones were distributed across 6 tubs (N = 3 tubs per DO treatment: normoxia/control and hypoxia) with 15 females and 14 males in each tub (N = 87 animals per treatment). Next, spawning was induced on day 7 of acclimation to clear anemones of developing gametes (Glass, Schmitt, et al. 2023; Rivera et al. 2021). Total water changes were then performed for each tub, and animals were placed back in ambient culture (i.e., normoxia) for the start of the experimental period (i.e., experimental day 0). 

Hypoxia Treatments

Over nights 5, 6, and 7 of the experimental period, adult anemones were exposed to either normoxia (i.e., controls; DO = 7–10 mg L−1) or hypoxia (DO = 0.5–1.5 mg L−1) for ~12 h night−1. Nitrogen gas was used to deoxygenate the water in a glass jar filled nearly to the brim (500 mL; Ball Corporation, Westminster, CO, USA) to a value of ~1.5 mg L−1 (salinity corrected) as determined by a handheld DO probe (YSI ProSolo 626650; accuracy = ±0.02 and precision = 0.01 mg L−1; YSI, Yellow Springs, OH, USA). The anemones from 1 culture tub (N = 29 animals) were transferred with minimal culture water (containing no Artemia) into the jar, which was then topped off with anoxic 12 ppt ASW, capped, and covered with plastic wrap secured by a rubber band. This process was repeated for the 5 other jars, skipping the seawater deoxygenation step for the 3 normoxia jars, and all 6 jars were placed in a dark incubator at 18°C. While anemones were in the treatment jars, the (normoxic) seawater from the culture tubs was pooled and filtered (mesh size 100 μm) before being redistributed across the tubs to minimise block effects by tub and maintain water cleanliness by removing particulate waste, though this may have introduced a confounding factor and should be considered when interpreting the data.

After ~12 h, the jars were opened and a DO reading was quickly recorded. Anemones were then transferred back into their respective tubs with minimal water carried over from the treatment jars. Both animals exposed to hypoxia and controls were handled in the same manner.

Measurements

Detailed methods can be found in the associated publication (Glass et al. 2025).

  • Dry weight of adult sea anemones was determined using a drying oven and lab balance.
  • Respiration rates of adult and larval sea anemones were determined via respirometry using a PreSens sensor dish reader system.
  • Female fecundity was determined by counting eggs imaged via brightifled microscopy.
  • Male fecundity was determined by counting sperm via flow cytometry.
  • Egg size was determined by measuring eggs in images collected via brightfield microscopy.
  • Sperm mitochondrial membrane potential was determined using the fluorescent dye JC-1 analyzed via flow cytometry.
  • Larval developmental success and settlement rates were determined via visual inspection under brightfield microscopy.

Data Processing Description

Full details regarding data and statistical analyses are present in Glass et al. (2025), Supporting Information. RStudio with R version 4.2.1 was used for all analyses (RStudio Team 2020). All values are expressed as averages rounded to appropriate significant figures ± standard error of the mean (SEM), and all original data is attached as supplemental files and published (Glass, B., & Barott, K. 2025), as referenced in the related datasets section. The code used (Glass, B., & Barott, K. 2025) is listed in the related publication section. 


BCO-DMO Processing Description

- Imported "Combined_physiology_data.csv" into the BCO-DMO system
- Rename parameter names to remove units, in keeping with BCO-DMO style
- Exported file as "964167_v1_sea_anemones_measurements"


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Data Files

File
964167_v1_sea_anemones_measurements.csv
(Comma Separated Values (.csv), 1.34 KB)
MD5:4f5dce4c7410c0740aec989ce48d913a
Primary data file for dataset ID 964167, version 1

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Supplemental Files

File
Adult_combined_dry_weight_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Adult_combined_dry_weight_data.csv
(Comma Separated Values (.csv), 2.76 KB)
MD5:41dee7c24126773b0e27fc8e7b0c476b
This file is for data pertaining to the dry weight of adult sea anemones collected at several time points during the experiment.
Adult_fecundity_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Adult_fecundity_data.csv
(Comma Separated Values (.csv), 10.80 KB)
MD5:528796bf5b9719e51a7054c817fc82e6
This file is for data pertaining to the reproductive metrics quantified in anemones upon spawning induction. This file contains NA values as a result of combining data from female and male animals into a single data sheet. NA values indicate sex-specific metrics; for example, rows with data for male animals have NAs in the egg counts column as these animals do not produce eggs.
Adult_respiration_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Adult_respiration_data.csv
(Comma Separated Values (.csv), 3.74 KB)
MD5:dbdfa36fc5c7173a7421f4ccb0be03fe
This file is for data pertaining to the respiration rates of adult anemones.
Adult_spawning_frequency_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Adult_spawning_frequency_data.csv
(Comma Separated Values (.csv), 192 bytes)
MD5:a8534b48fae1973347130d1334b25c94
This file is for data pertaining to the number of anemones spawned in each experimental treatment.
Development_success_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Development_success_data.csv
(Comma Separated Values (.csv), 208 bytes)
MD5:267993cf28a93e942a2dab38d77f0cc5
This file is for data pertaining to the developmental success of eggs from female anemones.
Egg_size_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Egg_size_data.csv
(Comma Separated Values (.csv), 13.88 KB)
MD5:b4d65052a76b6e19875faa11a329a6b1
This file is for data pertaining to the sizes of eggs produced by female anemones.
Larval_respiration_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Larval_respiration_data.csv
(Comma Separated Values (.csv), 552 bytes)
MD5:65d869916c5b96aa9366112bcad13ce9
This file is for data pertaining to the respiration rates of larvae.
README
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/README.md
(Markdown, 8.54 KB)
MD5:7ee3dd9f7243b4c55e1f21dcad0e44b2
README file; provides parameter descriptions for all supplemental files.
Settlement_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Settlement_data.csv
(Comma Separated Values (.csv), 983 bytes)
MD5:65d8a79f77e68f0beb01acf0cf10629a
This file is for data pertaining to larval settlement rates.
Sperm_MMP_data.csv
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Sperm_MMP_data.csv
(Comma Separated Values (.csv), 461.71 KB)
MD5:15f5ab8b52fa9ceaca1da95b6f96b5dd
This file is for data pertaining to sperm mitochondrial membrane potential (MMP) as determined via JC-1 dye and flow cytometry.
Summary_count_table.txt
filename: doi_10_5061_dryad_n2z34tn5n__v20250415/Summary_count_table.txt
(Plain Text, 1.45 MB)
MD5:4abed72c0cafe151089c661533ddfa89
This is the summary count table generated from the RNA sequencing data raw reads (see Glass and Barott 2025)

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Related Publications

Glass, B. H., Schmitt, A. H., Brown, K. T., Speer, K. F., & Barott, K. L. (2023). Parental exposure to ocean acidification impacts gamete production and physiology but not offspring performance in Nematostella vectensis. Biology Open, 12(3). https://doi.org/10.1242/bio.059746
Methods
Glass, B. H., Ye, A. C., Hemphill, C. N., Jones, K. G., Dworetzky, A. G., & Barott, K. L. (2025). Hypoxia Disrupts Sex‐Specific Physiology and Gene Expression Leading to Decreased Fitness in the Estuarine Sea Anemone Nematostella vectensis. Molecular Ecology, 34(9). Portico. https://doi.org/10.1111/mec.17755
Results
Glass, B., & Barott, K. (2025). Data from: Hypoxia disrupts sex-specific physiology and gene expression leading to decreased fitness in the estuarine sea anemone Nematostella vectensis. Zenodo. https://doi.org/10.5281/zenodo.12789046
Software
Hand, C., & Uhlinger, K. R. (1992). The Culture, Sexual and Asexual Reproduction, and Growth of the Sea Anemone Nematostella vectensis. The Biological Bulletin, 182(2), 169–176. https://doi.org/10.2307/1542110
Methods
Rivera, H. E., Chen, C.-Y., Gibson, M. C., & Tarrant, A. M. (2021). Plasticity in parental effects confers rapid larval thermal tolerance in the estuarine anemone Nematostella vectensis. Journal of Experimental Biology, 224(5). https://doi.org/10.1242/jeb.236745
Methods
Stefanik, D. J., Friedman, L. E., & Finnerty, J. R. (2013). Collecting, rearing, spawning and inducing regeneration of the starlet sea anemone, Nematostella vectensis. Nature Protocols, 8(5), 916–923. https://doi.org/10.1038/nprot.2013.044
Methods

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Related Datasets

Different Version
Glass, Benjamin; Barott, Katie (2025). Data from: Hypoxia disrupts sex-specific physiology and gene expression leading to decreased fitness in the estuarine sea anemone Nematostella vectensis [Dataset]. Dryad. https://doi.org/10.5061/dryad.n2z34tn5n

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Parameters

ParameterDescriptionUnits
Sample_name

Unique identifiers for experimental replicates

unitless
Sample_ID

Unique identifiers for experimental replicates

unitless
Treatment

Oxygen treatment to which adult animals were exposed (normoxia or hypoxia)

unitless
Group

Experimental group (biological replicates for each oxygen treatment)

unitless
Sex

Sex of animal(s) from which data arose

unitless
Average_dry_weight

Dry weight expressed in grams

grams
Average_respiration

Aerobic respiration rate expressed in umol O2 consumed per minute per g of dry weight

umol O2 consumed per minute per g of dry weight
Average_eggs_dry_weight

Female fecundity expressed as egg release per mg of adult animal dry weight

egg release per mg of adult animal dry weight
Average_egg_volume

Egg volume expressed as um3

um3
Development_success_percent

Percent of larvae successfully developing past 3 days post-fertilization

percent
Average_relative_fitness

Fitness relative to average of normoxia-exposed (i.e., control) individuals expressed in arbitrary units

unitless
Average_sperm_M_dry_weight

Male fecundity expressed as million (M) of sperm cells released per mg of adult animal dry weight

million (M) of sperm cells released per mg of adult animal dry weight
Average_sperm_M_respiration

Aerboic respiration rate of sperm expressed as nmol O2 consumed per minute per million (M) sperm cells

nmol O2 consumed per minute per million (M) sperm cells
Average_sperm_red_green_ratio

Red to green fluorescence ratio of JC-1 dye used to determine sperm mitochondrial membrane potential

unitless
Spawned_percent

Percent of animals that released gametes

percent


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Instruments

Dataset-specific Instrument Name
drying oven
Generic Instrument Name
Drying Oven
Dataset-specific Description
Dry weight of adult sea anemones was determined using a drying oven and lab balance.
Generic Instrument Description
 a heated chamber for drying

Dataset-specific Instrument Name
Cytek guava flow cytometer
Generic Instrument Name
Flow Cytometer
Dataset-specific Description
Male fecundity was determined by counting sperm via flow cytometry.
Generic Instrument Description
Flow cytometers (FC or FCM) are automated instruments that quantitate properties of single cells, one cell at a time. They can measure cell size, cell granularity, the amounts of cell components such as total DNA, newly synthesized DNA, gene expression as the amount messenger RNA for a particular gene, amounts of specific surface receptors, amounts of intracellular proteins, or transient signalling events in living cells. (from: http://www.bio.umass.edu/micro/immunology/facs542/facswhat.htm)

Dataset-specific Instrument Name
Microscope
Generic Instrument Name
Microscope - Optical
Dataset-specific Description
Female fecundity was determined by counting eggs imaged via brightifled microscopy. Egg size was determined by measuring eggs in images collected via brightfield microscopy. Larval developmental success and settlement rates were determined via visual inspection under brightfield microscopy.
Generic Instrument Description
Instruments that generate enlarged images of samples using the phenomena of reflection and absorption of visible light. Includes conventional and inverted instruments. Also called a "light microscope".

Dataset-specific Instrument Name
SensorDish Reader from Precision Sensing
Generic Instrument Name
Respirometer
Dataset-specific Description
Respiration rates of adult and larval sea anemones were determined via respirometry using a PreSens sensor dish reader system.
Generic Instrument Description
A device that measures the rate of respiration by a living organism or organic system by measuring its rate of exchange of oxygen and/or carbon dioxide.

Dataset-specific Instrument Name
lab balance
Generic Instrument Name
scale or balance
Dataset-specific Description
Dry weight of adult sea anemones was determined using a drying oven and lab balance.
Generic Instrument Description
Devices that determine the mass or weight of a sample.


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Project Information

CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales (Coral acclimatization)

Coverage: Kaneohe Bay, Oahu, Hawaii


NSF Award Abstract:

Ocean warming driven by climate change has led to staggering losses of coral on reefs worldwide and is now among the most pressing of stressors threatening the survival of coral reef ecosystems today. As marine heatwaves associated with ocean warming become increasingly frequent, it is urgent to understand if and how reef-building corals will be able to respond to these repeat stress events and thus survive in a rapidly warming ocean. To address this problem, this project is investigating how corals on the reef respond to recurring marine heatwaves in order to identify if repeat exposure to heat stress promotes coral tolerance of higher temperatures via acclimatization or instead leads to the accumulation of stress and thus reduced performance and survival following future stress. The results of this study are critical for understanding how the current generation of corals will respond to increasingly warmer oceans, and whether acclimatization will buy enough individuals sufficient time for adaptation to occur and promote coral persistence into the future. In addition, this project is training students from secondary schools through advanced postdoctoral researchers in global change biology and ecology. Specifically, the investigators are increasing access to research opportunities for undergraduate students by developing a new hands-on course-based undergraduate research experience (CURE) in Global Ocean Change Biology that will reach hundreds of students per year. Outreach efforts include creation of hands-on coral reefs and climate change activities for incoming first-generation, low-income undergraduate students and a professional development program to train middle and high-school teachers to deploy these climate change activities in their classrooms in the Philadelphia Public School District.

Acclimatization following exposure to sub-lethal heat stress may be an important protective mechanism for corals to survive a changing climate. However, the role of environmental memory of marine heatwaves in driving acclimatization or, conversely, stress accumulation and sensitization of reef-building corals is not well understood. This study is addressing this question using a combination of in situ and mesocosm experiments to assess the cellular, organismal, and ecological consequences of repeat heatwaves on corals with contrasting bleaching histories. Specifically, the researchers are monitoring adjacent conspecific pairs of bleaching-susceptible and bleaching-resistant individuals of two reef-building coral species in Hawaii, Montipora capitata and Porites compressa. These corals have been monitored for over 7 years through multiple bleaching events and are being used to test the hypothesis that environmental memory of marine heatwaves differentially alters coral thermal performance due to phenotypic variation in acclimatization ability within and between species. This work is identifying whether the bleaching thresholds of corals with different bleaching histories varies through time, and the consequences of these phenotypes on coral calcification, survival, and population size structure are being assessed using a combination of benthic surveys, photogrammetry, and in situ growth measurements. The influence of environmental memory of heatwaves on coral physiology is being assessed using thermal performance curves to determine how the thermal optima of respiration, photosynthesis, calcification, and host intracellular pH change (or not) over time (e.g. ambient vs. heatwave years) and if that response differs between corals with contrasting bleaching phenotypes. Finally, the contribution of algal endosymbionts to acclimatization is being evaluated by exposing corals to a range of increasing temperatures in experimental mesocosms, potentially uncovering differences in the degree of acclimatization or sensitization for host vs. symbiont traits in corals with high fidelity (P. compressa) vs. cosmopolitan (M. capitata) symbiont associations. By understanding of the phenotypic diversity in thermal performance across biological scales, this research improves predictions of coral persistence in the face of the ongoing climate crisis.

This project is supported by the Biological Oceanography, Integrative Ecological Physiology, and Ocean Education Programs.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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